Wall clock time and date at job start Mon Mar 8 2021 07:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32561 * 1 3 3 C 1.47818 * 119.99826 * 2 1 4 4 C 1.39913 * 120.55784 * 313.51977 * 3 2 1 5 5 C 1.38411 * 118.29301 * 180.02562 * 4 3 2 6 6 C 1.38298 * 119.30623 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.46385 * 180.02562 * 6 5 4 8 8 O 1.42907 * 109.47010 * 330.00504 * 7 6 5 9 9 Si 1.86299 * 109.47408 * 210.00166 * 7 6 5 10 10 H 1.48498 * 109.46874 * 60.00014 * 9 7 6 11 11 H 1.48494 * 109.47087 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46834 * 300.00238 * 9 7 6 13 13 N 1.31929 * 121.07474 * 359.97438 * 6 5 4 14 14 C 1.31686 * 121.87158 * 0.03949 * 13 6 5 15 15 Si 1.86802 * 120.00091 * 180.02562 * 2 1 3 16 16 C 1.86295 * 109.47010 * 273.15408 * 15 2 1 17 17 C 1.86303 * 109.47088 * 33.15538 * 15 2 1 18 18 C 1.86303 * 109.47133 * 153.15494 * 15 2 1 19 19 H 1.08001 * 119.99669 * 179.97438 * 1 2 3 20 20 H 1.07996 * 120.00122 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.85763 * 359.97438 * 4 3 2 22 22 H 1.08003 * 120.35147 * 179.71797 * 5 4 3 23 23 H 1.09002 * 109.47006 * 90.00151 * 7 6 5 24 24 H 0.96705 * 113.99886 * 299.99227 * 8 7 6 25 25 H 1.07999 * 119.71591 * 179.97438 * 14 13 6 26 26 H 1.09003 * 109.47371 * 60.00202 * 16 15 2 27 27 H 1.09005 * 109.46887 * 180.02562 * 16 15 2 28 28 H 1.09001 * 109.47510 * 299.99717 * 16 15 2 29 29 H 1.08998 * 109.46854 * 59.99711 * 17 15 2 30 30 H 1.09005 * 109.47032 * 179.97438 * 17 15 2 31 31 H 1.08997 * 109.46716 * 299.99890 * 17 15 2 32 32 H 1.08997 * 109.46960 * 65.83424 * 18 15 2 33 33 H 1.08993 * 109.47475 * 185.84232 * 18 15 2 34 34 H 1.09006 * 109.46735 * 305.83833 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0647 1.2802 0.0000 4 6 1.7018 2.3110 -0.8737 5 6 2.4262 3.4897 -0.8344 6 6 3.4752 3.6102 0.0589 7 6 4.2659 4.8922 0.1050 8 8 4.2683 5.4973 -1.1896 9 14 6.0175 4.5232 0.6213 10 1 6.6370 3.5946 -0.3580 11 1 6.7968 5.7865 0.6662 12 1 6.0150 3.8944 1.9667 13 7 3.7942 2.6214 0.8719 14 6 3.1355 1.4811 0.8719 15 14 2.2596 -1.6177 -0.0007 16 6 2.4864 -2.2046 1.7528 17 6 1.2967 -2.8904 -0.9619 18 6 3.9274 -1.3716 -0.7938 19 1 -0.5400 -0.9353 -0.0004 20 1 -0.5400 0.9353 -0.0004 21 1 0.8782 2.1899 -1.5616 22 1 2.1777 4.3054 -1.4972 23 1 3.8112 5.5738 0.8239 24 1 4.6594 4.9456 -1.8809 25 1 3.4267 0.6946 1.5523 26 1 1.5107 -2.3487 2.2168 27 1 3.0319 -3.1484 1.7523 28 1 3.0499 -1.4601 2.3152 29 1 1.1640 -2.5469 -1.9878 30 1 1.8419 -3.8343 -0.9627 31 1 0.3210 -3.0344 -0.4979 32 1 4.5293 -0.7062 -0.1750 33 1 4.4304 -2.3339 -0.8884 34 1 3.7981 -0.9305 -1.7822 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12201894.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:31:57 Heat of formation + Delta-G solvation = -23.966148 kcal Electronic energy + Delta-G solvation = -14741.224026 eV Core-core repulsion = 12376.844432 eV Total energy + Delta-G solvation = -2364.379594 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.105 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.34624 -37.94213 -35.50347 -32.95763 -31.43850 -29.44254 -28.43549 -28.29941 -27.16141 -24.47364 -23.50531 -20.53236 -18.76130 -17.66904 -17.03402 -16.48470 -16.35174 -15.48090 -15.06668 -14.65576 -14.33646 -14.16814 -14.02699 -13.88578 -13.73443 -13.56448 -13.20976 -13.14702 -13.01808 -12.91202 -12.54981 -12.17880 -11.96003 -11.60510 -11.00046 -10.89611 -10.80295 -10.72203 -10.46726 -10.14577 -9.34980 -0.15386 0.25695 1.09872 1.27191 1.48609 1.60621 1.81125 1.97737 2.00069 2.21520 2.62014 2.84436 3.12214 3.39279 3.86948 3.87737 3.99130 4.22007 4.39475 4.62898 4.75056 4.78621 4.80167 4.80617 4.85679 4.88679 4.88983 4.92754 5.06152 5.13870 5.38239 5.55405 5.62774 5.67763 5.69341 5.81636 6.55932 6.91814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.387 4.387 3 C -0.082 4.082 4 C -0.082 4.082 5 C -0.147 4.147 6 C 0.065 3.935 7 C -0.066 4.066 8 O -0.545 6.545 9 Si 1.009 2.991 10 H -0.272 1.272 11 H -0.272 1.272 12 H -0.265 1.265 13 N -0.502 5.502 14 C 0.090 3.910 15 Si 1.110 2.890 16 C -0.461 4.461 17 C -0.457 4.457 18 C -0.465 4.465 19 H 0.126 0.874 20 H 0.091 0.909 21 H 0.151 0.849 22 H 0.154 0.846 23 H 0.134 0.866 24 H 0.390 0.610 25 H 0.171 0.829 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 -3.017 -1.473 4.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.428 4.428 3 C -0.084 4.084 4 C -0.108 4.108 5 C -0.167 4.167 6 C -0.072 4.072 7 C -0.177 4.177 8 O -0.351 6.351 9 Si 0.834 3.166 10 H -0.197 1.197 11 H -0.198 1.198 12 H -0.189 1.189 13 N -0.213 5.213 14 C -0.068 4.068 15 Si 1.297 2.703 16 C -0.568 4.568 17 C -0.565 4.565 18 C -0.571 4.571 19 H 0.144 0.856 20 H 0.109 0.891 21 H 0.169 0.831 22 H 0.172 0.828 23 H 0.151 0.849 24 H 0.239 0.761 25 H 0.188 0.812 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.324 -2.493 -0.341 2.843 hybrid contribution -0.923 -0.244 -0.921 1.326 sum -2.246 -2.737 -1.262 3.759 Atomic orbital electron populations 1.24519 0.95267 1.02907 0.92848 1.28189 1.01410 1.07534 1.05619 1.20212 0.96514 0.95316 0.96331 1.22087 0.98895 0.91930 0.97880 1.21974 0.95477 0.99233 0.99967 1.21881 0.96105 0.95408 0.93757 1.24820 1.10007 0.93013 0.89882 1.86483 1.85123 1.45901 1.17571 0.84724 0.73576 0.77913 0.80429 1.19678 1.19751 1.18942 1.67062 1.30110 1.01440 1.22657 1.23137 0.91887 0.94345 0.97395 0.77432 0.64277 0.61978 0.66563 1.26276 1.05092 1.06332 1.19092 1.26220 1.09256 1.12050 1.08950 1.26366 1.18746 1.04703 1.07319 0.85571 0.89078 0.83104 0.82824 0.84860 0.76052 0.81163 0.90766 0.90699 0.91285 0.91145 0.90711 0.90442 0.91924 0.90728 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.54 13.36 66.67 0.89 1.43 16 2 C -0.39 1.16 4.43 23.66 0.10 1.26 16 3 C -0.08 -0.09 5.27 -20.02 -0.11 -0.20 16 4 C -0.08 -0.05 9.48 22.72 0.22 0.16 16 5 C -0.15 -0.24 9.37 22.33 0.21 -0.03 16 6 C 0.06 0.27 6.08 42.56 0.26 0.53 16 7 C -0.07 -0.12 2.98 71.24 0.21 0.10 16 8 O -0.54 -0.23 11.84 -148.98 -1.76 -2.00 16 9 Si 1.01 3.77 27.16 68.60 1.86 5.63 16 10 H -0.27 -1.48 7.11 99.48 0.71 -0.78 16 11 H -0.27 -1.38 7.11 99.48 0.71 -0.67 16 12 H -0.27 -1.94 7.11 99.48 0.71 -1.24 16 13 N -0.50 -3.35 8.34 -182.85 -1.53 -4.87 16 14 C 0.09 0.31 9.88 85.03 0.84 1.15 16 15 Si 1.11 -6.65 11.19 68.60 0.77 -5.88 16 16 C -0.46 2.10 8.65 113.37 0.98 3.08 16 17 C -0.46 2.53 8.56 113.37 0.97 3.50 16 18 C -0.47 1.00 8.64 113.37 0.98 1.98 16 19 H 0.13 -1.06 7.36 -2.91 -0.02 -1.08 16 20 H 0.09 -0.35 7.85 -2.91 -0.02 -0.38 16 21 H 0.15 -0.50 8.00 -2.91 -0.02 -0.53 16 22 H 0.15 -0.20 7.46 -2.91 -0.02 -0.22 16 23 H 0.13 -0.01 7.96 -2.39 -0.02 -0.03 16 24 H 0.39 -2.27 8.70 -74.05 -0.64 -2.91 16 25 H 0.17 -0.12 7.04 -2.91 -0.02 -0.14 16 26 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 27 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 28 H 0.07 -0.28 7.65 -2.39 -0.02 -0.30 16 29 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 30 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 31 H 0.08 -0.52 7.68 -2.39 -0.02 -0.53 16 32 H 0.06 -0.03 7.51 -2.39 -0.02 -0.05 16 33 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 34 H 0.06 -0.06 7.96 -2.38 -0.02 -0.08 16 Total: 0.00 -10.93 291.55 6.08 -4.85 By element: Atomic # 1 Polarization: -11.87 SS G_CDS: 1.18 Total: -10.69 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 5.56 Total: 12.96 kcal Atomic # 7 Polarization: -3.35 SS G_CDS: -1.53 Total: -4.87 kcal Atomic # 8 Polarization: -0.23 SS G_CDS: -1.76 Total: -2.00 kcal Atomic # 14 Polarization: -2.88 SS G_CDS: 2.63 Total: -0.25 kcal Total: -10.93 6.08 -4.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12201894.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.118 kcal (2) G-P(sol) polarization free energy of solvation -10.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds