Wall clock time and date at job start Mon Mar 8 2021 07:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32566 * 1 3 3 C 1.47816 * 120.00026 * 2 1 4 4 C 1.39917 * 120.55762 * 359.97438 * 3 2 1 5 5 C 1.38417 * 118.28899 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.34245 * 180.02562 * 5 4 3 7 7 O 1.42899 * 109.47508 * 64.99869 * 6 5 4 8 8 Si 1.86304 * 109.46979 * 185.00025 * 6 5 4 9 9 H 1.48503 * 109.47085 * 59.99805 * 8 6 5 10 10 H 1.48498 * 109.47091 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46920 * 299.99744 * 8 6 5 12 12 C 1.38288 * 119.30818 * 359.97438 * 5 4 3 13 13 N 1.31932 * 121.07544 * 0.02765 * 12 5 4 14 14 C 1.31689 * 121.87087 * 359.64724 * 13 12 5 15 15 Si 1.86801 * 119.99740 * 179.97438 * 2 1 3 16 16 C 1.86300 * 109.46957 * 359.97438 * 15 2 1 17 17 C 1.86296 * 109.47218 * 119.99867 * 15 2 1 18 18 C 1.86301 * 109.47053 * 240.00125 * 15 2 1 19 19 H 1.08002 * 120.00489 * 180.02562 * 1 2 3 20 20 H 1.08005 * 119.99743 * 359.72519 * 1 2 3 21 21 H 1.07994 * 120.85746 * 359.97438 * 4 3 2 22 22 H 1.09005 * 109.47089 * 304.99901 * 6 5 4 23 23 H 0.96696 * 113.99682 * 59.99847 * 7 6 5 24 24 H 1.08000 * 119.45971 * 179.97438 * 12 5 4 25 25 H 1.08007 * 119.71410 * 180.31672 * 14 13 12 26 26 H 1.09005 * 109.47206 * 60.00293 * 16 15 2 27 27 H 1.09003 * 109.46993 * 180.02562 * 16 15 2 28 28 H 1.08999 * 109.47326 * 299.99568 * 16 15 2 29 29 H 1.09007 * 109.46807 * 60.00052 * 17 15 2 30 30 H 1.08998 * 109.47421 * 179.97438 * 17 15 2 31 31 H 1.08995 * 109.47163 * 300.00430 * 17 15 2 32 32 H 1.09004 * 109.47199 * 59.99984 * 18 15 2 33 33 H 1.09003 * 109.47036 * 179.97438 * 18 15 2 34 34 H 1.08998 * 109.47195 * 299.99958 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0647 1.2801 0.0000 4 6 1.3770 2.4986 -0.0005 5 6 2.1160 3.6690 -0.0011 6 6 1.4227 5.0071 -0.0011 7 8 0.6985 5.1684 1.2202 8 14 2.6907 6.3633 -0.1549 9 1 3.4433 6.1957 -1.4241 10 1 2.0075 7.6819 -0.1556 11 1 3.6318 6.2935 0.9917 12 6 3.4970 3.5976 -0.0005 13 7 4.1187 2.4339 0.0000 14 6 3.4600 1.2936 0.0068 15 14 2.2596 -1.6178 0.0007 16 6 1.0488 -3.0337 0.0021 17 6 3.3306 -1.7172 -1.5203 18 6 3.3306 -1.7158 1.5219 19 1 -0.5401 -0.9353 0.0004 20 1 -0.5400 0.9354 0.0045 21 1 0.2974 2.5253 -0.0014 22 1 0.7319 5.0583 -0.8427 23 1 1.2513 5.1334 2.0128 24 1 4.0760 4.5092 -0.0013 25 1 4.0045 0.3608 0.0122 26 1 0.4218 -2.9766 -0.8877 27 1 1.5938 -3.9777 0.0030 28 1 0.4226 -2.9754 0.8923 29 1 4.0390 -0.8887 -1.5207 30 1 3.8759 -2.6610 -1.5197 31 1 2.7040 -1.6598 -2.4103 32 1 2.7039 -1.6577 2.4119 33 1 3.8752 -2.6601 1.5226 34 1 4.0390 -0.8874 1.5216 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12201906.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:34:22 Heat of formation + Delta-G solvation = -23.926606 kcal Electronic energy + Delta-G solvation = -14780.198300 eV Core-core repulsion = 12415.820421 eV Total energy + Delta-G solvation = -2364.377880 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.105 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.38191 -37.97884 -35.72106 -33.46733 -31.09084 -29.69422 -28.46934 -28.46448 -27.10868 -25.31299 -23.14416 -20.44351 -18.77909 -18.08321 -17.35901 -16.68667 -16.30628 -15.48484 -14.96840 -14.73565 -14.56353 -14.41794 -14.15253 -14.08295 -13.73960 -13.43745 -13.35254 -13.21565 -13.16402 -13.06672 -12.60214 -12.25978 -12.01100 -11.97983 -11.02935 -10.97302 -10.91673 -10.60898 -10.41686 -10.36986 -9.39136 -0.30276 0.17080 1.05028 1.21831 1.36703 1.44627 1.59373 1.74702 1.84728 2.03629 2.45515 2.85207 3.27141 3.40392 3.59866 3.80232 3.88554 3.89473 4.34218 4.41536 4.58265 4.58846 4.63208 4.66583 4.67834 4.69960 4.71250 4.76176 5.01043 5.07279 5.22522 5.38902 5.49539 5.49930 5.58351 5.72076 6.42328 6.92048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.372 4.372 3 C -0.081 4.081 4 C -0.050 4.050 5 C -0.168 4.168 6 C -0.076 4.076 7 O -0.537 6.537 8 Si 0.944 3.056 9 H -0.246 1.246 10 H -0.249 1.249 11 H -0.248 1.248 12 C 0.086 3.914 13 N -0.471 5.471 14 C 0.098 3.902 15 Si 1.045 2.955 16 C -0.449 4.449 17 C -0.452 4.452 18 C -0.452 4.452 19 H 0.111 0.889 20 H 0.096 0.904 21 H 0.140 0.860 22 H 0.120 0.880 23 H 0.377 0.623 24 H 0.150 0.850 25 H 0.161 0.839 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 -1.590 0.020 1.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.414 4.414 3 C -0.083 4.083 4 C -0.076 4.076 5 C -0.170 4.170 6 C -0.188 4.188 7 O -0.342 6.342 8 Si 0.766 3.234 9 H -0.170 1.170 10 H -0.173 1.173 11 H -0.171 1.171 12 C -0.070 4.070 13 N -0.178 5.178 14 C -0.060 4.060 15 Si 1.237 2.763 16 C -0.557 4.557 17 C -0.559 4.559 18 C -0.559 4.559 19 H 0.129 0.871 20 H 0.115 0.885 21 H 0.158 0.842 22 H 0.138 0.862 23 H 0.225 0.775 24 H 0.167 0.833 25 H 0.178 0.822 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.161 -0.817 -0.474 0.958 hybrid contribution -0.913 -0.257 0.363 1.016 sum -1.075 -1.074 -0.111 1.524 Atomic orbital electron populations 1.24464 0.95732 1.02374 0.93653 1.27976 1.01211 1.07713 1.04469 1.20051 0.94505 0.93938 0.99756 1.21669 1.00827 0.90688 0.94383 1.21297 0.95097 0.97137 1.03502 1.24920 1.04036 0.98907 0.90910 1.86525 1.37393 1.95341 1.14924 0.85749 0.77333 0.78200 0.82131 1.16987 1.17256 1.17123 1.22667 0.91284 0.96370 0.96717 1.67616 1.40743 0.98163 1.11290 1.23141 0.90860 0.96587 0.95384 0.78419 0.66504 0.63504 0.67828 1.26126 1.11291 1.13653 1.04634 1.26210 1.09723 1.04814 1.15176 1.26215 1.09722 1.04804 1.15181 0.87114 0.88540 0.84229 0.86201 0.77544 0.83270 0.82186 0.90986 0.90674 0.90986 0.91054 0.90743 0.90938 0.90935 0.90738 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.17 13.40 28.82 0.39 0.56 16 2 C -0.37 0.27 4.70 -37.57 -0.18 0.09 16 3 C -0.08 -0.09 5.85 -104.87 -0.61 -0.70 16 4 C -0.05 -0.05 9.17 -38.89 -0.36 -0.41 16 5 C -0.17 -0.15 5.35 -104.54 -0.56 -0.71 16 6 C -0.08 0.05 2.82 36.01 0.10 0.15 16 7 O -0.54 0.00 12.84 -35.23 -0.45 -0.45 16 8 Si 0.94 -0.74 25.16 -169.99 -4.28 -5.02 16 9 H -0.25 0.02 7.11 56.52 0.40 0.42 16 10 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 11 H -0.25 0.15 7.04 56.52 0.40 0.55 16 12 C 0.09 0.17 9.84 -17.49 -0.17 -0.01 16 13 N -0.47 -1.56 10.35 -12.92 -0.13 -1.70 16 14 C 0.10 0.17 9.92 -17.13 -0.17 0.00 16 15 Si 1.05 -2.66 10.81 -169.99 -1.84 -4.50 16 16 C -0.45 1.03 7.86 101.05 0.79 1.82 16 17 C -0.45 0.71 8.65 101.05 0.87 1.58 16 18 C -0.45 0.72 8.65 101.05 0.87 1.59 16 19 H 0.11 -0.32 7.05 -52.49 -0.37 -0.69 16 20 H 0.10 -0.15 6.10 -52.48 -0.32 -0.47 16 21 H 0.14 -0.02 6.29 -52.49 -0.33 -0.35 16 22 H 0.12 -0.19 7.96 -51.93 -0.41 -0.60 16 23 H 0.38 -1.14 8.70 45.56 0.40 -0.74 16 24 H 0.15 0.05 4.86 -52.49 -0.26 -0.21 16 25 H 0.16 -0.05 3.74 -52.48 -0.20 -0.25 16 26 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 27 H 0.07 -0.17 7.96 -51.93 -0.41 -0.59 16 28 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 29 H 0.07 -0.08 6.62 -51.92 -0.34 -0.43 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 32 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 34 H 0.07 -0.09 6.57 -51.93 -0.34 -0.43 16 LS Contribution 280.28 15.07 4.22 4.22 Total: 0.00 -4.92 280.28 -5.36 -10.28 By element: Atomic # 1 Polarization: -2.95 SS G_CDS: -3.87 Total: -6.82 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 0.98 Total: 3.97 kcal Atomic # 7 Polarization: -1.56 SS G_CDS: -0.13 Total: -1.70 kcal Atomic # 8 Polarization: 0.00 SS G_CDS: -0.45 Total: -0.45 kcal Atomic # 14 Polarization: -3.40 SS G_CDS: -6.12 Total: -9.51 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -4.92 -5.36 -10.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12201906.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.643 kcal (2) G-P(sol) polarization free energy of solvation -4.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds