Wall clock time and date at job start Mon Mar 8 2021 07:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32602 * 1 3 3 C 1.47752 * 119.99525 * 2 1 4 4 C 1.39572 * 120.13087 * 179.72303 * 3 2 1 5 5 C 1.37962 * 119.98351 * 179.79229 * 4 3 2 6 6 C 1.50699 * 119.84628 * 180.20386 * 5 4 3 7 7 O 1.42900 * 109.46875 * 65.25758 * 6 5 4 8 8 Si 1.86299 * 109.47010 * 185.25365 * 6 5 4 9 9 H 1.48502 * 109.47204 * 59.99901 * 8 6 5 10 10 H 1.48496 * 109.47195 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47237 * 300.00576 * 8 6 5 12 12 C 1.38350 * 120.30760 * 0.46201 * 5 4 3 13 13 C 1.38640 * 120.33820 * 359.78848 * 12 5 4 14 14 C 1.39078 * 119.90774 * 359.97438 * 13 12 5 15 15 O 1.36413 * 108.71807 * 179.97438 * 14 13 12 16 16 C 1.43992 * 105.47979 * 342.73878 * 15 14 13 17 17 O 1.36539 * 131.46048 * 179.97438 * 13 12 5 18 18 Si 1.86800 * 120.00531 * 180.02562 * 2 1 3 19 19 C 1.86305 * 109.46869 * 359.97438 * 18 2 1 20 20 C 1.86293 * 109.47276 * 120.00096 * 18 2 1 21 21 C 1.86296 * 109.46963 * 240.00118 * 18 2 1 22 22 H 1.08002 * 120.00610 * 0.02562 * 1 2 3 23 23 H 1.08005 * 119.99622 * 179.72368 * 1 2 3 24 24 H 1.07999 * 120.00988 * 359.97438 * 4 3 2 25 25 H 1.09002 * 109.47217 * 305.25408 * 6 5 4 26 26 H 0.96696 * 114.00305 * 59.99644 * 7 6 5 27 27 H 1.08001 * 119.83591 * 179.76853 * 12 5 4 28 28 H 1.09005 * 110.57607 * 268.52809 * 16 15 14 29 29 H 1.09003 * 110.70977 * 145.69699 * 16 15 14 30 30 H 1.09000 * 109.46422 * 60.00545 * 19 18 2 31 31 H 1.09002 * 109.46983 * 179.97438 * 19 18 2 32 32 H 1.08995 * 109.47226 * 300.00715 * 19 18 2 33 33 H 1.08995 * 109.47480 * 60.00221 * 20 18 2 34 34 H 1.09002 * 109.46736 * 180.02562 * 20 18 2 35 35 H 1.09002 * 109.47285 * 299.99524 * 20 18 2 36 36 H 1.09004 * 109.47335 * 59.99349 * 21 18 2 37 37 H 1.09002 * 109.47126 * 179.97438 * 21 18 2 38 38 H 1.09008 * 109.47030 * 299.99692 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0647 1.2796 0.0000 4 6 3.4604 1.2829 0.0058 5 6 4.1470 2.4795 0.0015 6 6 5.6540 2.4795 0.0032 7 8 6.1316 1.9103 -1.2175 8 14 6.2749 4.2292 0.1572 9 1 5.7785 4.8208 1.4256 10 1 7.7598 4.2293 0.1582 11 1 5.7811 5.0325 -0.9900 12 6 3.4586 3.6796 0.0010 13 6 2.0722 3.6915 0.0004 14 6 1.3684 2.4920 -0.0002 15 8 0.0325 2.7683 -0.0001 16 6 -0.0755 4.1436 0.4124 17 8 1.1770 4.7226 0.0003 18 14 2.2602 -1.6176 -0.0007 19 6 1.0496 -3.0338 -0.0006 20 6 3.3312 -1.7156 -1.5218 21 6 3.3312 -1.7169 1.5204 22 1 -0.5401 0.9353 -0.0004 23 1 -0.5400 -0.9354 -0.0045 24 1 4.0027 0.3490 0.0108 25 1 6.0164 1.8899 0.8453 26 1 5.8472 2.3849 -2.0105 27 1 4.0038 4.6119 0.0013 28 1 -0.1916 4.2112 1.4941 29 1 -0.9082 4.6333 -0.0926 30 1 0.4227 -2.9758 -0.8904 31 1 1.5946 -3.9777 -0.0015 32 1 0.4232 -2.9762 0.8896 33 1 4.0395 -0.8871 -1.5215 34 1 3.8759 -2.6597 -1.5224 35 1 2.7046 -1.6576 -2.4118 36 1 2.7045 -1.6595 2.4104 37 1 3.8759 -2.6610 1.5202 38 1 4.0395 -0.8883 1.5207 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12203822.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:36:04 Heat of formation + Delta-G solvation = -86.530628 kcal Electronic energy + Delta-G solvation = -20465.419846 eV Core-core repulsion = 17398.162638 eV Total energy + Delta-G solvation = -3067.257207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.21614 -39.78009 -37.67726 -37.21728 -34.71315 -31.51116 -30.93413 -29.55795 -28.37913 -28.29648 -27.39322 -26.09228 -24.18715 -23.40011 -20.75518 -19.15411 -18.72503 -18.39654 -17.55102 -17.07426 -16.23707 -16.03834 -15.86732 -15.62469 -15.08279 -14.86415 -14.30476 -14.25498 -14.12881 -14.00474 -13.91644 -13.87816 -13.49302 -13.27270 -13.20553 -13.08421 -12.91124 -12.66875 -12.26373 -12.16547 -12.09783 -11.74105 -11.44847 -10.91690 -10.75465 -10.66348 -10.45043 -9.24147 -9.02811 -0.20265 0.07813 1.10526 1.25148 1.41523 1.49614 1.59705 1.80243 1.84335 1.89225 2.08645 2.38057 2.56634 2.69211 3.35866 3.43992 3.62459 3.69059 3.91503 3.98970 4.06796 4.12670 4.27815 4.51190 4.68303 4.69761 4.74758 4.75730 4.76728 4.80775 4.82527 4.91793 5.02285 5.06800 5.22786 5.35946 5.45317 5.52106 5.56526 5.61291 5.81351 6.10351 6.50445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.380 4.380 3 C -0.006 4.006 4 C -0.089 4.089 5 C -0.106 4.106 6 C -0.075 4.075 7 O -0.535 6.535 8 Si 0.943 3.057 9 H -0.248 1.248 10 H -0.250 1.250 11 H -0.250 1.250 12 C -0.115 4.115 13 C 0.043 3.957 14 C 0.037 3.963 15 O -0.301 6.301 16 C 0.208 3.792 17 O -0.307 6.307 18 Si 1.046 2.954 19 C -0.450 4.450 20 C -0.450 4.450 21 C -0.450 4.450 22 H 0.111 0.889 23 H 0.107 0.893 24 H 0.148 0.852 25 H 0.124 0.876 26 H 0.378 0.622 27 H 0.132 0.868 28 H 0.086 0.914 29 H 0.133 0.867 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.483 -0.841 0.948 1.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.421 4.421 3 C -0.007 4.007 4 C -0.107 4.107 5 C -0.107 4.107 6 C -0.186 4.186 7 O -0.340 6.340 8 Si 0.766 3.234 9 H -0.172 1.172 10 H -0.174 1.174 11 H -0.174 1.174 12 C -0.134 4.134 13 C -0.002 4.002 14 C -0.007 4.007 15 O -0.217 6.217 16 C 0.096 3.904 17 O -0.224 6.224 18 Si 1.238 2.762 19 C -0.558 4.558 20 C -0.558 4.558 21 C -0.558 4.558 22 H 0.128 0.872 23 H 0.125 0.875 24 H 0.166 0.834 25 H 0.142 0.858 26 H 0.225 0.775 27 H 0.150 0.850 28 H 0.104 0.896 29 H 0.151 0.849 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.128 -0.230 1.337 1.362 hybrid contribution -0.977 0.396 -0.303 1.097 sum -1.106 0.166 1.033 1.522 Atomic orbital electron populations 1.24767 0.95994 1.02781 0.92750 1.28001 1.01201 1.07490 1.05390 1.18184 0.92125 0.89572 1.00833 1.21040 0.91397 0.98592 0.99697 1.19901 0.96440 0.92065 1.02304 1.24913 0.90712 1.11843 0.91135 1.86526 1.75381 1.57203 1.14896 0.85762 0.80907 0.74722 0.82007 1.17208 1.17425 1.17391 1.19920 0.89634 0.98698 1.05101 1.19576 0.91835 0.85284 1.03483 1.19993 0.82360 0.94353 1.04034 1.87354 1.20883 1.28891 1.84606 1.25736 0.87405 0.76807 1.00407 1.87405 1.18871 1.31277 1.84797 0.78405 0.66414 0.63359 0.68019 1.26142 1.11350 1.13732 1.04562 1.26195 1.09747 1.04898 1.14958 1.26202 1.09696 1.04758 1.15101 0.87158 0.87467 0.83413 0.85829 0.77462 0.85013 0.89641 0.84917 0.91056 0.90737 0.91077 0.90580 0.90938 0.91094 0.91038 0.90852 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.09 13.39 28.83 0.39 0.29 16 2 C -0.38 -0.26 4.70 -37.60 -0.18 -0.44 16 3 C -0.01 -0.01 5.84 -104.92 -0.61 -0.63 16 4 C -0.09 -0.07 8.33 -39.19 -0.33 -0.40 16 5 C -0.11 -0.07 5.34 -104.68 -0.56 -0.63 16 6 C -0.08 0.07 2.79 36.01 0.10 0.17 16 7 O -0.53 0.25 12.83 -35.23 -0.45 -0.20 16 8 Si 0.94 -0.58 25.12 -169.99 -4.27 -4.85 16 9 H -0.25 -0.03 7.11 56.52 0.40 0.37 16 10 H -0.25 -0.14 7.11 56.52 0.40 0.26 16 11 H -0.25 0.05 7.04 56.52 0.40 0.44 16 12 C -0.12 -0.20 8.67 -39.39 -0.34 -0.54 16 13 C 0.04 0.14 7.15 -39.12 -0.28 -0.14 16 14 C 0.04 0.12 6.64 -38.68 -0.26 -0.14 16 15 O -0.30 -0.75 8.63 -45.41 -0.39 -1.14 16 16 C 0.21 0.02 8.89 101.05 0.90 0.92 16 17 O -0.31 -0.92 11.41 -45.82 -0.52 -1.44 16 18 Si 1.05 -1.86 10.79 -169.99 -1.83 -3.70 16 19 C -0.45 0.67 7.87 101.05 0.79 1.46 16 20 C -0.45 0.45 8.65 101.05 0.87 1.32 16 21 C -0.45 0.61 8.65 101.05 0.87 1.48 16 22 H 0.11 0.20 4.95 -52.49 -0.26 -0.06 16 23 H 0.11 -0.12 7.05 -52.48 -0.37 -0.49 16 24 H 0.15 -0.13 3.70 -52.49 -0.19 -0.33 16 25 H 0.12 -0.28 7.96 -51.93 -0.41 -0.69 16 26 H 0.38 -1.28 8.70 45.56 0.40 -0.88 16 27 H 0.13 0.08 4.83 -52.49 -0.25 -0.18 16 28 H 0.09 -0.15 8.14 -51.93 -0.42 -0.57 16 29 H 0.13 -0.36 8.14 -51.93 -0.42 -0.78 16 30 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 32 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 33 H 0.08 -0.06 6.59 -51.93 -0.34 -0.40 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 35 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 36 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 37 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 38 H 0.07 -0.10 6.55 -51.92 -0.34 -0.44 16 LS Contribution 309.32 15.07 4.66 4.66 Total: 0.00 -5.53 309.32 -5.75 -11.28 By element: Atomic # 1 Polarization: -3.02 SS G_CDS: -4.32 Total: -7.34 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 1.37 Total: 2.73 kcal Atomic # 8 Polarization: -1.42 SS G_CDS: -1.37 Total: -2.78 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: -6.11 Total: -8.55 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -5.53 -5.75 -11.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12203822.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.252 kcal (2) G-P(sol) polarization free energy of solvation -5.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds