Wall clock time and date at job start Mon Mar 8 2021 07:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32612 * 1 3 3 C 1.47738 * 119.99898 * 2 1 4 4 C 1.39819 * 120.14660 * 64.53212 * 3 2 1 5 5 O 1.35928 * 120.14790 * 0.02562 * 4 3 2 6 6 C 1.42897 * 116.99976 * 95.60274 * 5 4 3 7 7 C 1.39003 * 119.70669 * 179.74792 * 4 3 2 8 8 O 1.35998 * 120.00549 * 180.25445 * 7 4 3 9 9 C 1.42897 * 117.00184 * 180.29873 * 8 7 4 10 10 C 1.38587 * 119.98943 * 0.55573 * 7 4 3 11 11 C 1.38402 * 120.28959 * 359.69466 * 10 7 4 12 12 C 1.50706 * 119.84837 * 180.02562 * 11 10 7 13 13 O 1.42899 * 109.47282 * 120.02859 * 12 11 10 14 14 Si 1.86289 * 109.47051 * 0.02562 * 12 11 10 15 15 H 1.48496 * 109.47498 * 59.99776 * 14 12 11 16 16 H 1.48500 * 109.47178 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47373 * 299.99715 * 14 12 11 18 18 C 1.37919 * 120.30522 * 0.02757 * 11 10 7 19 19 Si 1.86797 * 119.99981 * 180.28324 * 2 1 3 20 20 C 1.86296 * 109.47374 * 359.97438 * 19 2 1 21 21 C 1.86296 * 109.47567 * 119.99472 * 19 2 1 22 22 C 1.86305 * 109.47001 * 239.99504 * 19 2 1 23 23 H 1.07996 * 120.00027 * 354.71472 * 1 2 3 24 24 H 1.08002 * 119.99751 * 174.73043 * 1 2 3 25 25 H 1.09008 * 109.46943 * 60.00692 * 6 5 4 26 26 H 1.09001 * 109.47250 * 180.02562 * 6 5 4 27 27 H 1.08998 * 109.47992 * 300.00599 * 6 5 4 28 28 H 1.09005 * 109.47179 * 59.99614 * 9 8 7 29 29 H 1.08998 * 109.47458 * 179.97438 * 9 8 7 30 30 H 1.09001 * 109.47437 * 300.00517 * 9 8 7 31 31 H 1.08002 * 119.85176 * 179.72499 * 10 7 4 32 32 H 1.09002 * 109.47131 * 240.02390 * 12 11 10 33 33 H 0.96708 * 113.99516 * 299.99785 * 13 12 11 34 34 H 1.07999 * 120.00613 * 180.02562 * 18 11 10 35 35 H 1.09003 * 109.47038 * 60.00586 * 20 19 2 36 36 H 1.08999 * 109.47425 * 180.02562 * 20 19 2 37 37 H 1.09002 * 109.47746 * 300.00698 * 20 19 2 38 38 H 1.09006 * 109.47103 * 59.99510 * 21 19 2 39 39 H 1.09000 * 109.47716 * 179.97438 * 21 19 2 40 40 H 1.08999 * 109.47074 * 300.00099 * 21 19 2 41 41 H 1.09004 * 109.46784 * 59.99727 * 22 19 2 42 42 H 1.08999 * 109.47314 * 179.97438 * 22 19 2 43 43 H 1.09001 * 109.47021 * 300.00312 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0648 1.2795 0.0000 4 6 1.9656 2.1475 1.0916 5 8 1.1896 1.8178 2.1577 6 6 1.8413 1.1955 3.2668 7 6 2.6687 3.3466 1.0842 8 8 2.5807 4.1931 2.1450 9 6 3.3248 5.4106 2.0670 10 6 3.4544 3.6822 -0.0069 11 6 3.5483 2.8252 -1.0896 12 6 4.4060 3.1998 -2.2707 13 8 5.4239 2.2134 -2.4522 14 14 5.1964 4.8584 -1.9629 15 1 6.0390 4.7864 -0.7422 16 1 6.0412 5.2279 -3.1269 17 1 4.1386 5.8836 -1.7743 18 6 2.8603 1.6298 -1.0926 19 14 2.2601 -1.6177 -0.0080 20 6 1.0495 -3.0337 -0.0142 21 6 3.3311 -1.7091 -1.5296 22 6 3.3313 -1.7238 1.5126 23 1 -0.5400 0.9313 0.0862 24 1 -0.5400 -0.9314 -0.0859 25 1 2.6087 1.8633 3.6586 26 1 1.1097 0.9851 4.0469 27 1 2.3027 0.2633 2.9410 28 1 2.9899 5.9864 1.2042 29 1 3.1664 5.9921 2.9751 30 1 4.3854 5.1821 1.9617 31 1 3.9962 4.6165 -0.0122 32 1 3.7875 3.2527 -3.1667 33 1 6.0133 2.1120 -1.6922 34 1 2.9374 0.9644 -1.9398 35 1 0.4226 -2.9719 -0.9037 36 1 1.5945 -3.9777 -0.0184 37 1 0.4231 -2.9802 0.8762 38 1 4.0394 -0.8805 -1.5257 39 1 3.8764 -2.6528 -1.5341 40 1 2.7044 -1.6470 -2.4193 41 1 2.7046 -1.6704 2.4029 42 1 3.8760 -2.6679 1.5082 43 1 4.0396 -0.8953 1.5166 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:11 Heat of formation + Delta-G solvation = -104.290779 kcal Electronic energy + Delta-G solvation = -23159.994705 eV Core-core repulsion = 19909.118262 eV Total energy + Delta-G solvation = -3250.876443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.60530 -39.17391 -38.86836 -37.06415 -34.60951 -31.56007 -30.58256 -29.56104 -28.63258 -28.46562 -28.29628 -27.96854 -25.82561 -23.91710 -22.68348 -20.40273 -19.00835 -18.44113 -17.92010 -17.33360 -17.02593 -16.30431 -16.13066 -16.07747 -15.65881 -15.55938 -15.41303 -14.65845 -14.39899 -14.13113 -14.04845 -13.99108 -13.73712 -13.53609 -13.30921 -13.25957 -13.09548 -13.05188 -12.87462 -12.76096 -12.53007 -12.27245 -12.07009 -11.96588 -11.77953 -11.25548 -11.09006 -10.88781 -10.73935 -10.46432 -10.15654 -9.36941 -9.08669 0.00637 0.33511 1.05462 1.12349 1.34266 1.42680 1.74245 1.83403 1.87053 2.08914 2.26577 2.42839 2.63545 2.99925 3.42993 3.55792 3.74559 4.01407 4.14072 4.16030 4.28074 4.40963 4.45143 4.47480 4.51324 4.55741 4.65430 4.68702 4.70337 4.73414 4.74167 4.80568 4.83223 4.84438 4.94874 5.03535 5.24231 5.37576 5.44810 5.48237 5.52021 5.61003 5.68341 5.85805 6.16442 6.49746 6.73393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.378 4.378 3 C -0.008 4.008 4 C 0.069 3.931 5 O -0.318 6.318 6 C 0.030 3.970 7 C 0.117 3.883 8 O -0.305 6.305 9 C 0.021 3.979 10 C -0.214 4.214 11 C -0.083 4.083 12 C -0.078 4.078 13 O -0.535 6.535 14 Si 0.943 3.057 15 H -0.251 1.251 16 H -0.250 1.250 17 H -0.251 1.251 18 C -0.115 4.115 19 Si 1.049 2.951 20 C -0.449 4.449 21 C -0.448 4.448 22 C -0.449 4.449 23 H 0.096 0.904 24 H 0.106 0.894 25 H 0.046 0.954 26 H 0.092 0.908 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.105 0.895 30 H 0.055 0.945 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.376 0.624 34 H 0.140 0.860 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.528 -0.573 0.670 1.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.419 4.419 3 C -0.008 4.008 4 C 0.024 3.976 5 O -0.234 6.234 6 C -0.064 4.064 7 C 0.071 3.929 8 O -0.218 6.218 9 C -0.074 4.074 10 C -0.232 4.232 11 C -0.083 4.083 12 C -0.189 4.189 13 O -0.340 6.340 14 Si 0.765 3.235 15 H -0.175 1.175 16 H -0.174 1.174 17 H -0.174 1.174 18 C -0.133 4.133 19 Si 1.240 2.760 20 C -0.557 4.557 21 C -0.556 4.556 22 C -0.556 4.556 23 H 0.114 0.886 24 H 0.124 0.876 25 H 0.064 0.936 26 H 0.111 0.889 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.123 0.877 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.223 0.777 34 H 0.158 0.842 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.288 0.263 0.458 1.392 hybrid contribution 0.296 0.117 0.523 0.612 sum 1.585 0.380 0.981 1.902 Atomic orbital electron populations 1.24311 0.95344 1.02053 0.92558 1.27743 1.00969 1.07071 1.06109 1.19089 0.95741 0.92963 0.93030 1.18095 0.97606 0.91441 0.90429 1.86066 1.33381 1.79146 1.24818 1.23090 0.98712 0.96674 0.87970 1.19301 0.95106 0.90997 0.87499 1.86179 1.67067 1.30076 1.38500 1.23163 0.95628 0.84597 1.04008 1.21002 1.05179 1.01946 0.95102 1.19998 0.98312 0.94917 0.95105 1.24957 0.92117 1.02585 0.99280 1.86530 1.43927 1.59737 1.43761 0.85786 0.80590 0.76000 0.81083 1.17504 1.17413 1.17448 1.20949 0.97033 0.96855 0.98466 0.78370 0.66293 0.63352 0.67975 1.26143 1.11343 1.13622 1.04617 1.26147 1.09808 1.04751 1.14890 1.26151 1.09749 1.04552 1.15134 0.88561 0.87559 0.93563 0.88927 0.93120 0.92499 0.87685 0.92630 0.85507 0.86026 0.77655 0.84222 0.90980 0.90840 0.91067 0.90627 0.91125 0.91051 0.91194 0.90882 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.05 13.23 28.83 0.38 0.33 16 2 C -0.38 -0.18 3.85 -37.60 -0.14 -0.32 16 3 C -0.01 -0.02 4.93 -104.91 -0.52 -0.53 16 4 C 0.07 0.24 5.70 -38.71 -0.22 0.02 16 5 O -0.32 -1.24 9.35 -34.11 -0.32 -1.56 16 6 C 0.03 0.04 11.13 101.05 1.12 1.16 16 7 C 0.12 0.39 6.69 -39.17 -0.26 0.12 16 8 O -0.31 -0.98 10.28 -34.33 -0.35 -1.33 16 9 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 10 C -0.21 -0.36 7.66 -39.39 -0.30 -0.67 16 11 C -0.08 -0.09 5.39 -104.68 -0.56 -0.65 16 12 C -0.08 0.03 2.81 36.01 0.10 0.13 16 13 O -0.53 0.06 12.76 -35.23 -0.45 -0.39 16 14 Si 0.94 -0.43 25.05 -169.99 -4.26 -4.69 16 15 H -0.25 0.13 7.11 56.52 0.40 0.53 16 16 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 17 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 18 C -0.11 -0.15 8.70 -39.18 -0.34 -0.49 16 19 Si 1.05 -1.84 12.31 -169.99 -2.09 -3.93 16 20 C -0.45 0.70 7.88 101.05 0.80 1.49 16 21 C -0.45 0.50 8.13 101.05 0.82 1.32 16 22 C -0.45 0.46 8.05 101.05 0.81 1.28 16 23 H 0.10 0.16 8.05 -52.49 -0.42 -0.26 16 24 H 0.11 -0.15 7.07 -52.49 -0.37 -0.52 16 25 H 0.05 0.06 8.14 -51.92 -0.42 -0.36 16 26 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 27 H 0.05 0.01 6.37 -51.93 -0.33 -0.32 16 28 H 0.06 -0.06 7.66 -51.93 -0.40 -0.46 16 29 H 0.10 -0.23 8.14 -51.93 -0.42 -0.65 16 30 H 0.06 -0.08 7.66 -51.93 -0.40 -0.48 16 31 H 0.13 0.04 3.07 -52.49 -0.16 -0.12 16 32 H 0.12 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.38 -1.21 8.70 45.56 0.40 -0.82 16 34 H 0.14 0.04 6.92 -52.49 -0.36 -0.32 16 35 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 36 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 38 H 0.07 -0.06 7.14 -51.93 -0.37 -0.43 16 39 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 40 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 41 H 0.07 -0.07 6.89 -51.93 -0.36 -0.43 16 42 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 43 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 LS Contribution 352.67 15.07 5.31 5.31 Total: 0.00 -5.42 352.67 -5.63 -11.04 By element: Atomic # 1 Polarization: -2.49 SS G_CDS: -6.15 Total: -8.64 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 2.68 Total: 4.18 kcal Atomic # 8 Polarization: -2.15 SS G_CDS: -1.12 Total: -3.27 kcal Atomic # 14 Polarization: -2.27 SS G_CDS: -6.35 Total: -8.62 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -5.42 -5.63 -11.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.249 kcal (2) G-P(sol) polarization free energy of solvation -5.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds