Wall clock time and date at job start Mon Mar 8 2021 07:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32598 * 1 3 3 C 1.47778 * 120.00012 * 2 1 4 4 C 1.39555 * 120.08202 * 179.97438 * 3 2 1 5 5 C 1.37881 * 119.90990 * 180.02562 * 4 3 2 6 6 C 1.38844 * 120.08523 * 0.02562 * 5 4 3 7 7 O 1.35865 * 119.91021 * 179.97438 * 6 5 4 8 8 C 1.42892 * 117.00292 * 0.02562 * 7 6 5 9 9 C 1.38874 * 120.17110 * 359.97438 * 6 5 4 10 10 C 1.50701 * 119.95477 * 180.02562 * 9 6 5 11 11 O 1.42895 * 109.47079 * 75.00851 * 10 9 6 12 12 Si 1.86301 * 109.47149 * 195.00347 * 10 9 6 13 13 H 1.48506 * 109.47302 * 59.99966 * 12 10 9 14 14 H 1.48503 * 109.47334 * 300.00099 * 12 10 9 15 15 H 1.48500 * 109.47376 * 180.02562 * 12 10 9 16 16 C 1.37838 * 120.08862 * 0.27810 * 9 6 5 17 17 Si 1.86796 * 119.99952 * 180.02562 * 2 1 3 18 18 C 1.86298 * 109.47408 * 239.99683 * 17 2 1 19 19 C 1.86303 * 109.47238 * 0.02562 * 17 2 1 20 20 C 1.86305 * 109.46959 * 119.99849 * 17 2 1 21 21 H 1.08002 * 119.99845 * 179.97438 * 1 2 3 22 22 H 1.08001 * 120.00057 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.05203 * 0.02562 * 4 3 2 24 24 H 1.07997 * 119.95760 * 179.97438 * 5 4 3 25 25 H 1.09006 * 109.47317 * 60.00204 * 8 7 6 26 26 H 1.08999 * 109.47141 * 179.97438 * 8 7 6 27 27 H 1.08997 * 109.47249 * 300.00241 * 8 7 6 28 28 H 1.09001 * 109.47380 * 315.00248 * 10 9 6 29 29 H 0.96708 * 113.99763 * 299.99687 * 11 10 9 30 30 H 1.08000 * 120.04611 * 179.71695 * 16 9 6 31 31 H 1.09001 * 109.46768 * 60.00151 * 18 17 2 32 32 H 1.08999 * 109.47285 * 180.02562 * 18 17 2 33 33 H 1.08998 * 109.47040 * 300.00355 * 18 17 2 34 34 H 1.09002 * 109.46912 * 60.00043 * 19 17 2 35 35 H 1.08999 * 109.47088 * 179.97438 * 19 17 2 36 36 H 1.09001 * 109.47033 * 299.99907 * 19 17 2 37 37 H 1.09000 * 109.47409 * 60.00308 * 20 17 2 38 38 H 1.08999 * 109.47233 * 179.97438 * 20 17 2 39 39 H 1.08994 * 109.47263 * 299.99946 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0649 1.2798 0.0000 4 6 3.4604 1.2818 0.0005 5 6 4.1462 2.4779 0.0011 6 6 3.4502 3.6793 0.0016 7 8 4.1296 4.8559 0.0027 8 6 5.5565 4.7811 0.0026 9 6 2.0615 3.6813 0.0011 10 6 1.3109 4.9882 0.0011 11 8 1.3764 5.5750 -1.3001 12 14 -0.4698 4.6816 0.4550 13 1 -0.5380 4.0716 1.8073 14 1 -1.0814 3.7595 -0.5353 15 1 -1.2095 5.9692 0.4544 16 6 1.3687 2.4897 0.0058 17 14 2.2599 -1.6177 -0.0007 18 6 3.3311 -1.7171 1.5203 19 6 1.0493 -3.0338 -0.0021 20 6 3.3310 -1.7157 -1.5220 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5400 0.9353 0.0004 23 1 4.0026 0.3478 0.0005 24 1 5.2262 2.4804 0.0019 25 1 5.8925 4.2498 -0.8879 26 1 5.9732 5.7883 0.0030 27 1 5.8925 4.2481 0.8920 28 1 1.7598 5.6650 0.7280 29 1 2.2757 5.7625 -1.6022 30 1 0.2887 2.4921 0.0100 31 1 2.7045 -1.6598 2.4103 32 1 3.8764 -2.6609 1.5196 33 1 4.0394 -0.8886 1.5206 34 1 0.4230 -2.9754 -0.8924 35 1 1.5943 -3.9777 -0.0030 36 1 0.4223 -2.9766 0.8877 37 1 4.0394 -0.8873 -1.5216 38 1 3.8763 -2.6595 -1.5222 39 1 2.7044 -1.6576 -2.4119 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12398912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:39:54 Heat of formation + Delta-G solvation = -65.145557 kcal Electronic energy + Delta-G solvation = -18584.830692 eV Core-core repulsion = 15809.871525 eV Total energy + Delta-G solvation = -2774.959167 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.125 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.43386 -38.85498 -37.68859 -34.46313 -32.93105 -30.08901 -29.48365 -28.56265 -28.28981 -27.93656 -26.68840 -24.00719 -22.65119 -20.24623 -19.30935 -18.33646 -17.39971 -16.87235 -16.59677 -16.36320 -15.68482 -15.24444 -14.97564 -14.71254 -14.25036 -14.05091 -13.93090 -13.90431 -13.69407 -13.31392 -13.20689 -13.15064 -12.99172 -12.92733 -12.66576 -12.39142 -12.33426 -12.30264 -11.89110 -11.31122 -11.20463 -11.12505 -10.79320 -10.63419 -10.43689 -10.02904 -8.77327 -0.04108 0.17778 1.11462 1.33091 1.42069 1.42943 1.80670 1.85833 1.97999 2.19868 2.27620 2.64263 2.82901 3.55325 3.72676 3.85048 3.91335 4.10999 4.18489 4.32323 4.37686 4.41551 4.52891 4.72860 4.78038 4.81964 4.83069 4.84589 4.85975 4.88450 4.89357 4.92313 5.05915 5.20226 5.31198 5.44588 5.57851 5.66008 5.67842 5.69906 5.91727 6.33472 6.59172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.383 4.383 3 C -0.075 4.075 4 C -0.084 4.084 5 C -0.202 4.202 6 C 0.125 3.875 7 O -0.330 6.330 8 C 0.017 3.983 9 C -0.157 4.157 10 C -0.084 4.084 11 O -0.551 6.551 12 Si 1.026 2.974 13 H -0.242 1.242 14 H -0.262 1.262 15 H -0.267 1.267 16 C -0.106 4.106 17 Si 1.099 2.901 18 C -0.460 4.460 19 C -0.459 4.459 20 C -0.461 4.461 21 H 0.126 0.874 22 H 0.084 0.916 23 H 0.154 0.846 24 H 0.155 0.845 25 H 0.066 0.934 26 H 0.117 0.883 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.377 0.623 30 H 0.130 0.870 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 -2.695 1.102 4.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.422 4.422 3 C -0.076 4.076 4 C -0.101 4.101 5 C -0.221 4.221 6 C 0.080 3.920 7 O -0.243 6.243 8 C -0.077 4.077 9 C -0.158 4.158 10 C -0.192 4.192 11 O -0.358 6.358 12 Si 0.847 3.153 13 H -0.165 1.165 14 H -0.187 1.187 15 H -0.191 1.191 16 C -0.124 4.124 17 Si 1.287 2.713 18 C -0.567 4.567 19 C -0.567 4.567 20 C -0.568 4.568 21 H 0.144 0.856 22 H 0.102 0.898 23 H 0.171 0.829 24 H 0.173 0.827 25 H 0.085 0.915 26 H 0.135 0.865 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.225 0.775 30 H 0.148 0.852 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.114 -2.605 1.367 3.623 hybrid contribution 1.202 0.411 -0.252 1.296 sum 3.316 -2.194 1.115 4.130 Atomic orbital electron populations 1.24600 0.96116 1.02534 0.95528 1.28575 1.01508 1.08755 1.03336 1.19077 0.93578 0.93040 1.01866 1.21500 0.93152 0.98728 0.96748 1.21506 1.01606 0.91497 1.07462 1.18985 0.90869 0.85655 0.96506 1.86004 1.22165 1.27749 1.88406 1.23361 0.76261 1.05643 1.02400 1.19659 0.91660 0.96389 1.08140 1.25225 1.13206 0.92232 0.88563 1.86640 1.33794 1.82979 1.32420 0.84327 0.71831 0.79578 0.79538 1.16486 1.18704 1.19140 1.21315 1.00126 0.91713 0.99207 0.77615 0.65307 0.61634 0.66708 1.26310 1.09954 1.04984 1.15451 1.26237 1.11663 1.14059 1.04762 1.26330 1.09983 1.04958 1.15542 0.85603 0.89781 0.82915 0.82705 0.91503 0.86510 0.91631 0.89987 0.77450 0.85216 0.91299 0.90291 0.91019 0.90956 0.90393 0.90855 0.91068 0.90289 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.13 13.39 66.66 0.89 0.76 16 2 C -0.38 -0.44 4.70 23.64 0.11 -0.33 16 3 C -0.08 -0.34 5.84 -20.11 -0.12 -0.46 16 4 C -0.08 -0.14 8.70 22.50 0.20 0.06 16 5 C -0.20 -0.31 9.02 22.33 0.20 -0.11 16 6 C 0.13 0.59 6.62 22.57 0.15 0.74 16 7 O -0.33 -0.82 9.37 -92.03 -0.86 -1.68 16 8 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 9 C -0.16 -1.07 5.28 -19.81 -0.10 -1.17 16 10 C -0.08 -0.49 2.33 71.24 0.17 -0.32 16 11 O -0.55 -4.01 12.65 -148.98 -1.89 -5.89 16 12 Si 1.03 5.18 25.73 68.60 1.77 6.94 16 13 H -0.24 -0.89 7.11 99.48 0.71 -0.18 16 14 H -0.26 -1.67 6.74 99.48 0.67 -1.00 16 15 H -0.27 -1.77 7.11 99.48 0.71 -1.06 16 16 C -0.11 -0.73 8.00 22.50 0.18 -0.55 16 17 Si 1.10 -4.99 10.79 68.60 0.74 -4.25 16 18 C -0.46 1.69 8.65 113.37 0.98 2.67 16 19 C -0.46 1.87 7.86 113.37 0.89 2.76 16 20 C -0.46 1.52 8.65 113.37 0.98 2.50 16 21 H 0.13 -0.42 7.05 -2.91 -0.02 -0.44 16 22 H 0.08 0.18 6.03 -2.91 -0.02 0.16 16 23 H 0.15 -0.52 3.69 -2.91 -0.01 -0.53 16 24 H 0.16 -0.61 6.28 -2.91 -0.02 -0.63 16 25 H 0.07 -0.44 7.66 -2.38 -0.02 -0.45 16 26 H 0.12 -0.91 8.14 -2.39 -0.02 -0.93 16 27 H 0.07 -0.41 7.65 -2.39 -0.02 -0.43 16 28 H 0.08 0.32 7.82 -2.39 -0.02 0.30 16 29 H 0.38 1.03 8.59 -74.05 -0.64 0.40 16 30 H 0.13 0.75 2.98 -2.91 -0.01 0.74 16 31 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 32 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 33 H 0.07 -0.27 6.57 -2.39 -0.02 -0.29 16 34 H 0.07 -0.29 7.96 -2.39 -0.02 -0.30 16 35 H 0.08 -0.36 7.96 -2.39 -0.02 -0.38 16 36 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 37 H 0.07 -0.24 6.57 -2.39 -0.02 -0.26 16 38 H 0.08 -0.36 7.96 -2.39 -0.02 -0.38 16 39 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 Total: 0.00 -10.60 313.13 6.53 -4.07 By element: Atomic # 1 Polarization: -7.90 SS G_CDS: 1.13 Total: -6.77 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 5.64 Total: 7.58 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -2.75 Total: -7.57 kcal Atomic # 14 Polarization: 0.19 SS G_CDS: 2.51 Total: 2.69 kcal Total: -10.60 6.53 -4.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12398912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.076 kcal (2) G-P(sol) polarization free energy of solvation -10.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds