Wall clock time and date at job start Mon Mar 8 2021 07:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32602 * 1 3 3 C 1.47752 * 119.99525 * 2 1 4 4 C 1.39572 * 120.13087 * 179.72303 * 3 2 1 5 5 C 1.37962 * 119.98351 * 179.79229 * 4 3 2 6 6 C 1.50699 * 119.84628 * 180.20386 * 5 4 3 7 7 O 1.42900 * 109.46875 * 65.25758 * 6 5 4 8 8 Si 1.86299 * 109.47010 * 185.25365 * 6 5 4 9 9 H 1.48502 * 109.47204 * 59.99901 * 8 6 5 10 10 H 1.48496 * 109.47195 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47237 * 300.00576 * 8 6 5 12 12 C 1.38350 * 120.30760 * 0.46201 * 5 4 3 13 13 C 1.38640 * 120.33820 * 359.78848 * 12 5 4 14 14 C 1.39078 * 119.90774 * 359.97438 * 13 12 5 15 15 O 1.36413 * 108.71807 * 179.97438 * 14 13 12 16 16 C 1.43992 * 105.47979 * 342.73878 * 15 14 13 17 17 O 1.36539 * 131.46048 * 179.97438 * 13 12 5 18 18 Si 1.86800 * 120.00531 * 180.02562 * 2 1 3 19 19 C 1.86305 * 109.46869 * 359.97438 * 18 2 1 20 20 C 1.86293 * 109.47276 * 120.00096 * 18 2 1 21 21 C 1.86296 * 109.46963 * 240.00118 * 18 2 1 22 22 H 1.08002 * 120.00610 * 0.02562 * 1 2 3 23 23 H 1.08005 * 119.99622 * 179.72368 * 1 2 3 24 24 H 1.07999 * 120.00988 * 359.97438 * 4 3 2 25 25 H 1.09002 * 109.47217 * 305.25408 * 6 5 4 26 26 H 0.96696 * 114.00305 * 59.99644 * 7 6 5 27 27 H 1.08001 * 119.83591 * 179.76853 * 12 5 4 28 28 H 1.09005 * 110.57607 * 268.52809 * 16 15 14 29 29 H 1.09003 * 110.70977 * 145.69699 * 16 15 14 30 30 H 1.09000 * 109.46422 * 60.00545 * 19 18 2 31 31 H 1.09002 * 109.46983 * 179.97438 * 19 18 2 32 32 H 1.08995 * 109.47226 * 300.00715 * 19 18 2 33 33 H 1.08995 * 109.47480 * 60.00221 * 20 18 2 34 34 H 1.09002 * 109.46736 * 180.02562 * 20 18 2 35 35 H 1.09002 * 109.47285 * 299.99524 * 20 18 2 36 36 H 1.09004 * 109.47335 * 59.99349 * 21 18 2 37 37 H 1.09002 * 109.47126 * 179.97438 * 21 18 2 38 38 H 1.09008 * 109.47030 * 299.99692 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0647 1.2796 0.0000 4 6 3.4604 1.2829 0.0058 5 6 4.1470 2.4795 0.0015 6 6 5.6540 2.4795 0.0032 7 8 6.1316 1.9103 -1.2175 8 14 6.2749 4.2292 0.1572 9 1 5.7785 4.8208 1.4256 10 1 7.7598 4.2293 0.1582 11 1 5.7811 5.0325 -0.9900 12 6 3.4586 3.6796 0.0010 13 6 2.0722 3.6915 0.0004 14 6 1.3684 2.4920 -0.0002 15 8 0.0325 2.7683 -0.0001 16 6 -0.0755 4.1436 0.4124 17 8 1.1770 4.7226 0.0003 18 14 2.2602 -1.6176 -0.0007 19 6 1.0496 -3.0338 -0.0006 20 6 3.3312 -1.7156 -1.5218 21 6 3.3312 -1.7169 1.5204 22 1 -0.5401 0.9353 -0.0004 23 1 -0.5400 -0.9354 -0.0045 24 1 4.0027 0.3490 0.0108 25 1 6.0164 1.8899 0.8453 26 1 5.8472 2.3849 -2.0105 27 1 4.0038 4.6119 0.0013 28 1 -0.1916 4.2112 1.4941 29 1 -0.9082 4.6333 -0.0926 30 1 0.4227 -2.9758 -0.8904 31 1 1.5946 -3.9777 -0.0015 32 1 0.4232 -2.9762 0.8896 33 1 4.0395 -0.8871 -1.5215 34 1 3.8759 -2.6597 -1.5224 35 1 2.7046 -1.6576 -2.4118 36 1 2.7045 -1.6595 2.4104 37 1 3.8759 -2.6610 1.5202 38 1 4.0395 -0.8883 1.5207 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12203822.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:36:04 Heat of formation + Delta-G solvation = -80.662738 kcal Electronic energy + Delta-G solvation = -20465.165395 eV Core-core repulsion = 17398.162638 eV Total energy + Delta-G solvation = -3067.002756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.30038 -39.82039 -37.73589 -37.24014 -34.74561 -31.56881 -30.96696 -29.42882 -28.24467 -28.17218 -27.39718 -26.12261 -24.26176 -23.46493 -20.79498 -19.21326 -18.77943 -18.43270 -17.57798 -17.10804 -16.22773 -16.04881 -15.90230 -15.62616 -15.16837 -14.87998 -14.31302 -14.18087 -14.14193 -13.99421 -13.87154 -13.81742 -13.44039 -13.12966 -13.09455 -12.95779 -12.88440 -12.65378 -12.26085 -12.15710 -12.10112 -11.75506 -11.44899 -10.79077 -10.72642 -10.59585 -10.41115 -9.32190 -9.12607 -0.29451 -0.02593 1.15241 1.24414 1.44070 1.51573 1.60979 1.84811 1.90409 1.99201 2.16320 2.37540 2.62693 2.67296 3.30140 3.48250 3.65831 3.74086 3.93657 3.94677 4.01654 4.13091 4.24139 4.59264 4.72568 4.80191 4.84892 4.85779 4.89476 4.90023 4.92520 4.93972 4.95946 5.03185 5.17676 5.31850 5.45678 5.61608 5.70916 5.72431 5.79372 6.01665 6.70276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.393 4.393 3 C -0.019 4.019 4 C -0.090 4.090 5 C -0.102 4.102 6 C -0.068 4.068 7 O -0.544 6.544 8 Si 0.969 3.031 9 H -0.260 1.260 10 H -0.265 1.265 11 H -0.258 1.258 12 C -0.124 4.124 13 C 0.022 3.978 14 C 0.017 3.983 15 O -0.313 6.313 16 C 0.199 3.801 17 O -0.326 6.326 18 Si 1.099 2.901 19 C -0.460 4.460 20 C -0.462 4.462 21 C -0.460 4.460 22 H 0.096 0.904 23 H 0.125 0.875 24 H 0.166 0.834 25 H 0.141 0.859 26 H 0.390 0.610 27 H 0.138 0.862 28 H 0.101 0.899 29 H 0.158 0.842 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.046 -1.790 1.086 2.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.432 4.432 3 C -0.019 4.019 4 C -0.108 4.108 5 C -0.103 4.103 6 C -0.180 4.180 7 O -0.351 6.351 8 Si 0.794 3.206 9 H -0.184 1.184 10 H -0.190 1.190 11 H -0.183 1.183 12 C -0.142 4.142 13 C -0.022 4.022 14 C -0.027 4.027 15 O -0.230 6.230 16 C 0.089 3.911 17 O -0.242 6.242 18 Si 1.288 2.712 19 C -0.567 4.567 20 C -0.568 4.568 21 C -0.567 4.567 22 H 0.114 0.886 23 H 0.143 0.857 24 H 0.183 0.817 25 H 0.159 0.841 26 H 0.239 0.761 27 H 0.156 0.844 28 H 0.119 0.881 29 H 0.176 0.824 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.294 -1.154 1.462 1.886 hybrid contribution -1.127 0.735 -0.356 1.392 sum -0.833 -0.419 1.107 1.447 Atomic orbital electron populations 1.24894 0.96291 1.02993 0.93185 1.28594 1.01505 1.08239 1.04866 1.18535 0.92827 0.89884 1.00700 1.21286 0.91070 0.99379 0.99029 1.20091 0.97240 0.91619 1.01343 1.24908 0.89473 1.11816 0.91759 1.86502 1.75437 1.57652 1.15481 0.85400 0.79486 0.74748 0.80960 1.18422 1.18981 1.18256 1.20142 0.89385 0.99519 1.05194 1.19856 0.92455 0.85486 1.04391 1.20276 0.82669 0.94882 1.04911 1.87328 1.20790 1.29981 1.84911 1.26138 0.87157 0.76047 1.01777 1.87357 1.19797 1.31896 1.85183 0.77635 0.65227 0.61323 0.67062 1.26238 1.11642 1.14157 1.04695 1.26325 1.10008 1.05187 1.15329 1.26301 1.09973 1.05248 1.15217 0.88628 0.85710 0.81715 0.84097 0.76116 0.84417 0.88097 0.82441 0.91034 0.90247 0.90895 0.90758 0.90283 0.91518 0.91220 0.90146 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.30 13.39 66.66 0.89 0.59 16 2 C -0.39 -0.67 4.70 23.63 0.11 -0.55 16 3 C -0.02 -0.09 5.84 -20.06 -0.12 -0.21 16 4 C -0.09 -0.14 8.33 22.53 0.19 0.05 16 5 C -0.10 -0.13 5.34 -19.90 -0.11 -0.24 16 6 C -0.07 0.16 2.79 71.24 0.20 0.36 16 7 O -0.54 0.98 12.83 -148.98 -1.91 -0.93 16 8 Si 0.97 -1.04 25.12 68.60 1.72 0.68 16 9 H -0.26 -0.19 7.11 99.48 0.71 0.52 16 10 H -0.27 -0.36 7.11 99.48 0.71 0.34 16 11 H -0.26 -0.02 7.04 99.48 0.70 0.68 16 12 C -0.12 -0.54 8.67 22.39 0.19 -0.35 16 13 C 0.02 0.17 7.15 22.57 0.16 0.34 16 14 C 0.02 0.13 6.64 22.85 0.15 0.28 16 15 O -0.31 -2.04 8.63 -75.02 -0.65 -2.68 16 16 C 0.20 0.24 8.89 113.37 1.01 1.25 16 17 O -0.33 -2.41 11.41 -76.50 -0.87 -3.28 16 18 Si 1.10 -4.64 10.79 68.60 0.74 -3.90 16 19 C -0.46 1.75 7.87 113.37 0.89 2.64 16 20 C -0.46 1.26 8.65 113.37 0.98 2.24 16 21 C -0.46 1.71 8.65 113.37 0.98 2.69 16 22 H 0.10 0.49 4.95 -2.91 -0.01 0.48 16 23 H 0.12 -0.28 7.05 -2.91 -0.02 -0.30 16 24 H 0.17 -0.43 3.70 -2.91 -0.01 -0.44 16 25 H 0.14 -0.82 7.96 -2.39 -0.02 -0.84 16 26 H 0.39 -2.84 8.70 -74.06 -0.64 -3.49 16 27 H 0.14 0.30 4.83 -2.91 -0.01 0.28 16 28 H 0.10 -0.27 8.14 -2.38 -0.02 -0.29 16 29 H 0.16 -0.78 8.14 -2.39 -0.02 -0.80 16 30 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 31 H 0.08 -0.36 7.96 -2.39 -0.02 -0.38 16 32 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 33 H 0.07 -0.17 6.59 -2.39 -0.02 -0.19 16 34 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 35 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 36 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 37 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 38 H 0.07 -0.30 6.55 -2.38 -0.02 -0.31 16 Total: 0.00 -13.21 309.32 5.76 -7.46 By element: Atomic # 1 Polarization: -7.61 SS G_CDS: 1.19 Total: -6.42 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 5.54 Total: 9.09 kcal Atomic # 8 Polarization: -3.47 SS G_CDS: -3.43 Total: -6.90 kcal Atomic # 14 Polarization: -5.69 SS G_CDS: 2.46 Total: -3.22 kcal Total: -13.21 5.76 -7.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12203822.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.207 kcal (2) G-P(sol) polarization free energy of solvation -13.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds