Wall clock time and date at job start Mon Mar 8 2021 07:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32598 * 1 3 3 C 1.47778 * 120.00012 * 2 1 4 4 C 1.39555 * 120.08202 * 179.97438 * 3 2 1 5 5 C 1.37881 * 119.90990 * 180.02562 * 4 3 2 6 6 C 1.38844 * 120.08523 * 0.02562 * 5 4 3 7 7 O 1.35865 * 119.91021 * 179.97438 * 6 5 4 8 8 C 1.42892 * 117.00292 * 0.02562 * 7 6 5 9 9 C 1.38874 * 120.17110 * 359.97438 * 6 5 4 10 10 C 1.50701 * 119.95477 * 180.02562 * 9 6 5 11 11 O 1.42895 * 109.47079 * 75.00851 * 10 9 6 12 12 Si 1.86301 * 109.47149 * 195.00347 * 10 9 6 13 13 H 1.48506 * 109.47302 * 59.99966 * 12 10 9 14 14 H 1.48503 * 109.47334 * 300.00099 * 12 10 9 15 15 H 1.48500 * 109.47376 * 180.02562 * 12 10 9 16 16 C 1.37838 * 120.08862 * 0.27810 * 9 6 5 17 17 Si 1.86796 * 119.99952 * 180.02562 * 2 1 3 18 18 C 1.86298 * 109.47408 * 239.99683 * 17 2 1 19 19 C 1.86303 * 109.47238 * 0.02562 * 17 2 1 20 20 C 1.86305 * 109.46959 * 119.99849 * 17 2 1 21 21 H 1.08002 * 119.99845 * 179.97438 * 1 2 3 22 22 H 1.08001 * 120.00057 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.05203 * 0.02562 * 4 3 2 24 24 H 1.07997 * 119.95760 * 179.97438 * 5 4 3 25 25 H 1.09006 * 109.47317 * 60.00204 * 8 7 6 26 26 H 1.08999 * 109.47141 * 179.97438 * 8 7 6 27 27 H 1.08997 * 109.47249 * 300.00241 * 8 7 6 28 28 H 1.09001 * 109.47380 * 315.00248 * 10 9 6 29 29 H 0.96708 * 113.99763 * 299.99687 * 11 10 9 30 30 H 1.08000 * 120.04611 * 179.71695 * 16 9 6 31 31 H 1.09001 * 109.46768 * 60.00151 * 18 17 2 32 32 H 1.08999 * 109.47285 * 180.02562 * 18 17 2 33 33 H 1.08998 * 109.47040 * 300.00355 * 18 17 2 34 34 H 1.09002 * 109.46912 * 60.00043 * 19 17 2 35 35 H 1.08999 * 109.47088 * 179.97438 * 19 17 2 36 36 H 1.09001 * 109.47033 * 299.99907 * 19 17 2 37 37 H 1.09000 * 109.47409 * 60.00308 * 20 17 2 38 38 H 1.08999 * 109.47233 * 179.97438 * 20 17 2 39 39 H 1.08994 * 109.47263 * 299.99946 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0649 1.2798 0.0000 4 6 3.4604 1.2818 0.0005 5 6 4.1462 2.4779 0.0011 6 6 3.4502 3.6793 0.0016 7 8 4.1296 4.8559 0.0027 8 6 5.5565 4.7811 0.0026 9 6 2.0615 3.6813 0.0011 10 6 1.3109 4.9882 0.0011 11 8 1.3764 5.5750 -1.3001 12 14 -0.4698 4.6816 0.4550 13 1 -0.5380 4.0716 1.8073 14 1 -1.0814 3.7595 -0.5353 15 1 -1.2095 5.9692 0.4544 16 6 1.3687 2.4897 0.0058 17 14 2.2599 -1.6177 -0.0007 18 6 3.3311 -1.7171 1.5203 19 6 1.0493 -3.0338 -0.0021 20 6 3.3310 -1.7157 -1.5220 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5400 0.9353 0.0004 23 1 4.0026 0.3478 0.0005 24 1 5.2262 2.4804 0.0019 25 1 5.8925 4.2498 -0.8879 26 1 5.9732 5.7883 0.0030 27 1 5.8925 4.2481 0.8920 28 1 1.7598 5.6650 0.7280 29 1 2.2757 5.7625 -1.6022 30 1 0.2887 2.4921 0.0100 31 1 2.7045 -1.6598 2.4103 32 1 3.8764 -2.6609 1.5196 33 1 4.0394 -0.8886 1.5206 34 1 0.4230 -2.9754 -0.8924 35 1 1.5943 -3.9777 -0.0030 36 1 0.4223 -2.9766 0.8877 37 1 4.0394 -0.8873 -1.5216 38 1 3.8763 -2.6595 -1.5222 39 1 2.7044 -1.6576 -2.4119 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12398912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:39:54 Heat of formation + Delta-G solvation = -72.873000 kcal Electronic energy + Delta-G solvation = -18585.165780 eV Core-core repulsion = 15809.871525 eV Total energy + Delta-G solvation = -2775.294255 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.125 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39034 -38.83675 -37.52626 -34.45828 -32.84734 -30.10051 -29.61592 -28.70284 -28.43640 -28.02975 -26.58325 -23.97806 -22.57580 -20.23018 -19.27924 -18.19543 -17.34735 -16.86862 -16.59263 -16.27486 -15.61518 -15.17468 -15.02767 -14.63030 -14.26606 -14.12990 -14.04877 -13.96094 -13.68369 -13.42070 -13.32472 -13.28833 -13.13008 -12.99286 -12.70085 -12.44274 -12.35157 -12.15848 -11.70301 -11.27775 -11.21642 -11.00087 -10.93240 -10.63114 -10.49711 -9.93026 -8.71989 0.01827 0.27444 1.26768 1.33106 1.57060 1.60695 1.68507 1.81049 2.03581 2.09383 2.23379 2.51925 2.89260 3.62743 3.78031 3.86079 4.01381 4.04719 4.15794 4.21575 4.30666 4.43814 4.51791 4.57299 4.66635 4.66767 4.70882 4.71847 4.73730 4.75124 4.82091 4.91471 5.10376 5.25216 5.37291 5.41948 5.47009 5.51368 5.55481 5.72122 5.91028 6.33933 6.68719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.365 4.365 3 C -0.062 4.062 4 C -0.080 4.080 5 C -0.200 4.200 6 C 0.135 3.865 7 O -0.317 6.317 8 C 0.026 3.974 9 C -0.141 4.141 10 C -0.082 4.082 11 O -0.538 6.538 12 Si 1.010 2.990 13 H -0.248 1.248 14 H -0.252 1.252 15 H -0.255 1.255 16 C -0.085 4.085 17 Si 1.046 2.954 18 C -0.450 4.450 19 C -0.450 4.450 20 C -0.450 4.450 21 H 0.109 0.891 22 H 0.093 0.907 23 H 0.133 0.867 24 H 0.133 0.867 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.369 0.631 30 H 0.131 0.869 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.665 -1.874 0.941 3.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.407 4.407 3 C -0.062 4.062 4 C -0.098 4.098 5 C -0.218 4.218 6 C 0.090 3.910 7 O -0.230 6.230 8 C -0.069 4.069 9 C -0.142 4.142 10 C -0.190 4.190 11 O -0.344 6.344 12 Si 0.830 3.170 13 H -0.171 1.171 14 H -0.176 1.176 15 H -0.179 1.179 16 C -0.103 4.103 17 Si 1.238 2.762 18 C -0.557 4.557 19 C -0.558 4.558 20 C -0.557 4.557 21 H 0.127 0.873 22 H 0.111 0.889 23 H 0.151 0.849 24 H 0.151 0.849 25 H 0.076 0.924 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.217 0.783 30 H 0.149 0.851 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.080 -1.802 1.203 2.420 hybrid contribution 1.498 0.130 -0.187 1.515 sum 2.578 -1.672 1.016 3.236 Atomic orbital electron populations 1.24403 0.95864 1.02039 0.95504 1.28013 1.01094 1.08079 1.03499 1.18779 0.92810 0.92713 1.01907 1.21207 0.93376 0.97762 0.97420 1.21200 1.00390 0.91938 1.08287 1.18852 0.90883 0.84885 0.96424 1.86020 1.20566 1.27959 1.88494 1.23116 0.77834 1.04355 1.01590 1.19545 0.90955 0.96359 1.07302 1.25186 1.13005 0.92074 0.88778 1.86676 1.32927 1.82851 1.31903 0.84541 0.72247 0.80648 0.79570 1.17117 1.17615 1.17869 1.21151 0.99866 0.91073 0.98216 0.78400 0.66506 0.63617 0.67714 1.26202 1.09683 1.04553 1.15281 1.26137 1.11356 1.13635 1.04635 1.26204 1.09687 1.04537 1.15308 0.87326 0.88904 0.84927 0.84947 0.92396 0.87918 0.92432 0.90571 0.78336 0.85123 0.90952 0.90979 0.91111 0.91002 0.90820 0.91007 0.91121 0.90988 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.01 13.39 28.83 0.39 0.37 16 2 C -0.37 -0.15 4.70 -37.59 -0.18 -0.32 16 3 C -0.06 -0.12 5.84 -105.00 -0.61 -0.73 16 4 C -0.08 -0.07 8.70 -39.22 -0.34 -0.41 16 5 C -0.20 -0.19 9.02 -39.49 -0.36 -0.54 16 6 C 0.13 0.29 6.62 -39.12 -0.26 0.03 16 7 O -0.32 -0.37 9.37 -19.32 -0.18 -0.55 16 8 C 0.03 -0.05 9.81 101.05 0.99 0.94 16 9 C -0.14 -0.40 5.28 -104.53 -0.55 -0.95 16 10 C -0.08 -0.19 2.33 36.01 0.08 -0.10 16 11 O -0.54 -1.62 12.65 -35.23 -0.45 -2.06 16 12 Si 1.01 1.82 25.73 -169.99 -4.37 -2.55 16 13 H -0.25 -0.33 7.11 56.52 0.40 0.08 16 14 H -0.25 -0.55 6.74 56.52 0.38 -0.17 16 15 H -0.25 -0.66 7.11 56.52 0.40 -0.25 16 16 C -0.09 -0.23 8.00 -39.22 -0.31 -0.55 16 17 Si 1.05 -2.06 10.79 -169.99 -1.83 -3.89 16 18 C -0.45 0.64 8.65 101.05 0.87 1.51 16 19 C -0.45 0.75 7.86 101.05 0.79 1.54 16 20 C -0.45 0.58 8.65 101.05 0.87 1.45 16 21 H 0.11 -0.19 7.05 -52.49 -0.37 -0.56 16 22 H 0.09 0.02 6.03 -52.49 -0.32 -0.30 16 23 H 0.13 -0.17 3.69 -52.49 -0.19 -0.36 16 24 H 0.13 -0.18 6.28 -52.49 -0.33 -0.51 16 25 H 0.06 -0.16 7.66 -51.93 -0.40 -0.56 16 26 H 0.10 -0.36 8.14 -51.93 -0.42 -0.78 16 27 H 0.06 -0.15 7.65 -51.93 -0.40 -0.55 16 28 H 0.08 0.10 7.82 -51.93 -0.41 -0.30 16 29 H 0.37 0.29 8.59 45.56 0.39 0.68 16 30 H 0.13 0.25 2.98 -52.49 -0.16 0.09 16 31 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 33 H 0.07 -0.10 6.57 -51.93 -0.34 -0.44 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 36 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 37 H 0.07 -0.09 6.57 -51.93 -0.34 -0.43 16 38 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 39 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 LS Contribution 313.13 15.07 4.72 4.72 Total: 0.00 -4.43 313.13 -5.72 -10.15 By element: Atomic # 1 Polarization: -3.04 SS G_CDS: -4.99 Total: -8.03 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 1.39 Total: 2.23 kcal Atomic # 8 Polarization: -1.99 SS G_CDS: -0.63 Total: -2.62 kcal Atomic # 14 Polarization: -0.24 SS G_CDS: -6.21 Total: -6.45 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -4.43 -5.72 -10.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12398912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.725 kcal (2) G-P(sol) polarization free energy of solvation -4.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds