Wall clock time and date at job start Mon Mar 8 2021 07:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32612 * 1 3 3 C 1.47738 * 119.99898 * 2 1 4 4 C 1.39819 * 120.14660 * 64.53212 * 3 2 1 5 5 O 1.35928 * 120.14790 * 0.02562 * 4 3 2 6 6 C 1.42897 * 116.99976 * 95.60274 * 5 4 3 7 7 C 1.39003 * 119.70669 * 179.74792 * 4 3 2 8 8 O 1.35998 * 120.00549 * 180.25445 * 7 4 3 9 9 C 1.42897 * 117.00184 * 180.29873 * 8 7 4 10 10 C 1.53002 * 109.47845 * 179.97438 * 9 8 7 11 11 C 1.38587 * 119.98943 * 0.55573 * 7 4 3 12 12 C 1.38402 * 120.28959 * 359.69466 * 11 7 4 13 13 C 1.50706 * 119.84837 * 180.02562 * 12 11 7 14 14 O 1.42899 * 109.47282 * 120.02859 * 13 12 11 15 15 Si 1.86289 * 109.47051 * 0.02562 * 13 12 11 16 16 H 1.48496 * 109.47498 * 59.99776 * 15 13 12 17 17 H 1.48500 * 109.47178 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47373 * 299.99715 * 15 13 12 19 19 C 1.37919 * 120.30522 * 0.02757 * 12 11 7 20 20 Si 1.86797 * 119.99981 * 180.28324 * 2 1 3 21 21 C 1.86296 * 109.47374 * 359.97438 * 20 2 1 22 22 C 1.86296 * 109.47567 * 119.99472 * 20 2 1 23 23 C 1.86305 * 109.47001 * 239.99504 * 20 2 1 24 24 H 1.07996 * 120.00027 * 354.71472 * 1 2 3 25 25 H 1.08002 * 119.99751 * 174.73043 * 1 2 3 26 26 H 1.08998 * 109.47992 * 300.00599 * 6 5 4 27 27 H 1.09008 * 109.46943 * 60.00692 * 6 5 4 28 28 H 1.09001 * 109.47250 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47437 * 300.00517 * 9 8 7 30 30 H 1.09005 * 109.47179 * 59.99614 * 9 8 7 31 31 H 1.08995 * 109.47495 * 180.02562 * 10 9 8 32 32 H 1.09008 * 109.46867 * 300.00503 * 10 9 8 33 33 H 1.09005 * 109.47012 * 59.99555 * 10 9 8 34 34 H 1.08002 * 119.85176 * 179.72499 * 11 7 4 35 35 H 1.09002 * 109.47131 * 240.02390 * 13 12 11 36 36 H 0.96708 * 113.99516 * 299.99785 * 14 13 12 37 37 H 1.07999 * 120.00613 * 180.02562 * 19 12 11 38 38 H 1.09003 * 109.47038 * 60.00586 * 21 20 2 39 39 H 1.08999 * 109.47425 * 180.02562 * 21 20 2 40 40 H 1.09002 * 109.47746 * 300.00698 * 21 20 2 41 41 H 1.09006 * 109.47103 * 59.99510 * 22 20 2 42 42 H 1.09000 * 109.47716 * 179.97438 * 22 20 2 43 43 H 1.08999 * 109.47074 * 300.00099 * 22 20 2 44 44 H 1.09004 * 109.46784 * 59.99727 * 23 20 2 45 45 H 1.08999 * 109.47314 * 179.97438 * 23 20 2 46 46 H 1.09001 * 109.47021 * 300.00312 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0648 1.2795 0.0000 4 6 1.9656 2.1475 1.0916 5 8 1.1896 1.8178 2.1577 6 6 1.8413 1.1955 3.2668 7 6 2.6687 3.3466 1.0842 8 8 2.5807 4.1931 2.1450 9 6 3.3248 5.4106 2.0670 10 6 3.1025 6.2269 3.3417 11 6 3.4544 3.6822 -0.0069 12 6 3.5483 2.8252 -1.0896 13 6 4.4060 3.1998 -2.2707 14 8 5.4239 2.2134 -2.4522 15 14 5.1964 4.8584 -1.9629 16 1 6.0390 4.7864 -0.7422 17 1 6.0412 5.2279 -3.1269 18 1 4.1386 5.8836 -1.7743 19 6 2.8603 1.6298 -1.0926 20 14 2.2601 -1.6177 -0.0080 21 6 1.0495 -3.0337 -0.0142 22 6 3.3311 -1.7091 -1.5296 23 6 3.3313 -1.7238 1.5126 24 1 -0.5400 0.9313 0.0862 25 1 -0.5400 -0.9314 -0.0859 26 1 2.3027 0.2633 2.9410 27 1 2.6087 1.8633 3.6586 28 1 1.1097 0.9851 4.0469 29 1 4.3854 5.1821 1.9617 30 1 2.9899 5.9864 1.2042 31 1 3.6697 7.1558 3.2820 32 1 2.0418 6.4554 3.4465 33 1 3.4371 5.6513 4.2048 34 1 3.9962 4.6165 -0.0122 35 1 3.7875 3.2527 -3.1667 36 1 6.0133 2.1120 -1.6922 37 1 2.9374 0.9644 -1.9398 38 1 0.4226 -2.9719 -0.9037 39 1 1.5945 -3.9777 -0.0184 40 1 0.4231 -2.9802 0.8762 41 1 4.0394 -0.8805 -1.5257 42 1 3.8764 -2.6528 -1.5341 43 1 2.7044 -1.6470 -2.4193 44 1 2.7046 -1.6704 2.4029 45 1 3.8760 -2.6679 1.5082 46 1 4.0396 -0.8953 1.5166 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:44:54 Heat of formation + Delta-G solvation = -101.968351 kcal Electronic energy + Delta-G solvation = -25059.104208 eV Core-core repulsion = 21652.790854 eV Total energy + Delta-G solvation = -3406.313354 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73903 -39.42133 -38.94967 -37.11334 -34.70165 -32.92067 -31.10264 -30.49414 -29.44029 -28.55227 -28.19825 -27.98570 -26.19315 -25.05123 -23.23102 -22.79552 -20.42067 -19.10593 -18.49771 -18.01259 -17.39823 -17.33385 -16.50532 -16.25190 -16.09560 -15.75877 -15.54682 -15.29693 -14.68342 -14.42341 -14.11224 -14.04780 -13.96927 -13.86987 -13.67487 -13.52023 -13.48553 -13.14844 -13.01757 -12.96960 -12.94060 -12.67752 -12.58351 -12.53580 -12.26511 -11.99299 -11.82385 -11.77590 -11.22503 -11.12742 -10.80299 -10.75506 -10.45505 -10.15834 -9.45961 -9.21018 -0.09933 0.21345 1.06634 1.13463 1.36574 1.43753 1.81036 1.83844 2.00445 2.06983 2.23367 2.37033 2.69654 2.87828 3.46670 3.53403 3.67759 3.89965 3.94747 4.06399 4.18974 4.22745 4.28946 4.40353 4.42166 4.47088 4.65259 4.71576 4.75484 4.81618 4.81869 4.82143 4.83556 4.87753 4.91257 4.91962 4.93305 4.96320 5.13461 5.16068 5.29286 5.41771 5.56499 5.59479 5.67632 5.71847 5.84548 6.09816 6.59872 6.67712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.389 4.389 3 C -0.012 4.012 4 C 0.046 3.954 5 O -0.335 6.335 6 C 0.026 3.974 7 C 0.104 3.896 8 O -0.323 6.323 9 C 0.040 3.960 10 C -0.149 4.149 11 C -0.219 4.219 12 C -0.080 4.080 13 C -0.075 4.075 14 O -0.544 6.544 15 Si 0.965 3.035 16 H -0.249 1.249 17 H -0.266 1.266 18 H -0.259 1.259 19 C -0.120 4.120 20 Si 1.100 2.900 21 C -0.456 4.456 22 C -0.458 4.458 23 C -0.461 4.461 24 H 0.077 0.923 25 H 0.126 0.874 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.389 0.611 37 H 0.150 0.850 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.976 -0.987 0.499 2.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.428 4.428 3 C -0.013 4.013 4 C 0.002 3.998 5 O -0.252 6.252 6 C -0.068 4.068 7 C 0.058 3.942 8 O -0.237 6.237 9 C -0.035 4.035 10 C -0.206 4.206 11 C -0.238 4.238 12 C -0.081 4.081 13 C -0.186 4.186 14 O -0.351 6.351 15 Si 0.789 3.211 16 H -0.173 1.173 17 H -0.191 1.191 18 H -0.183 1.183 19 C -0.138 4.138 20 Si 1.288 2.712 21 C -0.564 4.564 22 C -0.565 4.565 23 C -0.567 4.567 24 H 0.096 0.904 25 H 0.144 0.856 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.124 0.876 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.238 0.762 37 H 0.168 0.832 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.742 -0.129 0.307 1.774 hybrid contribution 0.153 0.272 0.615 0.690 sum 1.895 0.143 0.923 2.113 Atomic orbital electron populations 1.24398 0.95460 1.02160 0.92901 1.28255 1.01209 1.07593 1.05742 1.19319 0.95786 0.93394 0.92754 1.18369 0.98394 0.92124 0.90923 1.86025 1.34243 1.79497 1.25419 1.23213 0.99010 0.96770 0.87793 1.19462 0.95650 0.91106 0.87980 1.86154 1.67824 1.30789 1.38948 1.23124 0.95838 0.83407 1.01133 1.21797 1.03460 0.99813 0.95514 1.21140 1.05169 1.02507 0.94966 1.20183 0.98039 0.94608 0.95243 1.24972 0.92052 1.02497 0.99038 1.86501 1.44135 1.59706 1.44771 0.85468 0.79821 0.75470 0.80317 1.17273 1.19073 1.18317 1.21117 0.96940 0.97187 0.98553 0.77629 0.65156 0.61597 0.66854 1.26204 1.11536 1.13782 1.04911 1.26250 1.10015 1.04843 1.15382 1.26294 1.09998 1.04615 1.15821 0.90419 0.85563 0.92202 0.94142 0.87648 0.91072 0.91511 0.88175 0.91947 0.91626 0.84584 0.85125 0.76179 0.83200 0.90596 0.90406 0.90917 0.90998 0.90681 0.90911 0.91206 0.90267 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.18 13.23 66.66 0.88 0.70 16 2 C -0.39 -0.58 3.85 23.62 0.09 -0.49 16 3 C -0.01 -0.06 4.93 -20.05 -0.10 -0.16 16 4 C 0.05 0.40 5.70 22.84 0.13 0.53 16 5 O -0.34 -3.19 9.35 -78.79 -0.74 -3.92 16 6 C 0.03 0.10 11.13 113.37 1.26 1.36 16 7 C 0.10 0.86 6.69 22.54 0.15 1.01 16 8 O -0.32 -2.69 9.92 -79.57 -0.79 -3.48 16 9 C 0.04 0.07 5.46 71.98 0.39 0.46 16 10 C -0.15 0.20 10.28 71.98 0.74 0.94 16 11 C -0.22 -0.97 7.66 22.39 0.17 -0.80 16 12 C -0.08 -0.20 5.39 -19.90 -0.11 -0.31 16 13 C -0.07 0.06 2.81 71.24 0.20 0.26 16 14 O -0.54 0.36 12.76 -148.98 -1.90 -1.54 16 15 Si 0.96 -0.76 25.05 68.60 1.72 0.96 16 16 H -0.25 0.30 7.11 99.48 0.71 1.01 16 17 H -0.27 -0.50 7.11 99.48 0.71 0.21 16 18 H -0.26 -0.14 7.11 99.48 0.71 0.57 16 19 C -0.12 -0.38 8.70 22.53 0.20 -0.18 16 20 Si 1.10 -4.13 12.31 68.60 0.84 -3.29 16 21 C -0.46 1.81 7.88 113.37 0.89 2.71 16 22 C -0.46 1.23 8.13 113.37 0.92 2.15 16 23 C -0.46 0.94 8.05 113.37 0.91 1.85 16 24 H 0.08 0.40 8.05 -2.91 -0.02 0.38 16 25 H 0.13 -0.38 7.07 -2.91 -0.02 -0.40 16 26 H 0.06 0.08 6.37 -2.39 -0.02 0.07 16 27 H 0.04 0.18 8.14 -2.38 -0.02 0.16 16 28 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.07 -0.06 7.66 -2.39 -0.02 -0.08 16 30 H 0.07 0.02 7.66 -2.38 -0.02 0.00 16 31 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H 0.06 0.01 8.14 -2.38 -0.02 -0.01 16 33 H 0.06 -0.06 8.14 -2.38 -0.02 -0.07 16 34 H 0.14 0.20 3.07 -2.91 -0.01 0.19 16 35 H 0.13 -0.36 7.96 -2.39 -0.02 -0.38 16 36 H 0.39 -2.65 8.70 -74.05 -0.64 -3.29 16 37 H 0.15 0.08 6.92 -2.91 -0.02 0.06 16 38 H 0.07 -0.34 7.96 -2.39 -0.02 -0.35 16 39 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 40 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 41 H 0.07 -0.12 7.14 -2.38 -0.02 -0.14 16 42 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 43 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 44 H 0.07 -0.14 6.89 -2.38 -0.02 -0.16 16 45 H 0.08 -0.26 7.96 -2.39 -0.02 -0.28 16 46 H 0.06 -0.04 7.96 -2.39 -0.02 -0.06 16 Total: 0.00 -12.48 374.53 6.94 -5.54 By element: Atomic # 1 Polarization: -5.37 SS G_CDS: 1.07 Total: -4.30 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 6.74 Total: 10.03 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -3.43 Total: -8.94 kcal Atomic # 14 Polarization: -4.89 SS G_CDS: 2.56 Total: -2.33 kcal Total: -12.48 6.94 -5.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.430 kcal (2) G-P(sol) polarization free energy of solvation -12.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds