Wall clock time and date at job start Mon Mar 8 2021 07:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32613 * 1 3 3 C 1.47739 * 120.00209 * 2 1 4 4 C 1.39824 * 120.14242 * 65.14806 * 3 2 1 5 5 O 1.35919 * 120.15305 * 359.95974 * 4 3 2 6 6 C 1.42905 * 117.00004 * 95.67178 * 5 4 3 7 7 C 1.53001 * 109.46974 * 180.02562 * 6 5 4 8 8 C 1.39010 * 119.69953 * 179.97438 * 4 3 2 9 9 O 1.36002 * 119.99954 * 180.02562 * 8 4 3 10 10 C 1.42901 * 116.99672 * 180.02562 * 9 8 4 11 11 C 1.38584 * 119.99016 * 359.75525 * 8 4 3 12 12 C 1.38409 * 120.29413 * 0.52571 * 11 8 4 13 13 C 1.50701 * 119.85040 * 179.72404 * 12 11 8 14 14 O 1.42894 * 109.46755 * 119.72368 * 13 12 11 15 15 Si 1.86306 * 109.47018 * 359.72535 * 13 12 11 16 16 H 1.48497 * 109.46897 * 300.00015 * 15 13 12 17 17 H 1.48501 * 109.47172 * 60.00150 * 15 13 12 18 18 H 1.48498 * 109.46700 * 180.02562 * 15 13 12 19 19 C 1.37918 * 120.29332 * 359.44616 * 12 11 8 20 20 Si 1.86799 * 119.99482 * 179.97438 * 2 1 3 21 21 C 1.86296 * 109.47143 * 275.19103 * 20 2 1 22 22 C 1.86298 * 109.47598 * 35.19638 * 20 2 1 23 23 C 1.86305 * 109.46980 * 155.19487 * 20 2 1 24 24 H 1.07996 * 119.99780 * 5.11374 * 1 2 3 25 25 H 1.08000 * 119.99954 * 185.11333 * 1 2 3 26 26 H 1.08998 * 109.47267 * 300.00651 * 6 5 4 27 27 H 1.09000 * 109.46689 * 60.00424 * 6 5 4 28 28 H 1.09000 * 109.47429 * 60.00432 * 7 6 5 29 29 H 1.08999 * 109.46958 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.47213 * 299.99694 * 7 6 5 31 31 H 1.08996 * 109.47245 * 60.00571 * 10 9 8 32 32 H 1.09001 * 109.47414 * 180.02562 * 10 9 8 33 33 H 1.09007 * 109.47330 * 300.00458 * 10 9 8 34 34 H 1.08003 * 119.85109 * 180.26485 * 11 8 4 35 35 H 1.08996 * 109.46899 * 239.72304 * 13 12 11 36 36 H 0.96703 * 113.99849 * 179.97438 * 14 13 12 37 37 H 1.08004 * 119.99131 * 180.27687 * 19 12 11 38 38 H 1.08997 * 109.46924 * 60.00426 * 21 20 2 39 39 H 1.09006 * 109.47408 * 180.02562 * 21 20 2 40 40 H 1.09001 * 109.47727 * 300.00395 * 21 20 2 41 41 H 1.08997 * 109.47104 * 59.99264 * 22 20 2 42 42 H 1.08996 * 109.47134 * 179.97438 * 22 20 2 43 43 H 1.09006 * 109.46758 * 299.99682 * 22 20 2 44 44 H 1.09002 * 109.47251 * 54.99714 * 23 20 2 45 45 H 1.08995 * 109.47653 * 175.00049 * 23 20 2 46 46 H 1.09001 * 109.47392 * 295.00296 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0649 1.2794 0.0000 4 6 1.9759 2.1416 1.0972 5 8 1.2088 1.8068 2.1681 6 6 1.8697 1.1793 3.2688 7 6 0.8518 0.8787 4.3708 8 6 2.6753 3.3429 1.0877 9 8 2.5935 4.1858 2.1518 10 6 3.3380 5.4031 2.0739 11 6 3.4602 3.6788 -0.0039 12 6 3.5435 2.8278 -1.0923 13 6 4.3952 3.2059 -2.2766 14 8 5.4121 2.2200 -2.4662 15 14 5.1874 4.8637 -1.9679 16 1 4.1306 5.8882 -1.7709 17 1 6.0363 4.7879 -0.7518 18 1 6.0261 5.2365 -3.1352 19 6 2.8551 1.6327 -1.0953 20 14 2.2600 -1.6178 0.0007 21 6 2.4328 -2.2343 1.7502 22 6 1.3274 -2.8737 -1.0111 23 6 3.9513 -1.3588 -0.7363 24 1 -0.5399 0.9316 -0.0834 25 1 -0.5400 -0.9316 0.0834 26 1 2.3283 0.2487 2.9346 27 1 2.6403 1.8451 3.6573 28 1 0.0814 0.2127 3.9821 29 1 1.3560 0.4005 5.2105 30 1 0.3929 1.8092 4.7052 31 1 2.9988 5.9821 1.2150 32 1 3.1856 5.9812 2.9853 33 1 4.3979 5.1743 1.9622 34 1 4.0061 4.6107 -0.0071 35 1 3.7722 3.2615 -3.1692 36 1 5.9990 2.3990 -3.2135 37 1 2.9272 0.9703 -1.9452 38 1 1.4433 -2.3858 2.1814 39 1 2.9781 -3.1781 1.7507 40 1 2.9785 -1.4995 2.3422 41 1 1.2263 -2.5130 -2.0346 42 1 1.8726 -3.8176 -1.0110 43 1 0.3379 -3.0253 -0.5798 44 1 4.4637 -0.5610 -0.1987 45 1 4.5280 -2.2802 -0.6552 46 1 3.8519 -1.0837 -1.7863 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:48:00 Heat of formation + Delta-G solvation = -107.238024 kcal Electronic energy + Delta-G solvation = -25181.880432 eV Core-core repulsion = 21775.338568 eV Total energy + Delta-G solvation = -3406.541864 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53438 -39.15030 -38.78896 -37.17682 -34.63846 -32.66989 -30.89892 -30.52326 -29.48413 -28.49332 -28.37590 -28.17168 -26.16403 -23.99789 -23.68549 -22.47210 -20.23829 -18.95733 -18.57154 -18.06832 -17.76525 -16.81846 -16.36157 -16.11647 -15.81145 -15.71129 -15.39432 -15.27029 -14.61769 -14.50890 -14.14948 -14.06912 -13.91051 -13.82729 -13.45844 -13.36525 -13.28833 -13.17699 -13.10685 -12.98569 -12.93760 -12.76223 -12.50422 -12.40299 -12.18739 -11.97119 -11.89025 -11.82319 -11.16336 -10.98553 -10.79865 -10.54745 -10.38518 -10.17872 -9.27285 -9.00002 0.06393 0.40541 1.06373 1.16548 1.35513 1.41613 1.78549 1.82623 1.92934 2.12674 2.32987 2.43855 2.66911 3.03303 3.32231 3.76016 3.81740 4.03549 4.19458 4.19907 4.22370 4.28336 4.37103 4.39010 4.48866 4.52501 4.55721 4.64510 4.73770 4.74937 4.78746 4.81012 4.87940 4.90641 4.92224 5.02150 5.06167 5.13267 5.28644 5.31585 5.42675 5.49509 5.55264 5.58242 5.68792 5.73984 5.90674 6.23916 6.53989 6.82971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.376 4.376 3 C -0.010 4.010 4 C 0.072 3.928 5 O -0.316 6.316 6 C 0.058 3.942 7 C -0.150 4.150 8 C 0.117 3.883 9 O -0.304 6.304 10 C 0.021 3.979 11 C -0.211 4.211 12 C -0.039 4.039 13 C -0.080 4.080 14 O -0.541 6.541 15 Si 0.938 3.062 16 H -0.250 1.250 17 H -0.247 1.247 18 H -0.253 1.253 19 C -0.108 4.108 20 Si 1.043 2.957 21 C -0.448 4.448 22 C -0.446 4.446 23 C -0.442 4.442 24 H 0.095 0.905 25 H 0.104 0.896 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.380 0.620 37 H 0.136 0.864 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 -0.186 -1.336 1.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.417 4.417 3 C -0.010 4.010 4 C 0.027 3.973 5 O -0.233 6.233 6 C -0.016 4.016 7 C -0.207 4.207 8 C 0.071 3.929 9 O -0.217 6.217 10 C -0.074 4.074 11 C -0.230 4.230 12 C -0.040 4.040 13 C -0.190 4.190 14 O -0.346 6.346 15 Si 0.761 3.239 16 H -0.174 1.174 17 H -0.171 1.171 18 H -0.178 1.178 19 C -0.127 4.127 20 Si 1.235 2.765 21 C -0.555 4.555 22 C -0.554 4.554 23 C -0.551 4.551 24 H 0.113 0.887 25 H 0.122 0.878 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.123 0.877 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.098 0.902 36 H 0.228 0.772 37 H 0.154 0.846 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.111 0.440 -0.427 1.269 hybrid contribution 0.417 0.323 -0.669 0.852 sum 1.529 0.763 -1.095 2.029 Atomic orbital electron populations 1.24200 0.95277 1.01757 0.92785 1.27719 1.00916 1.07047 1.06015 1.19038 0.95953 0.93017 0.93024 1.17982 0.97858 0.91288 0.90124 1.86069 1.33692 1.78804 1.24702 1.22792 0.95847 0.96469 0.86512 1.21738 0.99503 1.02596 0.96850 1.19231 0.95256 0.91064 0.87393 1.86181 1.67188 1.30225 1.38146 1.23160 0.95678 0.84638 1.03940 1.20924 1.05033 1.02273 0.94759 1.18909 0.96612 0.94854 0.93582 1.24683 0.92911 1.02770 0.98658 1.86517 1.44769 1.48469 1.54884 0.85866 0.80682 0.75687 0.81675 1.17382 1.17054 1.17751 1.20890 0.96994 0.96303 0.98486 0.78451 0.66658 0.63529 0.67862 1.26153 1.04650 1.06077 1.18591 1.26119 1.08403 1.11564 1.09323 1.26106 1.17039 1.04714 1.07194 0.88686 0.87806 0.92661 0.93021 0.91662 0.90798 0.91700 0.92539 0.87718 0.92626 0.85557 0.90186 0.77235 0.84614 0.91089 0.90989 0.91285 0.91005 0.90929 0.91204 0.90943 0.91305 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.08 13.26 28.83 0.38 0.31 16 2 C -0.38 -0.38 3.84 -37.60 -0.14 -0.52 16 3 C -0.01 -0.03 4.92 -104.91 -0.52 -0.54 16 4 C 0.07 0.31 5.70 -38.70 -0.22 0.09 16 5 O -0.32 -1.39 9.01 -34.08 -0.31 -1.70 16 6 C 0.06 0.13 6.78 37.16 0.25 0.38 16 7 C -0.15 -0.11 10.28 37.16 0.38 0.27 16 8 C 0.12 0.48 6.69 -39.17 -0.26 0.22 16 9 O -0.30 -1.17 10.28 -34.35 -0.35 -1.52 16 10 C 0.02 0.00 9.81 101.05 0.99 1.00 16 11 C -0.21 -0.61 7.66 -39.39 -0.30 -0.91 16 12 C -0.04 -0.09 5.42 -104.68 -0.57 -0.66 16 13 C -0.08 0.00 2.81 36.01 0.10 0.10 16 14 O -0.54 0.00 12.74 -35.23 -0.45 -0.45 16 15 Si 0.94 -0.19 25.06 -169.99 -4.26 -4.45 16 16 H -0.25 -0.07 7.11 56.52 0.40 0.33 16 17 H -0.25 -0.26 7.11 56.52 0.40 0.15 16 18 H -0.25 0.10 7.11 56.52 0.40 0.50 16 19 C -0.11 -0.25 8.16 -39.19 -0.32 -0.57 16 20 Si 1.04 -1.17 12.22 -169.99 -2.08 -3.25 16 21 C -0.45 0.25 8.57 101.05 0.87 1.12 16 22 C -0.45 0.49 8.65 101.05 0.87 1.37 16 23 C -0.44 0.01 7.71 101.05 0.78 0.79 16 24 H 0.09 0.16 8.05 -52.49 -0.42 -0.26 16 25 H 0.10 -0.13 7.60 -52.49 -0.40 -0.53 16 26 H 0.06 0.07 6.41 -51.93 -0.33 -0.26 16 27 H 0.05 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.06 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 30 H 0.06 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.06 -0.03 7.67 -51.93 -0.40 -0.43 16 32 H 0.10 -0.18 8.14 -51.93 -0.42 -0.60 16 33 H 0.06 -0.03 7.65 -51.93 -0.40 -0.43 16 34 H 0.13 0.18 3.07 -52.48 -0.16 0.02 16 35 H 0.08 -0.15 7.96 -51.93 -0.41 -0.56 16 36 H 0.38 -1.66 8.74 45.56 0.40 -1.27 16 37 H 0.14 0.13 7.40 -52.48 -0.39 -0.26 16 38 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 39 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 40 H 0.07 -0.01 6.34 -51.93 -0.33 -0.34 16 41 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 42 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 43 H 0.07 -0.09 7.83 -51.93 -0.41 -0.50 16 44 H 0.07 0.09 7.86 -51.93 -0.41 -0.32 16 45 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 46 H 0.07 -0.01 7.48 -51.93 -0.39 -0.39 16 LS Contribution 375.46 15.07 5.66 5.66 Total: 0.00 -5.80 375.46 -6.52 -12.32 By element: Atomic # 1 Polarization: -2.03 SS G_CDS: -7.02 Total: -9.05 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 2.30 Total: 2.45 kcal Atomic # 8 Polarization: -2.56 SS G_CDS: -1.11 Total: -3.67 kcal Atomic # 14 Polarization: -1.37 SS G_CDS: -6.34 Total: -7.70 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -5.80 -6.52 -12.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.919 kcal (2) G-P(sol) polarization free energy of solvation -5.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds