Wall clock time and date at job start Mon Mar 8 2021 07:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32607 * 1 3 3 C 1.47738 * 120.00054 * 2 1 4 4 C 1.39819 * 120.14648 * 64.52218 * 3 2 1 5 5 O 1.35928 * 120.14802 * 359.97438 * 4 3 2 6 6 C 1.42907 * 116.99807 * 95.61177 * 5 4 3 7 7 C 1.52998 * 109.46756 * 180.02562 * 6 5 4 8 8 C 1.39005 * 119.70907 * 179.79101 * 4 3 2 9 9 O 1.35999 * 120.01101 * 180.20612 * 8 4 3 10 10 C 1.42897 * 117.00557 * 180.25357 * 9 8 4 11 11 C 1.52991 * 109.47435 * 180.02562 * 10 9 8 12 12 C 1.38589 * 119.98571 * 0.45988 * 8 4 3 13 13 C 1.38404 * 120.29160 * 359.79591 * 12 8 4 14 14 C 1.50706 * 119.84864 * 179.97438 * 13 12 8 15 15 O 1.42906 * 109.47144 * 120.01675 * 14 13 12 16 16 Si 1.86299 * 109.46926 * 0.02562 * 14 13 12 17 17 H 1.48493 * 109.47215 * 60.00433 * 16 14 13 18 18 H 1.48500 * 109.46668 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.46985 * 299.99657 * 16 14 13 20 20 C 1.37919 * 120.30495 * 359.96964 * 13 12 8 21 21 Si 1.86797 * 119.99698 * 180.27450 * 2 1 3 22 22 C 1.86298 * 109.47248 * 0.02562 * 21 2 1 23 23 C 1.86304 * 109.47177 * 120.00205 * 21 2 1 24 24 C 1.86304 * 109.47043 * 240.00184 * 21 2 1 25 25 H 1.08003 * 119.99646 * 354.72740 * 1 2 3 26 26 H 1.07999 * 120.00431 * 174.71901 * 1 2 3 27 27 H 1.09000 * 109.47164 * 299.99814 * 6 5 4 28 28 H 1.08995 * 109.47071 * 60.00417 * 6 5 4 29 29 H 1.09004 * 109.47131 * 299.99493 * 7 6 5 30 30 H 1.08998 * 109.47991 * 60.00089 * 7 6 5 31 31 H 1.09003 * 109.46702 * 180.02562 * 7 6 5 32 32 H 1.09001 * 109.46918 * 300.00663 * 10 9 8 33 33 H 1.08999 * 109.46879 * 59.99557 * 10 9 8 34 34 H 1.09001 * 109.47345 * 300.00078 * 11 10 9 35 35 H 1.08993 * 109.47468 * 60.00145 * 11 10 9 36 36 H 1.09003 * 109.47379 * 180.02562 * 11 10 9 37 37 H 1.08002 * 119.85049 * 179.76231 * 12 8 4 38 38 H 1.08999 * 109.46626 * 240.01465 * 14 13 12 39 39 H 0.96696 * 113.99947 * 300.00225 * 15 14 13 40 40 H 1.07990 * 120.00340 * 180.02562 * 20 13 12 41 41 H 1.08996 * 109.47288 * 60.00437 * 22 21 2 42 42 H 1.09007 * 109.47159 * 180.02562 * 22 21 2 43 43 H 1.09003 * 109.46970 * 299.99521 * 22 21 2 44 44 H 1.09006 * 109.47022 * 59.99635 * 23 21 2 45 45 H 1.08993 * 109.47061 * 179.97438 * 23 21 2 46 46 H 1.09001 * 109.47182 * 300.00305 * 23 21 2 47 47 H 1.08994 * 109.47079 * 59.99917 * 24 21 2 48 48 H 1.09000 * 109.46814 * 180.02562 * 24 21 2 49 49 H 1.08998 * 109.46853 * 299.99912 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0648 1.2794 0.0000 4 6 1.9655 2.1476 1.0915 5 8 1.1884 1.8184 2.1571 6 6 1.8391 1.1959 3.2668 7 6 0.8110 0.9013 4.3609 8 6 2.6679 3.3471 1.0838 9 8 2.5790 4.1942 2.1441 10 6 3.3232 5.4116 2.0661 11 6 3.1008 6.2279 3.3407 12 6 3.4546 3.6821 -0.0068 13 6 3.5485 2.8250 -1.0894 14 6 4.4065 3.1995 -2.2705 15 8 5.4245 2.2130 -2.4516 16 14 5.1971 4.8581 -1.9625 17 1 6.0396 4.7859 -0.7418 18 1 6.0420 5.2273 -3.1265 19 1 4.1394 5.8832 -1.7742 20 6 2.8606 1.6296 -1.0924 21 14 2.2600 -1.6177 -0.0078 22 6 1.0493 -3.0337 -0.0153 23 6 3.3311 -1.7092 -1.5293 24 6 3.3310 -1.7238 1.5130 25 1 -0.5400 0.9314 0.0860 26 1 -0.5401 -0.9313 -0.0861 27 1 2.3000 0.2633 2.9412 28 1 2.6065 1.8631 3.6590 29 1 0.3497 1.8337 4.6866 30 1 0.0437 0.2340 3.9686 31 1 1.3074 0.4269 5.2075 32 1 4.3839 5.1830 1.9618 33 1 2.9891 5.9869 1.2027 34 1 2.0402 6.4565 3.4454 35 1 3.4352 5.6524 4.2038 36 1 3.6681 7.1568 3.2810 37 1 3.9964 4.6164 -0.0121 38 1 3.7881 3.2522 -3.1665 39 1 6.0137 2.1117 -1.6916 40 1 2.9377 0.9643 -1.9395 41 1 0.4231 -2.9715 -0.9052 42 1 1.5943 -3.9777 -0.0194 43 1 0.4224 -2.9804 0.8748 44 1 4.0395 -0.8807 -1.5254 45 1 3.8764 -2.6529 -1.5336 46 1 2.7045 -1.6471 -2.4191 47 1 2.7044 -1.6703 2.4031 48 1 3.8763 -2.6676 1.5082 49 1 4.0393 -0.8953 1.5169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419786.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:51:13 Heat of formation + Delta-G solvation = -116.015568 kcal Electronic energy + Delta-G solvation = -27187.296816 eV Core-core repulsion = 23624.836710 eV Total energy + Delta-G solvation = -3562.460106 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61342 -39.31754 -38.92688 -37.13509 -34.66906 -33.11213 -32.26616 -30.64350 -30.30837 -29.52668 -28.44832 -28.28011 -26.50915 -25.03760 -23.91362 -23.13745 -22.61734 -20.36425 -19.03325 -18.49717 -17.93924 -17.33982 -17.18442 -16.43324 -16.21638 -16.03698 -15.64280 -15.54071 -15.41615 -14.66539 -14.56133 -14.19294 -14.07749 -13.99812 -13.94563 -13.76045 -13.61193 -13.51839 -13.35787 -13.23185 -13.15966 -13.04723 -12.98640 -12.72790 -12.60127 -12.46537 -12.31165 -12.22699 -11.88623 -11.78694 -11.74489 -11.23890 -11.01096 -10.88282 -10.64353 -10.44794 -10.13754 -9.34294 -9.04756 0.02189 0.35629 1.06410 1.13402 1.35011 1.43443 1.74905 1.84096 1.87445 2.07715 2.20945 2.41760 2.63111 2.96930 3.43732 3.56641 3.73739 3.88976 3.95937 4.10897 4.17074 4.21989 4.31912 4.34126 4.36788 4.46720 4.51305 4.61943 4.67508 4.69456 4.70717 4.74148 4.75041 4.78620 4.80984 4.83691 4.89784 4.98978 4.99863 5.05335 5.11471 5.24964 5.26832 5.40621 5.45377 5.50329 5.52740 5.61551 5.70665 5.87806 6.23378 6.50700 6.79279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.377 4.377 3 C -0.008 4.008 4 C 0.071 3.929 5 O -0.316 6.316 6 C 0.057 3.943 7 C -0.151 4.151 8 C 0.120 3.880 9 O -0.303 6.303 10 C 0.048 3.952 11 C -0.151 4.151 12 C -0.215 4.215 13 C -0.083 4.083 14 C -0.078 4.078 15 O -0.535 6.535 16 Si 0.941 3.059 17 H -0.251 1.251 18 H -0.250 1.250 19 H -0.251 1.251 20 C -0.115 4.115 21 Si 1.047 2.953 22 C -0.449 4.449 23 C -0.448 4.448 24 C -0.448 4.448 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.376 0.624 40 H 0.140 0.860 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.404 -0.439 1.096 1.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.418 4.418 3 C -0.009 4.009 4 C 0.027 3.973 5 O -0.233 6.233 6 C -0.017 4.017 7 C -0.208 4.208 8 C 0.074 3.926 9 O -0.217 6.217 10 C -0.027 4.027 11 C -0.209 4.209 12 C -0.233 4.233 13 C -0.083 4.083 14 C -0.189 4.189 15 O -0.340 6.340 16 Si 0.764 3.236 17 H -0.175 1.175 18 H -0.174 1.174 19 H -0.174 1.174 20 C -0.134 4.134 21 Si 1.238 2.762 22 C -0.557 4.557 23 C -0.556 4.556 24 C -0.556 4.556 25 H 0.114 0.886 26 H 0.124 0.876 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.223 0.777 40 H 0.157 0.843 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.162 0.400 0.893 1.519 hybrid contribution 0.283 0.083 0.425 0.517 sum 1.445 0.483 1.318 2.014 Atomic orbital electron populations 1.24300 0.95347 1.02015 0.92630 1.27722 1.00950 1.07050 1.06041 1.19086 0.95758 0.92964 0.93050 1.18046 0.97625 0.91359 0.90313 1.86074 1.33559 1.79101 1.24578 1.22799 0.95945 0.96607 0.86329 1.21746 0.99431 1.02655 0.96934 1.19260 0.95021 0.90894 0.87438 1.86183 1.67044 1.29860 1.38613 1.22885 0.95456 0.84098 1.00228 1.21768 1.03578 0.99249 0.96258 1.20999 1.05241 1.01926 0.95162 1.19989 0.98335 0.94932 0.95093 1.24951 0.92105 1.02548 0.99292 1.86527 1.43938 1.59741 1.43751 0.85801 0.80616 0.76058 0.81089 1.17489 1.17403 1.17440 1.20938 0.97091 0.96858 0.98478 0.78395 0.66339 0.63421 0.67996 1.26139 1.11336 1.13608 1.04610 1.26146 1.09812 1.04747 1.14883 1.26146 1.09738 1.04552 1.15135 0.88571 0.87607 0.92554 0.93059 0.91688 0.91656 0.90780 0.92095 0.91958 0.91253 0.91382 0.90156 0.85604 0.86039 0.77669 0.84265 0.90978 0.90841 0.91071 0.90619 0.91135 0.91052 0.91179 0.90880 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.06 13.22 28.83 0.38 0.32 16 2 C -0.38 -0.23 3.85 -37.60 -0.14 -0.37 16 3 C -0.01 -0.02 4.93 -104.91 -0.52 -0.53 16 4 C 0.07 0.26 5.70 -38.71 -0.22 0.04 16 5 O -0.32 -1.26 8.99 -34.11 -0.31 -1.56 16 6 C 0.06 0.11 6.78 37.16 0.25 0.36 16 7 C -0.15 -0.06 10.28 37.16 0.38 0.32 16 8 C 0.12 0.42 6.69 -39.17 -0.26 0.16 16 9 O -0.30 -1.06 9.92 -34.33 -0.34 -1.40 16 10 C 0.05 0.03 5.46 37.15 0.20 0.23 16 11 C -0.15 0.13 10.28 37.15 0.38 0.51 16 12 C -0.21 -0.42 7.66 -39.39 -0.30 -0.72 16 13 C -0.08 -0.10 5.39 -104.67 -0.56 -0.66 16 14 C -0.08 0.01 2.82 36.01 0.10 0.12 16 15 O -0.53 -0.01 12.76 -35.23 -0.45 -0.46 16 16 Si 0.94 -0.24 25.05 -169.99 -4.26 -4.50 16 17 H -0.25 0.07 7.11 56.52 0.40 0.48 16 18 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 19 H -0.25 -0.07 7.11 56.52 0.40 0.33 16 20 C -0.12 -0.17 8.70 -39.18 -0.34 -0.51 16 21 Si 1.05 -1.66 12.31 -169.99 -2.09 -3.75 16 22 C -0.45 0.64 7.88 101.05 0.80 1.44 16 23 C -0.45 0.43 8.13 101.05 0.82 1.25 16 24 C -0.45 0.38 8.05 101.05 0.81 1.19 16 25 H 0.10 0.17 8.05 -52.48 -0.42 -0.25 16 26 H 0.11 -0.14 7.07 -52.49 -0.37 -0.51 16 27 H 0.06 0.05 6.37 -51.93 -0.33 -0.28 16 28 H 0.05 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.06 0.02 8.14 -51.93 -0.42 -0.41 16 31 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 32 H 0.06 -0.03 7.66 -51.93 -0.40 -0.43 16 33 H 0.06 0.00 7.66 -51.93 -0.40 -0.40 16 34 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 35 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 36 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 37 H 0.13 0.08 3.07 -52.49 -0.16 -0.08 16 38 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 39 H 0.38 -1.15 8.70 45.56 0.40 -0.75 16 40 H 0.14 0.06 6.92 -52.49 -0.36 -0.30 16 41 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 42 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 43 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 44 H 0.07 -0.04 7.14 -51.93 -0.37 -0.41 16 45 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 46 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 47 H 0.07 -0.06 6.89 -51.93 -0.36 -0.42 16 48 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 49 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 LS Contribution 396.38 15.07 5.97 5.97 Total: 0.00 -5.06 396.38 -7.53 -12.59 By element: Atomic # 1 Polarization: -2.18 SS G_CDS: -7.84 Total: -10.02 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 1.78 Total: 3.13 kcal Atomic # 8 Polarization: -2.33 SS G_CDS: -1.10 Total: -3.43 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: -6.35 Total: -8.25 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -5.06 -7.53 -12.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419786.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.424 kcal (2) G-P(sol) polarization free energy of solvation -5.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds