Wall clock time and date at job start Mon Mar 8 2021 07:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32612 * 1 3 3 C 1.47738 * 119.99898 * 2 1 4 4 C 1.39819 * 120.14660 * 64.53212 * 3 2 1 5 5 O 1.35928 * 120.14790 * 0.02562 * 4 3 2 6 6 C 1.42897 * 116.99976 * 95.60274 * 5 4 3 7 7 C 1.39003 * 119.70669 * 179.74792 * 4 3 2 8 8 O 1.35998 * 120.00549 * 180.25445 * 7 4 3 9 9 C 1.42897 * 117.00184 * 180.29873 * 8 7 4 10 10 C 1.38587 * 119.98943 * 0.55573 * 7 4 3 11 11 C 1.38402 * 120.28959 * 359.69466 * 10 7 4 12 12 C 1.50706 * 119.84837 * 180.02562 * 11 10 7 13 13 O 1.42899 * 109.47282 * 120.02859 * 12 11 10 14 14 Si 1.86289 * 109.47051 * 0.02562 * 12 11 10 15 15 H 1.48496 * 109.47498 * 59.99776 * 14 12 11 16 16 H 1.48500 * 109.47178 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47373 * 299.99715 * 14 12 11 18 18 C 1.37919 * 120.30522 * 0.02757 * 11 10 7 19 19 Si 1.86797 * 119.99981 * 180.28324 * 2 1 3 20 20 C 1.86296 * 109.47374 * 359.97438 * 19 2 1 21 21 C 1.86296 * 109.47567 * 119.99472 * 19 2 1 22 22 C 1.86305 * 109.47001 * 239.99504 * 19 2 1 23 23 H 1.07996 * 120.00027 * 354.71472 * 1 2 3 24 24 H 1.08002 * 119.99751 * 174.73043 * 1 2 3 25 25 H 1.09008 * 109.46943 * 60.00692 * 6 5 4 26 26 H 1.09001 * 109.47250 * 180.02562 * 6 5 4 27 27 H 1.08998 * 109.47992 * 300.00599 * 6 5 4 28 28 H 1.09005 * 109.47179 * 59.99614 * 9 8 7 29 29 H 1.08998 * 109.47458 * 179.97438 * 9 8 7 30 30 H 1.09001 * 109.47437 * 300.00517 * 9 8 7 31 31 H 1.08002 * 119.85176 * 179.72499 * 10 7 4 32 32 H 1.09002 * 109.47131 * 240.02390 * 12 11 10 33 33 H 0.96708 * 113.99516 * 299.99785 * 13 12 11 34 34 H 1.07999 * 120.00613 * 180.02562 * 18 11 10 35 35 H 1.09003 * 109.47038 * 60.00586 * 20 19 2 36 36 H 1.08999 * 109.47425 * 180.02562 * 20 19 2 37 37 H 1.09002 * 109.47746 * 300.00698 * 20 19 2 38 38 H 1.09006 * 109.47103 * 59.99510 * 21 19 2 39 39 H 1.09000 * 109.47716 * 179.97438 * 21 19 2 40 40 H 1.08999 * 109.47074 * 300.00099 * 21 19 2 41 41 H 1.09004 * 109.46784 * 59.99727 * 22 19 2 42 42 H 1.08999 * 109.47314 * 179.97438 * 22 19 2 43 43 H 1.09001 * 109.47021 * 300.00312 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0648 1.2795 0.0000 4 6 1.9656 2.1475 1.0916 5 8 1.1896 1.8178 2.1577 6 6 1.8413 1.1955 3.2668 7 6 2.6687 3.3466 1.0842 8 8 2.5807 4.1931 2.1450 9 6 3.3248 5.4106 2.0670 10 6 3.4544 3.6822 -0.0069 11 6 3.5483 2.8252 -1.0896 12 6 4.4060 3.1998 -2.2707 13 8 5.4239 2.2134 -2.4522 14 14 5.1964 4.8584 -1.9629 15 1 6.0390 4.7864 -0.7422 16 1 6.0412 5.2279 -3.1269 17 1 4.1386 5.8836 -1.7743 18 6 2.8603 1.6298 -1.0926 19 14 2.2601 -1.6177 -0.0080 20 6 1.0495 -3.0337 -0.0142 21 6 3.3311 -1.7091 -1.5296 22 6 3.3313 -1.7238 1.5126 23 1 -0.5400 0.9313 0.0862 24 1 -0.5400 -0.9314 -0.0859 25 1 2.6087 1.8633 3.6586 26 1 1.1097 0.9851 4.0469 27 1 2.3027 0.2633 2.9410 28 1 2.9899 5.9864 1.2042 29 1 3.1664 5.9921 2.9751 30 1 4.3854 5.1821 1.9617 31 1 3.9962 4.6165 -0.0122 32 1 3.7875 3.2527 -3.1667 33 1 6.0133 2.1120 -1.6922 34 1 2.9374 0.9644 -1.9398 35 1 0.4226 -2.9719 -0.9037 36 1 1.5945 -3.9777 -0.0184 37 1 0.4231 -2.9802 0.8762 38 1 4.0394 -0.8805 -1.5257 39 1 3.8764 -2.6528 -1.5341 40 1 2.7044 -1.6470 -2.4193 41 1 2.7046 -1.6704 2.4029 42 1 3.8760 -2.6679 1.5082 43 1 4.0396 -0.8953 1.5166 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:42:11 Heat of formation + Delta-G solvation = -97.242480 kcal Electronic energy + Delta-G solvation = -23159.689068 eV Core-core repulsion = 19909.118262 eV Total energy + Delta-G solvation = -3250.570806 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.71175 -39.28786 -38.94229 -37.09901 -34.64451 -31.63506 -30.63938 -29.44970 -28.58391 -28.44800 -28.18880 -27.98087 -25.87499 -23.98293 -22.77561 -20.45282 -19.09124 -18.51437 -18.01767 -17.36776 -17.12586 -16.35255 -16.16355 -16.09136 -15.72869 -15.59636 -15.44777 -14.66125 -14.43846 -14.04435 -14.01579 -13.86507 -13.67263 -13.49890 -13.32695 -13.15332 -13.01178 -12.96391 -12.82674 -12.76624 -12.56173 -12.26376 -12.11081 -12.01147 -11.78788 -11.22575 -11.12667 -10.80325 -10.75250 -10.45098 -10.15510 -9.45566 -9.21326 -0.09523 0.21497 1.07205 1.14037 1.37380 1.44393 1.81772 1.84579 2.01960 2.13818 2.27144 2.37607 2.70215 2.88190 3.47637 3.54386 3.69465 4.01129 4.15776 4.21189 4.22358 4.36062 4.41206 4.42859 4.47794 4.59571 4.66363 4.74296 4.82152 4.82518 4.83821 4.88130 4.91737 4.93043 4.93925 4.96772 5.16437 5.28896 5.41654 5.56973 5.59600 5.67988 5.72330 5.84864 6.07815 6.59802 6.68173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.390 4.390 3 C -0.013 4.013 4 C 0.046 3.954 5 O -0.336 6.336 6 C 0.025 3.975 7 C 0.101 3.899 8 O -0.326 6.326 9 C 0.012 3.988 10 C -0.218 4.218 11 C -0.081 4.081 12 C -0.075 4.075 13 O -0.545 6.545 14 Si 0.967 3.033 15 H -0.249 1.249 16 H -0.267 1.267 17 H -0.259 1.259 18 C -0.120 4.120 19 Si 1.101 2.899 20 C -0.457 4.457 21 C -0.458 4.458 22 C -0.461 4.461 23 H 0.077 0.923 24 H 0.126 0.874 25 H 0.041 0.959 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.121 0.879 30 H 0.065 0.935 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.389 0.611 34 H 0.150 0.850 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.928 -1.213 0.336 2.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.428 4.428 3 C -0.013 4.013 4 C 0.002 3.998 5 O -0.252 6.252 6 C -0.068 4.068 7 C 0.055 3.945 8 O -0.240 6.240 9 C -0.082 4.082 10 C -0.237 4.237 11 C -0.081 4.081 12 C -0.186 4.186 13 O -0.352 6.352 14 Si 0.791 3.209 15 H -0.172 1.172 16 H -0.192 1.192 17 H -0.183 1.183 18 C -0.138 4.138 19 Si 1.289 2.711 20 C -0.565 4.565 21 C -0.565 4.565 22 C -0.567 4.567 23 H 0.096 0.904 24 H 0.144 0.856 25 H 0.059 0.941 26 H 0.124 0.876 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.139 0.861 30 H 0.084 0.916 31 H 0.156 0.844 32 H 0.148 0.852 33 H 0.238 0.762 34 H 0.168 0.832 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.694 -0.360 0.139 1.738 hybrid contribution 0.191 0.353 0.640 0.756 sum 1.885 -0.007 0.779 2.040 Atomic orbital electron populations 1.24398 0.95468 1.02157 0.92921 1.28264 1.01212 1.07622 1.05726 1.19321 0.95809 0.93410 0.92771 1.18379 0.98372 0.92167 0.90918 1.86024 1.34274 1.79508 1.25436 1.23222 0.99040 0.96795 0.87778 1.19510 0.95705 0.91219 0.88068 1.86142 1.67890 1.31117 1.38850 1.23408 0.95973 0.83695 1.05137 1.21149 1.05086 1.02539 0.94891 1.20187 0.98059 0.94621 0.95276 1.24983 0.92054 1.02542 0.99033 1.86502 1.44145 1.59726 1.44779 0.85444 0.79781 0.75394 0.80283 1.17247 1.19189 1.18290 1.21120 0.96913 0.97194 0.98536 0.77607 0.65116 0.61546 0.66833 1.26208 1.11548 1.13805 1.04894 1.26251 1.10012 1.04837 1.15384 1.26295 1.09998 1.04612 1.15822 0.90420 0.85574 0.94066 0.87623 0.92201 0.92020 0.86090 0.91620 0.84412 0.85163 0.76175 0.83221 0.90615 0.90421 0.90931 0.91003 0.90687 0.90929 0.91207 0.90280 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.17 13.23 66.66 0.88 0.71 16 2 C -0.39 -0.53 3.85 23.62 0.09 -0.44 16 3 C -0.01 -0.06 4.93 -20.05 -0.10 -0.16 16 4 C 0.05 0.39 5.70 22.84 0.13 0.52 16 5 O -0.34 -3.13 9.35 -78.79 -0.74 -3.87 16 6 C 0.03 0.09 11.13 113.37 1.26 1.35 16 7 C 0.10 0.79 6.69 22.54 0.15 0.94 16 8 O -0.33 -2.50 10.28 -79.57 -0.82 -3.31 16 9 C 0.01 0.00 9.81 113.37 1.11 1.11 16 10 C -0.22 -0.87 7.66 22.39 0.17 -0.69 16 11 C -0.08 -0.18 5.39 -19.90 -0.11 -0.29 16 12 C -0.08 0.08 2.81 71.24 0.20 0.28 16 13 O -0.54 0.43 12.76 -148.98 -1.90 -1.47 16 14 Si 0.97 -1.05 25.05 68.60 1.72 0.67 16 15 H -0.25 0.39 7.11 99.48 0.71 1.10 16 16 H -0.27 -0.46 7.11 99.48 0.71 0.25 16 17 H -0.26 -0.05 7.11 99.48 0.71 0.66 16 18 C -0.12 -0.35 8.70 22.53 0.20 -0.16 16 19 Si 1.10 -4.31 12.31 68.60 0.84 -3.47 16 20 C -0.46 1.85 7.88 113.37 0.89 2.75 16 21 C -0.46 1.29 8.13 113.37 0.92 2.21 16 22 C -0.46 1.02 8.05 113.37 0.91 1.93 16 23 H 0.08 0.39 8.05 -2.91 -0.02 0.37 16 24 H 0.13 -0.39 7.07 -2.91 -0.02 -0.41 16 25 H 0.04 0.17 8.14 -2.38 -0.02 0.15 16 26 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 27 H 0.06 0.07 6.37 -2.39 -0.02 0.05 16 28 H 0.06 -0.10 7.66 -2.38 -0.02 -0.12 16 29 H 0.12 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H 0.07 -0.18 7.66 -2.39 -0.02 -0.20 16 31 H 0.14 0.10 3.07 -2.91 -0.01 0.10 16 32 H 0.13 -0.38 7.96 -2.39 -0.02 -0.40 16 33 H 0.39 -2.71 8.70 -74.05 -0.64 -3.36 16 34 H 0.15 0.06 6.92 -2.91 -0.02 0.04 16 35 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 36 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 37 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 38 H 0.07 -0.13 7.14 -2.38 -0.02 -0.15 16 39 H 0.07 -0.27 7.96 -2.39 -0.02 -0.28 16 40 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 41 H 0.07 -0.15 6.89 -2.38 -0.02 -0.17 16 42 H 0.08 -0.27 7.96 -2.39 -0.02 -0.29 16 43 H 0.06 -0.05 7.96 -2.39 -0.02 -0.07 16 Total: 0.00 -12.86 352.67 6.93 -5.93 By element: Atomic # 1 Polarization: -5.65 SS G_CDS: 1.11 Total: -4.54 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 6.72 Total: 10.05 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -3.46 Total: -8.65 kcal Atomic # 14 Polarization: -5.36 SS G_CDS: 2.56 Total: -2.79 kcal Total: -12.86 6.93 -5.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.312 kcal (2) G-P(sol) polarization free energy of solvation -12.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds