Wall clock time and date at job start Mon Mar 8 2021 07:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32607 * 1 3 3 C 1.47738 * 120.00054 * 2 1 4 4 C 1.39819 * 120.14648 * 64.52218 * 3 2 1 5 5 O 1.35928 * 120.14802 * 359.97438 * 4 3 2 6 6 C 1.42907 * 116.99807 * 95.61177 * 5 4 3 7 7 C 1.52998 * 109.46756 * 180.02562 * 6 5 4 8 8 C 1.39005 * 119.70907 * 179.79101 * 4 3 2 9 9 O 1.35999 * 120.01101 * 180.20612 * 8 4 3 10 10 C 1.42897 * 117.00557 * 180.25357 * 9 8 4 11 11 C 1.52991 * 109.47435 * 180.02562 * 10 9 8 12 12 C 1.38589 * 119.98571 * 0.45988 * 8 4 3 13 13 C 1.38404 * 120.29160 * 359.79591 * 12 8 4 14 14 C 1.50706 * 119.84864 * 179.97438 * 13 12 8 15 15 O 1.42906 * 109.47144 * 120.01675 * 14 13 12 16 16 Si 1.86299 * 109.46926 * 0.02562 * 14 13 12 17 17 H 1.48493 * 109.47215 * 60.00433 * 16 14 13 18 18 H 1.48500 * 109.46668 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.46985 * 299.99657 * 16 14 13 20 20 C 1.37919 * 120.30495 * 359.96964 * 13 12 8 21 21 Si 1.86797 * 119.99698 * 180.27450 * 2 1 3 22 22 C 1.86298 * 109.47248 * 0.02562 * 21 2 1 23 23 C 1.86304 * 109.47177 * 120.00205 * 21 2 1 24 24 C 1.86304 * 109.47043 * 240.00184 * 21 2 1 25 25 H 1.08003 * 119.99646 * 354.72740 * 1 2 3 26 26 H 1.07999 * 120.00431 * 174.71901 * 1 2 3 27 27 H 1.09000 * 109.47164 * 299.99814 * 6 5 4 28 28 H 1.08995 * 109.47071 * 60.00417 * 6 5 4 29 29 H 1.09004 * 109.47131 * 299.99493 * 7 6 5 30 30 H 1.08998 * 109.47991 * 60.00089 * 7 6 5 31 31 H 1.09003 * 109.46702 * 180.02562 * 7 6 5 32 32 H 1.09001 * 109.46918 * 300.00663 * 10 9 8 33 33 H 1.08999 * 109.46879 * 59.99557 * 10 9 8 34 34 H 1.09001 * 109.47345 * 300.00078 * 11 10 9 35 35 H 1.08993 * 109.47468 * 60.00145 * 11 10 9 36 36 H 1.09003 * 109.47379 * 180.02562 * 11 10 9 37 37 H 1.08002 * 119.85049 * 179.76231 * 12 8 4 38 38 H 1.08999 * 109.46626 * 240.01465 * 14 13 12 39 39 H 0.96696 * 113.99947 * 300.00225 * 15 14 13 40 40 H 1.07990 * 120.00340 * 180.02562 * 20 13 12 41 41 H 1.08996 * 109.47288 * 60.00437 * 22 21 2 42 42 H 1.09007 * 109.47159 * 180.02562 * 22 21 2 43 43 H 1.09003 * 109.46970 * 299.99521 * 22 21 2 44 44 H 1.09006 * 109.47022 * 59.99635 * 23 21 2 45 45 H 1.08993 * 109.47061 * 179.97438 * 23 21 2 46 46 H 1.09001 * 109.47182 * 300.00305 * 23 21 2 47 47 H 1.08994 * 109.47079 * 59.99917 * 24 21 2 48 48 H 1.09000 * 109.46814 * 180.02562 * 24 21 2 49 49 H 1.08998 * 109.46853 * 299.99912 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0648 1.2794 0.0000 4 6 1.9655 2.1476 1.0915 5 8 1.1884 1.8184 2.1571 6 6 1.8391 1.1959 3.2668 7 6 0.8110 0.9013 4.3609 8 6 2.6679 3.3471 1.0838 9 8 2.5790 4.1942 2.1441 10 6 3.3232 5.4116 2.0661 11 6 3.1008 6.2279 3.3407 12 6 3.4546 3.6821 -0.0068 13 6 3.5485 2.8250 -1.0894 14 6 4.4065 3.1995 -2.2705 15 8 5.4245 2.2130 -2.4516 16 14 5.1971 4.8581 -1.9625 17 1 6.0396 4.7859 -0.7418 18 1 6.0420 5.2273 -3.1265 19 1 4.1394 5.8832 -1.7742 20 6 2.8606 1.6296 -1.0924 21 14 2.2600 -1.6177 -0.0078 22 6 1.0493 -3.0337 -0.0153 23 6 3.3311 -1.7092 -1.5293 24 6 3.3310 -1.7238 1.5130 25 1 -0.5400 0.9314 0.0860 26 1 -0.5401 -0.9313 -0.0861 27 1 2.3000 0.2633 2.9412 28 1 2.6065 1.8631 3.6590 29 1 0.3497 1.8337 4.6866 30 1 0.0437 0.2340 3.9686 31 1 1.3074 0.4269 5.2075 32 1 4.3839 5.1830 1.9618 33 1 2.9891 5.9869 1.2027 34 1 2.0402 6.4565 3.4454 35 1 3.4352 5.6524 4.2038 36 1 3.6681 7.1568 3.2810 37 1 3.9964 4.6164 -0.0121 38 1 3.7881 3.2522 -3.1665 39 1 6.0137 2.1117 -1.6916 40 1 2.9377 0.9643 -1.9395 41 1 0.4231 -2.9715 -0.9052 42 1 1.5943 -3.9777 -0.0194 43 1 0.4224 -2.9804 0.8748 44 1 4.0395 -0.8807 -1.5254 45 1 3.8764 -2.6529 -1.5336 46 1 2.7045 -1.6471 -2.4191 47 1 2.7044 -1.6703 2.4031 48 1 3.8763 -2.6676 1.5082 49 1 4.0393 -0.8953 1.5169 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419786.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:51:12 Heat of formation + Delta-G solvation = -106.789043 kcal Electronic energy + Delta-G solvation = -27186.896724 eV Core-core repulsion = 23624.836710 eV Total energy + Delta-G solvation = -3562.060014 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.172 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74467 -39.45945 -39.01821 -37.18085 -34.71861 -33.16155 -32.32435 -30.70988 -30.41080 -29.42189 -28.35087 -28.17041 -26.56654 -25.09133 -24.00715 -23.19159 -22.73409 -20.43913 -19.13331 -18.59662 -18.05037 -17.40082 -17.28248 -16.50234 -16.26216 -16.07376 -15.74159 -15.56212 -15.52894 -14.70669 -14.61150 -14.16097 -14.05940 -13.96535 -13.87367 -13.70896 -13.53779 -13.51806 -13.33866 -13.19398 -13.08494 -12.96926 -12.95334 -12.77697 -12.61702 -12.50889 -12.37158 -12.25882 -11.95513 -11.82067 -11.77715 -11.21627 -11.04054 -10.78569 -10.73002 -10.45419 -10.15425 -9.44733 -9.19970 -0.10005 0.21468 1.06596 1.13428 1.36261 1.43457 1.80741 1.83516 2.00222 2.06754 2.23178 2.34124 2.68669 2.83692 3.46426 3.53183 3.66651 3.89545 3.94355 4.05897 4.06591 4.21193 4.23107 4.24076 4.31005 4.40022 4.42462 4.63901 4.71684 4.78833 4.81441 4.81465 4.82544 4.87047 4.88085 4.90570 4.91254 4.92957 4.96923 4.98034 5.13068 5.16716 5.20850 5.30084 5.41982 5.56343 5.59769 5.67588 5.71548 5.85335 6.11547 6.63058 6.67458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.389 4.389 3 C -0.012 4.012 4 C 0.049 3.951 5 O -0.332 6.332 6 C 0.054 3.946 7 C -0.147 4.147 8 C 0.104 3.896 9 O -0.323 6.323 10 C 0.040 3.960 11 C -0.149 4.149 12 C -0.219 4.219 13 C -0.081 4.081 14 C -0.075 4.075 15 O -0.544 6.544 16 Si 0.965 3.035 17 H -0.249 1.249 18 H -0.266 1.266 19 H -0.259 1.259 20 C -0.120 4.120 21 Si 1.098 2.902 22 C -0.456 4.456 23 C -0.457 4.457 24 C -0.461 4.461 25 H 0.077 0.923 26 H 0.126 0.874 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.389 0.611 40 H 0.150 0.850 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.866 -1.169 0.766 2.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.427 4.427 3 C -0.013 4.013 4 C 0.004 3.996 5 O -0.249 6.249 6 C -0.020 4.020 7 C -0.204 4.204 8 C 0.058 3.942 9 O -0.237 6.237 10 C -0.035 4.035 11 C -0.206 4.206 12 C -0.238 4.238 13 C -0.081 4.081 14 C -0.185 4.185 15 O -0.351 6.351 16 Si 0.789 3.211 17 H -0.173 1.173 18 H -0.191 1.191 19 H -0.183 1.183 20 C -0.138 4.138 21 Si 1.286 2.714 22 C -0.564 4.564 23 C -0.565 4.565 24 C -0.567 4.567 25 H 0.095 0.905 26 H 0.144 0.856 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.238 0.762 40 H 0.168 0.832 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.629 -0.313 0.579 1.757 hybrid contribution 0.160 0.343 0.530 0.652 sum 1.790 0.030 1.109 2.106 Atomic orbital electron populations 1.24385 0.95455 1.02118 0.92944 1.28240 1.01199 1.07575 1.05699 1.19320 0.95794 0.93399 0.92759 1.18328 0.98391 0.92047 0.90817 1.86046 1.34328 1.79417 1.25109 1.22917 0.96231 0.96624 0.86277 1.21759 0.99259 1.02392 0.97024 1.19473 0.95665 0.91120 0.87983 1.86158 1.67776 1.30749 1.39004 1.23116 0.95825 0.83435 1.01110 1.21791 1.03444 0.99812 0.95512 1.21138 1.05161 1.02502 0.94990 1.20178 0.98073 0.94621 0.95240 1.24972 0.92042 1.02483 0.99042 1.86499 1.44142 1.59709 1.44757 0.85471 0.79820 0.75483 0.80315 1.17291 1.19051 1.18334 1.21112 0.96945 0.97179 0.98553 0.77659 0.65214 0.61670 0.66873 1.26196 1.11516 1.13750 1.04915 1.26247 1.10011 1.04843 1.15364 1.26289 1.09979 1.04624 1.15810 0.90453 0.85595 0.91713 0.93877 0.92549 0.91445 0.89013 0.91111 0.91523 0.91966 0.91651 0.88170 0.84616 0.85129 0.76197 0.83224 0.90590 0.90386 0.90905 0.91008 0.90672 0.90907 0.91234 0.90220 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.20 13.22 66.66 0.88 0.68 16 2 C -0.39 -0.64 3.85 23.62 0.09 -0.55 16 3 C -0.01 -0.06 4.93 -20.05 -0.10 -0.16 16 4 C 0.05 0.43 5.70 22.84 0.13 0.56 16 5 O -0.33 -3.22 8.99 -78.79 -0.71 -3.93 16 6 C 0.05 0.27 6.78 71.98 0.49 0.75 16 7 C -0.15 -0.22 10.28 71.98 0.74 0.52 16 8 C 0.10 0.87 6.69 22.54 0.15 1.03 16 9 O -0.32 -2.77 9.92 -79.59 -0.79 -3.56 16 10 C 0.04 0.08 5.46 71.98 0.39 0.47 16 11 C -0.15 0.17 10.28 71.98 0.74 0.91 16 12 C -0.22 -1.01 7.66 22.39 0.17 -0.84 16 13 C -0.08 -0.22 5.39 -19.90 -0.11 -0.32 16 14 C -0.07 0.05 2.82 71.24 0.20 0.25 16 15 O -0.54 0.28 12.76 -148.98 -1.90 -1.62 16 16 Si 0.96 -0.61 25.05 68.60 1.72 1.11 16 17 H -0.25 0.26 7.11 99.48 0.71 0.97 16 18 H -0.27 -0.53 7.11 99.48 0.71 0.18 16 19 H -0.26 -0.18 7.11 99.48 0.71 0.52 16 20 C -0.12 -0.40 8.70 22.53 0.20 -0.20 16 21 Si 1.10 -3.93 12.31 68.60 0.84 -3.08 16 22 C -0.46 1.78 7.88 113.37 0.89 2.67 16 23 C -0.46 1.16 8.13 113.37 0.92 2.08 16 24 C -0.46 0.84 8.05 113.37 0.91 1.76 16 25 H 0.08 0.41 8.05 -2.91 -0.02 0.39 16 26 H 0.13 -0.37 7.07 -2.91 -0.02 -0.39 16 27 H 0.06 0.17 6.37 -2.39 -0.02 0.16 16 28 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.09 -0.22 8.14 -2.39 -0.02 -0.23 16 32 H 0.07 -0.04 7.66 -2.39 -0.02 -0.06 16 33 H 0.07 0.04 7.66 -2.39 -0.02 0.02 16 34 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 37 H 0.14 0.22 3.07 -2.91 -0.01 0.22 16 38 H 0.13 -0.34 7.96 -2.39 -0.02 -0.36 16 39 H 0.39 -2.58 8.70 -74.06 -0.64 -3.22 16 40 H 0.15 0.11 6.92 -2.92 -0.02 0.09 16 41 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 42 H 0.08 -0.35 7.96 -2.38 -0.02 -0.36 16 43 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 44 H 0.07 -0.11 7.14 -2.38 -0.02 -0.13 16 45 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 46 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 47 H 0.07 -0.12 6.89 -2.39 -0.02 -0.14 16 48 H 0.08 -0.25 7.96 -2.39 -0.02 -0.27 16 49 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 Total: 0.00 -12.33 396.38 6.90 -5.43 By element: Atomic # 1 Polarization: -4.98 SS G_CDS: 1.03 Total: -3.95 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 6.70 Total: 9.60 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -3.40 Total: -9.11 kcal Atomic # 14 Polarization: -4.53 SS G_CDS: 2.56 Total: -1.97 kcal Total: -12.33 6.90 -5.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419786.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.363 kcal (2) G-P(sol) polarization free energy of solvation -12.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -5.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds