Wall clock time and date at job start Mon Mar 8 2021 07:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32597 * 1 3 3 C 1.47776 * 119.99791 * 2 1 4 4 C 1.39555 * 120.08411 * 180.02562 * 3 2 1 5 5 C 1.37880 * 119.91545 * 179.97438 * 4 3 2 6 6 C 1.38835 * 120.08232 * 359.97438 * 5 4 3 7 7 O 1.35865 * 119.91296 * 180.02562 * 6 5 4 8 8 C 1.42899 * 116.99998 * 0.02562 * 7 6 5 9 9 C 1.53004 * 109.47154 * 180.02562 * 8 7 6 10 10 C 1.53007 * 109.46904 * 179.97438 * 9 8 7 11 11 C 1.38882 * 120.17727 * 0.04038 * 6 5 4 12 12 C 1.50696 * 119.96218 * 179.97438 * 11 6 5 13 13 O 1.42900 * 109.46984 * 285.00514 * 12 11 6 14 14 Si 1.86295 * 109.47479 * 165.00613 * 12 11 6 15 15 H 1.48503 * 109.46934 * 300.00279 * 14 12 11 16 16 H 1.48498 * 109.46989 * 59.99653 * 14 12 11 17 17 H 1.48494 * 109.47513 * 180.02562 * 14 12 11 18 18 C 1.37839 * 120.08017 * 359.70819 * 11 6 5 19 19 Si 1.86801 * 119.99996 * 179.97438 * 2 1 3 20 20 C 1.86300 * 109.46957 * 359.97438 * 19 2 1 21 21 C 1.86298 * 109.47026 * 120.00101 * 19 2 1 22 22 C 1.86301 * 109.47053 * 240.00115 * 19 2 1 23 23 H 1.08002 * 120.00233 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.99999 * 359.72499 * 1 2 3 25 25 H 1.08008 * 120.04338 * 359.97438 * 4 3 2 26 26 H 1.07994 * 119.95739 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.46950 * 300.00120 * 8 7 6 28 28 H 1.08996 * 109.47459 * 60.00039 * 8 7 6 29 29 H 1.08997 * 109.46771 * 299.99461 * 9 8 7 30 30 H 1.08996 * 109.46951 * 59.99672 * 9 8 7 31 31 H 1.08998 * 109.46687 * 179.97438 * 10 9 8 32 32 H 1.08999 * 109.46903 * 299.99918 * 10 9 8 33 33 H 1.09007 * 109.46905 * 60.00052 * 10 9 8 34 34 H 1.09005 * 109.46792 * 45.00121 * 12 11 6 35 35 H 0.96703 * 113.99999 * 179.97438 * 13 12 11 36 36 H 1.07996 * 120.04068 * 180.29552 * 18 11 6 37 37 H 1.09003 * 109.46704 * 60.00197 * 20 19 2 38 38 H 1.09003 * 109.46993 * 180.02562 * 20 19 2 39 39 H 1.08999 * 109.47326 * 299.99568 * 20 19 2 40 40 H 1.08998 * 109.47156 * 60.00082 * 21 19 2 41 41 H 1.08995 * 109.46874 * 180.02562 * 21 19 2 42 42 H 1.08997 * 109.46887 * 299.99740 * 21 19 2 43 43 H 1.09004 * 109.47199 * 59.99984 * 22 19 2 44 44 H 1.08998 * 109.47265 * 180.02562 * 22 19 2 45 45 H 1.09007 * 109.47146 * 300.00054 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0648 1.2798 0.0000 4 6 3.4603 1.2819 -0.0005 5 6 4.1462 2.4780 -0.0011 6 6 3.4502 3.6793 -0.0016 7 8 4.1295 4.8559 -0.0027 8 6 5.5565 4.7812 -0.0037 9 6 6.1413 6.1951 -0.0042 10 6 7.6692 6.1150 -0.0047 11 6 2.0613 3.6815 -0.0008 12 6 1.3107 4.9882 -0.0008 13 8 1.3768 5.5754 1.3003 14 14 -0.4700 4.6816 -0.4540 15 1 -0.5386 4.0712 -1.8061 16 1 -1.0812 3.7596 0.5368 17 1 -1.2095 5.9693 -0.4546 18 6 1.3686 2.4898 -0.0055 19 14 2.2600 -1.6177 0.0007 20 6 1.0493 -3.0337 0.0021 21 6 3.3310 -1.7171 -1.5203 22 6 3.3310 -1.7157 1.5219 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9353 0.0045 25 1 4.0025 0.3477 -0.0005 26 1 5.2261 2.4804 -0.0019 27 1 5.8931 4.2494 0.8863 28 1 5.8918 4.2487 -0.8937 29 1 5.8047 6.7271 -0.8939 30 1 5.8059 6.7272 0.8860 31 1 8.0858 7.1222 -0.0054 32 1 8.0054 5.5830 0.8853 33 1 8.0049 5.5826 -0.8947 34 1 1.7595 5.6649 -0.7280 35 1 0.9141 6.4214 1.3740 36 1 0.2887 2.4922 -0.0096 37 1 0.4223 -2.9765 -0.8877 38 1 1.5943 -3.9777 0.0030 39 1 0.4230 -2.9755 0.8923 40 1 4.0393 -0.8886 -1.5207 41 1 3.8757 -2.6612 -1.5201 42 1 2.7044 -1.6598 -2.4103 43 1 2.7043 -1.6576 2.4119 44 1 3.8764 -2.6595 1.5222 45 1 4.0394 -0.8872 1.5216 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:54:46 Heat of formation + Delta-G solvation = -78.967134 kcal Electronic energy + Delta-G solvation = -21992.980318 eV Core-core repulsion = 18906.346564 eV Total energy + Delta-G solvation = -3086.633754 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.28521 -38.93001 -37.55789 -35.15400 -34.11045 -32.87209 -29.89284 -29.58071 -28.40538 -28.37036 -27.53060 -26.56570 -24.08847 -22.98924 -21.80226 -20.13211 -19.14990 -18.38908 -17.36073 -17.16694 -16.68907 -16.11355 -15.63841 -15.15669 -14.98478 -14.93114 -14.79439 -14.22187 -14.15257 -14.04641 -13.91860 -13.66352 -13.52512 -13.39728 -13.25990 -13.17598 -13.10291 -12.98109 -12.87952 -12.62706 -12.48547 -12.16499 -12.06474 -11.74488 -11.68181 -11.61841 -11.18264 -10.91896 -10.69741 -10.43333 -10.18853 -9.88419 -8.62129 0.10259 0.32743 1.18767 1.37040 1.45746 1.52135 1.71535 1.84029 1.92418 2.12950 2.25119 2.54895 2.91667 3.54569 3.79307 3.83749 3.89185 3.98648 4.02148 4.17610 4.21727 4.30885 4.43267 4.44477 4.53521 4.61932 4.68502 4.69453 4.69966 4.73656 4.74774 4.76801 4.79194 4.85827 4.97970 5.01036 5.08447 5.14613 5.22726 5.34233 5.43279 5.44582 5.52530 5.54553 5.59469 5.80441 5.97210 6.50309 6.72510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.362 4.362 3 C -0.068 4.068 4 C -0.076 4.076 5 C -0.206 4.206 6 C 0.156 3.844 7 O -0.304 6.304 8 C 0.056 3.944 9 C -0.123 4.123 10 C -0.151 4.151 11 C -0.106 4.106 12 C -0.068 4.068 13 O -0.540 6.540 14 Si 0.937 3.063 15 H -0.247 1.247 16 H -0.248 1.248 17 H -0.254 1.254 18 C -0.084 4.084 19 Si 1.045 2.955 20 C -0.449 4.449 21 C -0.450 4.450 22 C -0.450 4.450 23 H 0.108 0.892 24 H 0.092 0.908 25 H 0.133 0.867 26 H 0.132 0.868 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.376 0.624 36 H 0.130 0.870 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.386 -0.506 -1.131 1.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.403 4.403 3 C -0.068 4.068 4 C -0.094 4.094 5 C -0.224 4.224 6 C 0.109 3.891 7 O -0.217 6.217 8 C -0.019 4.019 9 C -0.160 4.160 10 C -0.208 4.208 11 C -0.107 4.107 12 C -0.178 4.178 13 O -0.346 6.346 14 Si 0.760 3.240 15 H -0.171 1.171 16 H -0.171 1.171 17 H -0.178 1.178 18 C -0.102 4.102 19 Si 1.237 2.763 20 C -0.557 4.557 21 C -0.557 4.557 22 C -0.557 4.557 23 H 0.126 0.874 24 H 0.110 0.890 25 H 0.150 0.850 26 H 0.150 0.850 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.223 0.777 36 H 0.147 0.853 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.778 -0.925 -1.237 1.730 hybrid contribution 0.232 0.588 0.034 0.633 sum 1.010 -0.337 -1.203 1.606 Atomic orbital electron populations 1.24369 0.95868 1.01917 0.96003 1.27998 1.01051 1.08078 1.03199 1.18707 0.92783 0.92574 1.02721 1.21197 0.93344 0.97720 0.97111 1.21201 1.00382 0.91939 1.08916 1.18760 0.90805 0.84763 0.94724 1.86097 1.19973 1.27787 1.87865 1.22942 0.78255 0.99271 1.01470 1.21476 0.95700 0.95021 1.03834 1.21701 0.94125 1.02731 1.02249 1.18489 0.90565 0.93910 1.07714 1.24524 1.09589 0.94627 0.89087 1.86539 1.78985 1.40209 1.28842 0.85932 0.75644 0.81380 0.81059 1.17051 1.17149 1.17815 1.21103 0.99697 0.91094 0.98290 0.78419 0.66530 0.63630 0.67762 1.26135 1.11351 1.13632 1.04613 1.26197 1.09696 1.04559 1.15249 1.26205 1.09703 1.04546 1.15289 0.87397 0.89029 0.84966 0.85005 0.91901 0.91963 0.90827 0.90681 0.91574 0.92301 0.92341 0.90705 0.77673 0.85301 0.91022 0.90830 0.91016 0.91055 0.90996 0.90964 0.90952 0.91006 0.91065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.07 13.39 28.83 0.39 0.32 16 2 C -0.36 -0.30 4.70 -37.59 -0.18 -0.48 16 3 C -0.07 -0.17 5.84 -105.00 -0.61 -0.78 16 4 C -0.08 -0.12 8.70 -39.22 -0.34 -0.47 16 5 C -0.21 -0.42 9.02 -39.49 -0.36 -0.78 16 6 C 0.16 0.57 6.67 -39.12 -0.26 0.31 16 7 O -0.30 -1.01 9.45 -19.32 -0.18 -1.19 16 8 C 0.06 0.02 4.74 37.16 0.18 0.20 16 9 C -0.12 0.05 6.30 -26.73 -0.17 -0.11 16 10 C -0.15 0.24 9.91 37.16 0.37 0.61 16 11 C -0.11 -0.40 5.30 -104.53 -0.55 -0.95 16 12 C -0.07 -0.14 2.36 36.00 0.09 -0.06 16 13 O -0.54 -1.34 12.86 -35.23 -0.45 -1.79 16 14 Si 0.94 0.97 25.48 -169.99 -4.33 -3.36 16 15 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 16 H -0.25 -0.45 6.74 56.52 0.38 -0.07 16 17 H -0.25 -0.20 7.11 56.52 0.40 0.20 16 18 C -0.08 -0.28 8.00 -39.22 -0.31 -0.59 16 19 Si 1.04 -1.67 10.79 -169.99 -1.83 -3.50 16 20 C -0.45 0.63 7.86 101.05 0.79 1.42 16 21 C -0.45 0.49 8.65 101.05 0.87 1.37 16 22 C -0.45 0.40 8.65 101.05 0.87 1.27 16 23 H 0.11 -0.15 7.05 -52.49 -0.37 -0.52 16 24 H 0.09 0.06 6.03 -52.48 -0.32 -0.26 16 25 H 0.13 -0.09 3.69 -52.48 -0.19 -0.28 16 26 H 0.13 -0.02 6.28 -52.49 -0.33 -0.35 16 27 H 0.06 -0.01 7.65 -51.93 -0.40 -0.41 16 28 H 0.06 -0.04 7.65 -51.93 -0.40 -0.44 16 29 H 0.07 -0.02 8.14 -51.93 -0.42 -0.45 16 30 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 31 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 32 H 0.06 -0.10 8.14 -51.93 -0.42 -0.53 16 33 H 0.06 -0.11 8.14 -51.92 -0.42 -0.54 16 34 H 0.07 0.09 7.82 -51.93 -0.41 -0.32 16 35 H 0.38 -0.79 8.74 45.56 0.40 -0.39 16 36 H 0.13 0.29 2.98 -52.49 -0.16 0.14 16 37 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 38 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 39 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 40 H 0.07 -0.08 6.57 -51.93 -0.34 -0.42 16 41 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 42 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 43 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 44 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 45 H 0.07 -0.06 6.57 -51.92 -0.34 -0.40 16 LS Contribution 357.13 15.07 5.38 5.38 Total: 0.00 -5.36 357.13 -7.32 -12.68 By element: Atomic # 1 Polarization: -2.82 SS G_CDS: -6.68 Total: -9.49 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 0.77 Total: 1.28 kcal Atomic # 8 Polarization: -2.35 SS G_CDS: -0.64 Total: -2.98 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: -6.17 Total: -6.87 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -5.36 -7.32 -12.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.286 kcal (2) G-P(sol) polarization free energy of solvation -5.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds