Wall clock time and date at job start Mon Mar 8 2021 07:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32566 * 1 3 3 C 1.47816 * 120.00097 * 2 1 4 4 C 1.39517 * 120.14045 * 114.34715 * 3 2 1 5 5 C 1.37993 * 119.85456 * 179.97438 * 4 3 2 6 6 C 1.38318 * 120.14312 * 0.02927 * 5 4 3 7 7 C 1.38371 * 120.28666 * 359.97148 * 6 5 4 8 8 C 1.37950 * 120.13958 * 359.74951 * 7 6 5 9 9 C 1.50701 * 120.07260 * 180.27491 * 8 7 6 10 10 O 1.42904 * 109.47201 * 104.37073 * 9 8 7 11 11 Si 1.86299 * 109.47038 * 344.37259 * 9 8 7 12 12 H 1.48507 * 109.47023 * 60.00052 * 11 9 8 13 13 H 1.48503 * 109.47263 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47364 * 300.00072 * 11 9 8 15 15 Si 1.86800 * 119.99984 * 180.02562 * 2 1 3 16 16 C 1.86298 * 109.47323 * 359.97438 * 15 2 1 17 17 C 1.86308 * 109.47069 * 240.00016 * 15 2 1 18 18 C 1.86297 * 109.47327 * 120.00141 * 15 2 1 19 19 H 1.08001 * 119.99806 * 354.71149 * 1 2 3 20 20 H 1.08004 * 119.99707 * 174.70379 * 1 2 3 21 21 H 1.07999 * 120.07296 * 359.96571 * 4 3 2 22 22 H 1.08000 * 119.92696 * 179.97438 * 5 4 3 23 23 H 1.08001 * 119.85928 * 179.97438 * 6 5 4 24 24 H 1.08004 * 119.92715 * 180.02562 * 7 6 5 25 25 H 1.08997 * 109.47320 * 224.37312 * 9 8 7 26 26 H 0.96694 * 114.00155 * 300.00645 * 10 9 8 27 27 H 1.08997 * 109.46809 * 300.00317 * 16 15 2 28 28 H 1.08998 * 109.46894 * 60.00011 * 16 15 2 29 29 H 1.08994 * 109.47133 * 180.02562 * 16 15 2 30 30 H 1.08994 * 109.47204 * 180.02562 * 17 15 2 31 31 H 1.09005 * 109.46714 * 300.00202 * 17 15 2 32 32 H 1.08997 * 109.47170 * 59.99617 * 17 15 2 33 33 H 1.08998 * 109.46916 * 300.00005 * 18 15 2 34 34 H 1.09006 * 109.47369 * 59.99871 * 18 15 2 35 35 H 1.09003 * 109.47585 * 179.97438 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2801 0.0000 4 6 2.8458 1.6381 1.0992 5 6 3.5337 2.8343 1.0927 6 6 3.4497 3.6779 -0.0001 7 6 2.6768 3.3288 -1.0935 8 6 1.9888 2.1331 -1.1019 9 6 1.1524 1.7515 -2.2960 10 8 1.8362 0.7541 -3.0574 11 14 0.8644 3.2546 -3.3583 12 1 2.1696 3.7922 -3.8195 13 1 0.0408 2.8785 -4.5353 14 1 0.1539 4.2912 -2.5672 15 14 2.2597 -1.6177 -0.0007 16 6 1.0491 -3.0338 -0.0006 17 6 3.3308 -1.7171 1.5204 18 6 3.3308 -1.7158 -1.5218 19 1 -0.5400 0.9314 0.0862 20 1 -0.5400 -0.9314 -0.0863 21 1 2.9117 0.9805 1.9534 22 1 4.1384 3.1127 1.9432 23 1 3.9897 4.6132 -0.0002 24 1 2.6157 3.9917 -1.9439 25 1 0.1944 1.3569 -1.9575 26 1 2.6984 1.0367 -3.3915 27 1 0.4228 -2.9762 0.8896 28 1 0.4221 -2.9758 -0.8903 29 1 1.5941 -3.9777 -0.0005 30 1 3.8761 -2.6608 1.5198 31 1 4.0390 -0.8885 1.5208 32 1 2.7041 -1.6597 2.4104 33 1 2.7041 -1.6576 -2.4118 34 1 4.0391 -0.8873 -1.5215 35 1 3.8761 -2.6596 -1.5221 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12175814.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:31:30 Heat of formation + Delta-G solvation = -28.344148 kcal Electronic energy + Delta-G solvation = -15210.235640 eV Core-core repulsion = 12911.092113 eV Total energy + Delta-G solvation = -2299.143528 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 236.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.57802 -37.44153 -34.85805 -32.48677 -30.53227 -29.36954 -28.23685 -28.19203 -26.74088 -23.86670 -22.45697 -20.48645 -18.22020 -17.15095 -16.74560 -16.35763 -15.56362 -15.49612 -14.89752 -14.68287 -14.44741 -14.00691 -13.84311 -13.67888 -13.34637 -13.27898 -13.13555 -13.04939 -12.92923 -12.80317 -12.47428 -12.19439 -11.96149 -11.66820 -11.02599 -10.82143 -10.73834 -10.30481 -10.13148 -9.83215 -9.25250 0.28045 0.38127 1.14164 1.21573 1.38135 1.48823 1.86835 1.92231 2.05945 2.29681 2.69459 2.88601 3.61310 3.81719 3.96889 4.02366 4.21640 4.49211 4.60209 4.70436 4.80928 4.84475 4.86185 4.88101 4.89532 4.93789 4.99238 5.02453 5.08757 5.34135 5.54275 5.58610 5.60430 5.62378 5.69127 5.75450 5.86323 6.10696 6.74543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.372 4.372 3 C -0.017 4.017 4 C -0.132 4.132 5 C -0.118 4.118 6 C -0.133 4.133 7 C -0.136 4.136 8 C -0.128 4.128 9 C -0.074 4.074 10 O -0.539 6.539 11 Si 0.971 3.029 12 H -0.248 1.248 13 H -0.273 1.273 14 H -0.265 1.265 15 Si 1.098 2.902 16 C -0.458 4.458 17 C -0.459 4.459 18 C -0.451 4.451 19 H 0.088 0.912 20 H 0.119 0.881 21 H 0.137 0.863 22 H 0.139 0.861 23 H 0.138 0.862 24 H 0.128 0.872 25 H 0.116 0.884 26 H 0.384 0.616 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.816 -0.206 1.004 1.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.411 4.411 3 C -0.018 4.018 4 C -0.150 4.150 5 C -0.136 4.136 6 C -0.150 4.150 7 C -0.154 4.154 8 C -0.128 4.128 9 C -0.185 4.185 10 O -0.345 6.345 11 Si 0.796 3.204 12 H -0.172 1.172 13 H -0.198 1.198 14 H -0.189 1.189 15 Si 1.286 2.714 16 C -0.566 4.566 17 C -0.566 4.566 18 C -0.558 4.558 19 H 0.106 0.894 20 H 0.137 0.863 21 H 0.155 0.845 22 H 0.157 0.843 23 H 0.156 0.844 24 H 0.146 0.854 25 H 0.134 0.866 26 H 0.232 0.768 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.109 0.260 0.621 0.682 hybrid contribution 0.465 0.336 0.169 0.598 sum 0.574 0.596 0.790 1.144 Atomic orbital electron populations 1.24343 0.95499 1.02289 0.95506 1.28139 1.01197 1.08247 1.03547 1.19005 0.96197 0.93689 0.92871 1.21573 0.97332 0.97597 0.98466 1.21419 0.99059 0.94254 0.98857 1.21377 0.99395 1.00639 0.93637 1.21244 0.98163 0.96478 0.99530 1.20464 1.00423 0.94874 0.97059 1.24942 0.98130 1.01851 0.93624 1.86495 1.36863 1.40332 1.70824 0.85417 0.80565 0.75912 0.78493 1.17216 1.19816 1.18912 0.77609 0.65224 0.62083 0.66442 1.26236 1.11670 1.13991 1.04668 1.26273 1.10014 1.04627 1.15686 1.26168 1.09741 1.03581 1.16317 0.89411 0.86314 0.84508 0.84282 0.84434 0.85416 0.86580 0.76790 0.90815 0.91063 0.90780 0.90844 0.91260 0.90943 0.90908 0.91991 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.06 11.82 66.67 0.79 0.84 16 2 C -0.37 -0.13 3.54 23.65 0.08 -0.04 16 3 C -0.02 -0.05 4.90 -20.12 -0.10 -0.14 16 4 C -0.13 -0.23 9.22 22.52 0.21 -0.02 16 5 C -0.12 -0.11 10.03 22.23 0.22 0.11 16 6 C -0.13 -0.16 10.04 22.32 0.22 0.07 16 7 C -0.14 -0.29 8.65 22.23 0.19 -0.10 16 8 C -0.13 -0.34 5.27 -19.61 -0.10 -0.44 16 9 C -0.07 -0.08 2.13 71.24 0.15 0.07 16 10 O -0.54 -0.42 12.54 -148.98 -1.87 -2.28 16 11 Si 0.97 0.83 25.52 68.60 1.75 2.58 16 12 H -0.25 0.00 6.71 99.48 0.67 0.67 16 13 H -0.27 -1.06 7.11 99.48 0.71 -0.35 16 14 H -0.26 -0.78 7.11 99.48 0.71 -0.07 16 15 Si 1.10 -3.05 12.34 68.60 0.85 -2.20 16 16 C -0.46 1.10 7.88 113.37 0.89 1.99 16 17 C -0.46 0.97 8.21 113.37 0.93 1.90 16 18 C -0.45 0.04 8.65 113.37 0.98 1.02 16 19 H 0.09 0.01 7.90 -2.91 -0.02 -0.02 16 20 H 0.12 -0.40 7.07 -2.91 -0.02 -0.42 16 21 H 0.14 -0.14 7.08 -2.91 -0.02 -0.16 16 22 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 23 H 0.14 -0.36 8.06 -2.91 -0.02 -0.38 16 24 H 0.13 -0.03 4.90 -2.91 -0.01 -0.05 16 25 H 0.12 0.08 5.87 -2.39 -0.01 0.07 16 26 H 0.38 -1.79 8.70 -74.06 -0.64 -2.43 16 27 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 28 H 0.07 -0.15 7.96 -2.39 -0.02 -0.16 16 29 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 30 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 31 H 0.07 -0.11 7.25 -2.38 -0.02 -0.13 16 32 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 33 H 0.07 0.09 7.64 -2.39 -0.02 0.08 16 34 H 0.06 0.05 7.96 -2.38 -0.02 0.04 16 35 H 0.07 -0.05 7.96 -2.39 -0.02 -0.07 16 Total: 0.00 -7.68 289.93 6.33 -1.35 By element: Atomic # 1 Polarization: -5.83 SS G_CDS: 1.13 Total: -4.70 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 4.47 Total: 5.25 kcal Atomic # 8 Polarization: -0.42 SS G_CDS: -1.87 Total: -2.28 kcal Atomic # 14 Polarization: -2.22 SS G_CDS: 2.60 Total: 0.38 kcal Total: -7.68 6.33 -1.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12175814.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.992 kcal (2) G-P(sol) polarization free energy of solvation -7.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -1.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds