Wall clock time and date at job start Mon Mar 8 2021 07:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32561 * 1 3 3 C 1.47818 * 119.99826 * 2 1 4 4 C 1.39913 * 120.55784 * 313.51977 * 3 2 1 5 5 C 1.38411 * 118.29301 * 180.02562 * 4 3 2 6 6 C 1.38298 * 119.30623 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.46385 * 180.02562 * 6 5 4 8 8 O 1.42907 * 109.47010 * 330.00504 * 7 6 5 9 9 Si 1.86299 * 109.47408 * 210.00166 * 7 6 5 10 10 H 1.48498 * 109.46874 * 60.00014 * 9 7 6 11 11 H 1.48494 * 109.47087 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46834 * 300.00238 * 9 7 6 13 13 N 1.31929 * 121.07474 * 359.97438 * 6 5 4 14 14 C 1.31686 * 121.87158 * 0.03949 * 13 6 5 15 15 Si 1.86802 * 120.00091 * 180.02562 * 2 1 3 16 16 C 1.86295 * 109.47010 * 273.15408 * 15 2 1 17 17 C 1.86303 * 109.47088 * 33.15538 * 15 2 1 18 18 C 1.86303 * 109.47133 * 153.15494 * 15 2 1 19 19 H 1.08001 * 119.99669 * 179.97438 * 1 2 3 20 20 H 1.07996 * 120.00122 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.85763 * 359.97438 * 4 3 2 22 22 H 1.08003 * 120.35147 * 179.71797 * 5 4 3 23 23 H 1.09002 * 109.47006 * 90.00151 * 7 6 5 24 24 H 0.96705 * 113.99886 * 299.99227 * 8 7 6 25 25 H 1.07999 * 119.71591 * 179.97438 * 14 13 6 26 26 H 1.09003 * 109.47371 * 60.00202 * 16 15 2 27 27 H 1.09005 * 109.46887 * 180.02562 * 16 15 2 28 28 H 1.09001 * 109.47510 * 299.99717 * 16 15 2 29 29 H 1.08998 * 109.46854 * 59.99711 * 17 15 2 30 30 H 1.09005 * 109.47032 * 179.97438 * 17 15 2 31 31 H 1.08997 * 109.46716 * 299.99890 * 17 15 2 32 32 H 1.08997 * 109.46960 * 65.83424 * 18 15 2 33 33 H 1.08993 * 109.47475 * 185.84232 * 18 15 2 34 34 H 1.09006 * 109.46735 * 305.83833 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0647 1.2802 0.0000 4 6 1.7018 2.3110 -0.8737 5 6 2.4262 3.4897 -0.8344 6 6 3.4752 3.6102 0.0589 7 6 4.2659 4.8922 0.1050 8 8 4.2683 5.4973 -1.1896 9 14 6.0175 4.5232 0.6213 10 1 6.6370 3.5946 -0.3580 11 1 6.7968 5.7865 0.6662 12 1 6.0150 3.8944 1.9667 13 7 3.7942 2.6214 0.8719 14 6 3.1355 1.4811 0.8719 15 14 2.2596 -1.6177 -0.0007 16 6 2.4864 -2.2046 1.7528 17 6 1.2967 -2.8904 -0.9619 18 6 3.9274 -1.3716 -0.7938 19 1 -0.5400 -0.9353 -0.0004 20 1 -0.5400 0.9353 -0.0004 21 1 0.8782 2.1899 -1.5616 22 1 2.1777 4.3054 -1.4972 23 1 3.8112 5.5738 0.8239 24 1 4.6594 4.9456 -1.8809 25 1 3.4267 0.6946 1.5523 26 1 1.5107 -2.3487 2.2168 27 1 3.0319 -3.1484 1.7523 28 1 3.0499 -1.4601 2.3152 29 1 1.1640 -2.5469 -1.9878 30 1 1.8419 -3.8343 -0.9627 31 1 0.3210 -3.0344 -0.4979 32 1 4.5293 -0.7062 -0.1750 33 1 4.4304 -2.3339 -0.8884 34 1 3.7981 -0.9305 -1.7822 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12201894.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:31:57 Heat of formation + Delta-G solvation = -31.392142 kcal Electronic energy + Delta-G solvation = -14741.546041 eV Core-core repulsion = 12376.844432 eV Total energy + Delta-G solvation = -2364.701609 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.105 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.31708 -37.93576 -35.55150 -32.93876 -31.48100 -29.61281 -28.58521 -28.47590 -27.17570 -24.44699 -23.50525 -20.61355 -18.74716 -17.65126 -17.01607 -16.50763 -16.32242 -15.48557 -15.05415 -14.61907 -14.35637 -14.28075 -14.12086 -14.04187 -13.85769 -13.65111 -13.37433 -13.30566 -13.16454 -13.04755 -12.50310 -12.00018 -11.82580 -11.67730 -11.10084 -10.97475 -10.87084 -10.74278 -10.53412 -10.13272 -9.36845 -0.14893 0.29137 1.01089 1.31253 1.62710 1.64052 1.76007 1.77277 2.01658 2.15309 2.46456 2.86202 3.13539 3.35746 3.79281 3.86946 3.96612 4.21798 4.38012 4.58900 4.62485 4.63738 4.66890 4.68564 4.69389 4.71530 4.76607 4.78270 5.03275 5.11889 5.29881 5.38752 5.47326 5.49823 5.61074 5.74966 6.43027 6.96126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.372 4.372 3 C -0.081 4.081 4 C -0.074 4.074 5 C -0.146 4.146 6 C 0.081 3.919 7 C -0.076 4.076 8 O -0.538 6.538 9 Si 0.981 3.019 10 H -0.260 1.260 11 H -0.262 1.262 12 H -0.242 1.242 13 N -0.477 5.477 14 C 0.106 3.894 15 Si 1.050 2.950 16 C -0.449 4.449 17 C -0.448 4.448 18 C -0.448 4.448 19 H 0.108 0.892 20 H 0.094 0.906 21 H 0.135 0.865 22 H 0.143 0.857 23 H 0.127 0.873 24 H 0.377 0.623 25 H 0.159 0.841 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.562 -2.564 -1.093 3.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.414 4.414 3 C -0.083 4.083 4 C -0.100 4.100 5 C -0.165 4.165 6 C -0.056 4.056 7 C -0.186 4.186 8 O -0.342 6.342 9 Si 0.802 3.198 10 H -0.183 1.183 11 H -0.187 1.187 12 H -0.165 1.165 13 N -0.188 5.188 14 C -0.052 4.052 15 Si 1.241 2.759 16 C -0.556 4.556 17 C -0.556 4.556 18 C -0.556 4.556 19 H 0.126 0.874 20 H 0.112 0.888 21 H 0.153 0.847 22 H 0.161 0.839 23 H 0.144 0.856 24 H 0.225 0.775 25 H 0.176 0.824 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.341 -2.048 0.053 2.077 hybrid contribution -1.241 -0.357 -1.033 1.653 sum -1.581 -2.405 -0.980 3.041 Atomic orbital electron populations 1.24316 0.95411 1.02093 0.94027 1.27926 1.01022 1.07686 1.04742 1.19999 0.96836 0.94583 0.96887 1.21811 0.98500 0.92057 0.97627 1.21826 0.95820 0.98708 1.00183 1.21704 0.95347 0.95219 0.93285 1.24960 1.11087 0.93115 0.89459 1.86514 1.84956 1.45367 1.17410 0.85123 0.73064 0.79307 0.82265 1.18339 1.18690 1.16484 1.67084 1.29196 1.00667 1.21817 1.22831 0.91404 0.94284 0.96684 0.78362 0.66288 0.63364 0.67864 1.26136 1.04932 1.06212 1.18334 1.26129 1.08743 1.11876 1.08864 1.26135 1.17121 1.04849 1.07523 0.87414 0.88772 0.84710 0.83936 0.85560 0.77546 0.82387 0.91026 0.90834 0.91090 0.91041 0.90791 0.91127 0.91121 0.90941 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.21 13.36 28.82 0.39 0.59 16 2 C -0.37 0.46 4.43 -37.57 -0.17 0.29 16 3 C -0.08 -0.04 5.27 -104.87 -0.55 -0.59 16 4 C -0.07 -0.03 9.48 -38.89 -0.37 -0.40 16 5 C -0.15 -0.11 9.37 -39.50 -0.37 -0.48 16 6 C 0.08 0.15 6.08 -82.53 -0.50 -0.36 16 7 C -0.08 -0.05 2.98 36.00 0.11 0.06 16 8 O -0.54 -0.14 11.84 -35.23 -0.42 -0.56 16 9 Si 0.98 1.24 27.16 -169.99 -4.62 -3.38 16 10 H -0.26 -0.53 7.11 56.52 0.40 -0.13 16 11 H -0.26 -0.53 7.11 56.52 0.40 -0.13 16 12 H -0.24 -0.64 7.11 56.52 0.40 -0.24 16 13 N -0.48 -1.34 8.34 -9.15 -0.08 -1.41 16 14 C 0.11 0.14 9.88 -17.13 -0.17 -0.03 16 15 Si 1.05 -2.93 11.19 -169.99 -1.90 -4.83 16 16 C -0.45 0.94 8.65 101.05 0.87 1.82 16 17 C -0.45 1.02 8.56 101.05 0.87 1.88 16 18 C -0.45 0.60 8.64 101.05 0.87 1.47 16 19 H 0.11 -0.35 7.36 -52.49 -0.39 -0.74 16 20 H 0.09 -0.14 7.85 -52.49 -0.41 -0.55 16 21 H 0.14 -0.17 8.00 -52.49 -0.42 -0.59 16 22 H 0.14 -0.06 7.46 -52.48 -0.39 -0.46 16 23 H 0.13 -0.02 7.96 -51.93 -0.41 -0.44 16 24 H 0.38 -1.09 8.70 45.56 0.40 -0.69 16 25 H 0.16 -0.13 7.04 -52.49 -0.37 -0.50 16 26 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 27 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 28 H 0.07 -0.15 7.65 -51.93 -0.40 -0.54 16 29 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 30 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 31 H 0.07 -0.18 7.68 -51.93 -0.40 -0.58 16 32 H 0.07 -0.06 7.51 -51.93 -0.39 -0.45 16 33 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 34 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 LS Contribution 291.55 15.07 4.39 4.39 Total: 0.00 -4.75 291.55 -6.10 -10.85 By element: Atomic # 1 Polarization: -4.86 SS G_CDS: -4.46 Total: -9.32 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 0.98 Total: 4.26 kcal Atomic # 7 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.41 kcal Atomic # 8 Polarization: -0.14 SS G_CDS: -0.42 Total: -0.56 kcal Atomic # 14 Polarization: -1.69 SS G_CDS: -6.52 Total: -8.21 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -4.75 -6.10 -10.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12201894.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.541 kcal (2) G-P(sol) polarization free energy of solvation -4.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds