Wall clock time and date at job start Mon Mar 8 2021 07:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32613 * 1 3 3 C 1.47739 * 120.00209 * 2 1 4 4 C 1.39824 * 120.14242 * 65.14806 * 3 2 1 5 5 O 1.35919 * 120.15305 * 359.95974 * 4 3 2 6 6 C 1.42905 * 117.00004 * 95.67178 * 5 4 3 7 7 C 1.53001 * 109.46974 * 180.02562 * 6 5 4 8 8 C 1.39010 * 119.69953 * 179.97438 * 4 3 2 9 9 O 1.36002 * 119.99954 * 180.02562 * 8 4 3 10 10 C 1.42901 * 116.99672 * 180.02562 * 9 8 4 11 11 C 1.38584 * 119.99016 * 359.75525 * 8 4 3 12 12 C 1.38409 * 120.29413 * 0.52571 * 11 8 4 13 13 C 1.50701 * 119.85040 * 179.72404 * 12 11 8 14 14 O 1.42894 * 109.46755 * 119.72368 * 13 12 11 15 15 Si 1.86306 * 109.47018 * 359.72535 * 13 12 11 16 16 H 1.48497 * 109.46897 * 300.00015 * 15 13 12 17 17 H 1.48501 * 109.47172 * 60.00150 * 15 13 12 18 18 H 1.48498 * 109.46700 * 180.02562 * 15 13 12 19 19 C 1.37918 * 120.29332 * 359.44616 * 12 11 8 20 20 Si 1.86799 * 119.99482 * 179.97438 * 2 1 3 21 21 C 1.86296 * 109.47143 * 275.19103 * 20 2 1 22 22 C 1.86298 * 109.47598 * 35.19638 * 20 2 1 23 23 C 1.86305 * 109.46980 * 155.19487 * 20 2 1 24 24 H 1.07996 * 119.99780 * 5.11374 * 1 2 3 25 25 H 1.08000 * 119.99954 * 185.11333 * 1 2 3 26 26 H 1.08998 * 109.47267 * 300.00651 * 6 5 4 27 27 H 1.09000 * 109.46689 * 60.00424 * 6 5 4 28 28 H 1.09000 * 109.47429 * 60.00432 * 7 6 5 29 29 H 1.08999 * 109.46958 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.47213 * 299.99694 * 7 6 5 31 31 H 1.08996 * 109.47245 * 60.00571 * 10 9 8 32 32 H 1.09001 * 109.47414 * 180.02562 * 10 9 8 33 33 H 1.09007 * 109.47330 * 300.00458 * 10 9 8 34 34 H 1.08003 * 119.85109 * 180.26485 * 11 8 4 35 35 H 1.08996 * 109.46899 * 239.72304 * 13 12 11 36 36 H 0.96703 * 113.99849 * 179.97438 * 14 13 12 37 37 H 1.08004 * 119.99131 * 180.27687 * 19 12 11 38 38 H 1.08997 * 109.46924 * 60.00426 * 21 20 2 39 39 H 1.09006 * 109.47408 * 180.02562 * 21 20 2 40 40 H 1.09001 * 109.47727 * 300.00395 * 21 20 2 41 41 H 1.08997 * 109.47104 * 59.99264 * 22 20 2 42 42 H 1.08996 * 109.47134 * 179.97438 * 22 20 2 43 43 H 1.09006 * 109.46758 * 299.99682 * 22 20 2 44 44 H 1.09002 * 109.47251 * 54.99714 * 23 20 2 45 45 H 1.08995 * 109.47653 * 175.00049 * 23 20 2 46 46 H 1.09001 * 109.47392 * 295.00296 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0649 1.2794 0.0000 4 6 1.9759 2.1416 1.0972 5 8 1.2088 1.8068 2.1681 6 6 1.8697 1.1793 3.2688 7 6 0.8518 0.8787 4.3708 8 6 2.6753 3.3429 1.0877 9 8 2.5935 4.1858 2.1518 10 6 3.3380 5.4031 2.0739 11 6 3.4602 3.6788 -0.0039 12 6 3.5435 2.8278 -1.0923 13 6 4.3952 3.2059 -2.2766 14 8 5.4121 2.2200 -2.4662 15 14 5.1874 4.8637 -1.9679 16 1 4.1306 5.8882 -1.7709 17 1 6.0363 4.7879 -0.7518 18 1 6.0261 5.2365 -3.1352 19 6 2.8551 1.6327 -1.0953 20 14 2.2600 -1.6178 0.0007 21 6 2.4328 -2.2343 1.7502 22 6 1.3274 -2.8737 -1.0111 23 6 3.9513 -1.3588 -0.7363 24 1 -0.5399 0.9316 -0.0834 25 1 -0.5400 -0.9316 0.0834 26 1 2.3283 0.2487 2.9346 27 1 2.6403 1.8451 3.6573 28 1 0.0814 0.2127 3.9821 29 1 1.3560 0.4005 5.2105 30 1 0.3929 1.8092 4.7052 31 1 2.9988 5.9821 1.2150 32 1 3.1856 5.9812 2.9853 33 1 4.3979 5.1743 1.9622 34 1 4.0061 4.6107 -0.0071 35 1 3.7722 3.2615 -3.1692 36 1 5.9990 2.3990 -3.2135 37 1 2.9272 0.9703 -1.9452 38 1 1.4433 -2.3858 2.1814 39 1 2.9781 -3.1781 1.7507 40 1 2.9785 -1.4995 2.3422 41 1 1.2263 -2.5130 -2.0346 42 1 1.8726 -3.8176 -1.0110 43 1 0.3379 -3.0253 -0.5798 44 1 4.4637 -0.5610 -0.1987 45 1 4.5280 -2.2802 -0.6552 46 1 3.8519 -1.0837 -1.7863 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:48:00 Heat of formation + Delta-G solvation = -99.789682 kcal Electronic energy + Delta-G solvation = -25181.557448 eV Core-core repulsion = 21775.338568 eV Total energy + Delta-G solvation = -3406.218879 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 310.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70108 -39.33444 -38.89092 -37.21861 -34.71531 -32.79005 -31.02569 -30.63023 -29.41782 -28.53154 -28.31057 -28.12793 -26.24524 -24.10904 -23.82130 -22.62232 -20.33562 -19.12092 -18.56668 -18.20534 -17.89333 -16.97096 -16.44966 -16.21963 -15.91683 -15.75679 -15.53228 -15.34816 -14.65447 -14.54954 -14.14638 -14.03988 -13.85629 -13.78949 -13.51809 -13.37996 -13.25400 -13.16447 -13.10519 -13.00328 -12.91338 -12.79918 -12.59781 -12.48419 -12.25624 -12.07349 -11.92655 -11.88443 -11.13858 -11.05961 -10.75768 -10.68782 -10.35295 -10.21189 -9.40900 -9.19039 -0.09719 0.22289 1.06853 1.14000 1.37325 1.41646 1.81244 1.82873 2.02368 2.12811 2.27399 2.32648 2.69568 2.86291 3.32765 3.63498 3.81333 3.97784 4.06638 4.18724 4.19882 4.23871 4.24847 4.30569 4.36498 4.40904 4.57030 4.61160 4.81418 4.82310 4.84819 4.89050 4.89663 4.90097 4.90771 4.93454 4.97486 5.00905 5.19053 5.22047 5.28805 5.42779 5.58173 5.61783 5.67918 5.71517 5.86134 6.08367 6.62761 6.81391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.390 4.390 3 C -0.013 4.013 4 C 0.048 3.952 5 O -0.330 6.330 6 C 0.053 3.947 7 C -0.146 4.146 8 C 0.100 3.900 9 O -0.325 6.325 10 C 0.013 3.987 11 C -0.221 4.221 12 C -0.047 4.047 13 C -0.078 4.078 14 O -0.556 6.556 15 Si 0.961 3.039 16 H -0.259 1.259 17 H -0.269 1.269 18 H -0.245 1.245 19 C -0.115 4.115 20 Si 1.096 2.904 21 C -0.459 4.459 22 C -0.450 4.450 23 C -0.454 4.454 24 H 0.078 0.922 25 H 0.126 0.874 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.061 0.939 34 H 0.136 0.864 35 H 0.103 0.897 36 H 0.399 0.601 37 H 0.149 0.851 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.073 0.927 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.475 -1.037 -2.124 2.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.429 4.429 3 C -0.014 4.014 4 C 0.004 3.996 5 O -0.247 6.247 6 C -0.021 4.021 7 C -0.203 4.203 8 C 0.054 3.946 9 O -0.238 6.238 10 C -0.082 4.082 11 C -0.239 4.239 12 C -0.048 4.048 13 C -0.189 4.189 14 O -0.365 6.365 15 Si 0.786 3.214 16 H -0.184 1.184 17 H -0.194 1.194 18 H -0.169 1.169 19 C -0.133 4.133 20 Si 1.284 2.716 21 C -0.565 4.565 22 C -0.559 4.559 23 C -0.561 4.561 24 H 0.097 0.903 25 H 0.144 0.856 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.141 0.859 33 H 0.079 0.921 34 H 0.153 0.847 35 H 0.120 0.880 36 H 0.250 0.750 37 H 0.166 0.834 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.241 -0.384 -1.236 1.793 hybrid contribution 0.420 0.630 -0.408 0.860 sum 1.662 0.246 -1.644 2.351 Atomic orbital electron populations 1.24323 0.95286 1.02088 0.92677 1.28205 1.01251 1.07371 1.06061 1.19295 0.95906 0.93497 0.92668 1.18268 0.98697 0.91965 0.90681 1.86040 1.34380 1.79108 1.25176 1.22921 0.96182 0.96456 0.86525 1.21746 0.99309 1.02396 0.96835 1.19460 0.95836 0.91368 0.87914 1.86142 1.67965 1.31260 1.38465 1.23397 0.95771 0.83767 1.05220 1.21094 1.05124 1.02927 0.94793 1.19267 0.96653 0.94686 0.94159 1.24685 0.93082 1.02531 0.98559 1.86470 1.45184 1.48578 1.56228 0.85546 0.79843 0.75263 0.80797 1.18356 1.19412 1.16899 1.21101 0.96904 0.96602 0.98729 0.77693 0.65055 0.61849 0.67020 1.26276 1.04876 1.06273 1.19112 1.26143 1.08750 1.11603 1.09360 1.26258 1.18128 1.04394 1.07272 0.90319 0.85566 0.91890 0.93887 0.91393 0.89074 0.92455 0.91937 0.85912 0.92061 0.84698 0.87953 0.75031 0.83368 0.90728 0.90381 0.91968 0.90847 0.90446 0.90621 0.92430 0.90793 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.20 13.26 66.66 0.88 0.69 16 2 C -0.39 -0.96 3.84 23.62 0.09 -0.86 16 3 C -0.01 -0.09 4.92 -20.05 -0.10 -0.19 16 4 C 0.05 0.50 5.70 22.84 0.13 0.63 16 5 O -0.33 -3.52 9.01 -78.67 -0.71 -4.23 16 6 C 0.05 0.32 6.78 71.98 0.49 0.81 16 7 C -0.15 -0.31 10.28 71.98 0.74 0.43 16 8 C 0.10 1.03 6.69 22.54 0.15 1.18 16 9 O -0.32 -3.13 10.28 -79.62 -0.82 -3.95 16 10 C 0.01 0.02 9.81 113.37 1.11 1.13 16 11 C -0.22 -1.58 7.66 22.39 0.17 -1.41 16 12 C -0.05 -0.25 5.42 -19.90 -0.11 -0.36 16 13 C -0.08 0.02 2.81 71.24 0.20 0.22 16 14 O -0.56 0.29 12.74 -148.98 -1.90 -1.61 16 15 Si 0.96 -0.38 25.06 68.60 1.72 1.34 16 16 H -0.26 -0.25 7.11 99.48 0.71 0.46 16 17 H -0.27 -0.84 7.11 99.48 0.71 -0.13 16 18 H -0.25 0.43 7.11 99.48 0.71 1.14 16 19 C -0.12 -0.61 8.16 22.52 0.18 -0.43 16 20 Si 1.10 -2.86 12.22 68.60 0.84 -2.02 16 21 C -0.46 0.67 8.57 113.37 0.97 1.64 16 22 C -0.45 1.59 8.65 113.37 0.98 2.57 16 23 C -0.45 0.01 7.71 113.37 0.87 0.88 16 24 H 0.08 0.38 8.05 -2.91 -0.02 0.36 16 25 H 0.13 -0.41 7.60 -2.91 -0.02 -0.43 16 26 H 0.06 0.24 6.41 -2.39 -0.02 0.23 16 27 H 0.04 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.06 0.00 7.67 -2.39 -0.02 -0.02 16 32 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 33 H 0.06 0.01 7.65 -2.38 -0.02 -0.01 16 34 H 0.14 0.56 3.07 -2.91 -0.01 0.55 16 35 H 0.10 -0.50 7.96 -2.39 -0.02 -0.52 16 36 H 0.40 -3.88 8.74 -74.06 -0.65 -4.53 16 37 H 0.15 0.28 7.40 -2.91 -0.02 0.26 16 38 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 39 H 0.08 -0.20 7.96 -2.38 -0.02 -0.22 16 40 H 0.06 0.00 6.34 -2.39 -0.02 -0.01 16 41 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 42 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 43 H 0.07 -0.33 7.83 -2.38 -0.02 -0.35 16 44 H 0.06 0.18 7.86 -2.39 -0.02 0.17 16 45 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 46 H 0.07 -0.03 7.48 -2.39 -0.02 -0.05 16 Total: 0.00 -14.45 375.46 6.97 -7.49 By element: Atomic # 1 Polarization: -5.00 SS G_CDS: 1.06 Total: -3.94 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 6.77 Total: 6.92 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -3.42 Total: -9.80 kcal Atomic # 14 Polarization: -3.23 SS G_CDS: 2.56 Total: -0.68 kcal Total: -14.45 6.97 -7.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.303 kcal (2) G-P(sol) polarization free energy of solvation -14.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds