Wall clock time and date at job start Mon Mar 8 2021 07:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32597 * 1 3 3 C 1.47776 * 119.99791 * 2 1 4 4 C 1.39555 * 120.08411 * 180.02562 * 3 2 1 5 5 C 1.37880 * 119.91545 * 179.97438 * 4 3 2 6 6 C 1.38835 * 120.08232 * 359.97438 * 5 4 3 7 7 O 1.35865 * 119.91296 * 180.02562 * 6 5 4 8 8 C 1.42899 * 116.99998 * 0.02562 * 7 6 5 9 9 C 1.53004 * 109.47154 * 180.02562 * 8 7 6 10 10 C 1.53007 * 109.46904 * 179.97438 * 9 8 7 11 11 C 1.38882 * 120.17727 * 0.04038 * 6 5 4 12 12 C 1.50696 * 119.96218 * 179.97438 * 11 6 5 13 13 O 1.42900 * 109.46984 * 285.00514 * 12 11 6 14 14 Si 1.86295 * 109.47479 * 165.00613 * 12 11 6 15 15 H 1.48503 * 109.46934 * 300.00279 * 14 12 11 16 16 H 1.48498 * 109.46989 * 59.99653 * 14 12 11 17 17 H 1.48494 * 109.47513 * 180.02562 * 14 12 11 18 18 C 1.37839 * 120.08017 * 359.70819 * 11 6 5 19 19 Si 1.86801 * 119.99996 * 179.97438 * 2 1 3 20 20 C 1.86300 * 109.46957 * 359.97438 * 19 2 1 21 21 C 1.86298 * 109.47026 * 120.00101 * 19 2 1 22 22 C 1.86301 * 109.47053 * 240.00115 * 19 2 1 23 23 H 1.08002 * 120.00233 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.99999 * 359.72499 * 1 2 3 25 25 H 1.08008 * 120.04338 * 359.97438 * 4 3 2 26 26 H 1.07994 * 119.95739 * 180.02562 * 5 4 3 27 27 H 1.09004 * 109.46950 * 300.00120 * 8 7 6 28 28 H 1.08996 * 109.47459 * 60.00039 * 8 7 6 29 29 H 1.08997 * 109.46771 * 299.99461 * 9 8 7 30 30 H 1.08996 * 109.46951 * 59.99672 * 9 8 7 31 31 H 1.08998 * 109.46687 * 179.97438 * 10 9 8 32 32 H 1.08999 * 109.46903 * 299.99918 * 10 9 8 33 33 H 1.09007 * 109.46905 * 60.00052 * 10 9 8 34 34 H 1.09005 * 109.46792 * 45.00121 * 12 11 6 35 35 H 0.96703 * 113.99999 * 179.97438 * 13 12 11 36 36 H 1.07996 * 120.04068 * 180.29552 * 18 11 6 37 37 H 1.09003 * 109.46704 * 60.00197 * 20 19 2 38 38 H 1.09003 * 109.46993 * 180.02562 * 20 19 2 39 39 H 1.08999 * 109.47326 * 299.99568 * 20 19 2 40 40 H 1.08998 * 109.47156 * 60.00082 * 21 19 2 41 41 H 1.08995 * 109.46874 * 180.02562 * 21 19 2 42 42 H 1.08997 * 109.46887 * 299.99740 * 21 19 2 43 43 H 1.09004 * 109.47199 * 59.99984 * 22 19 2 44 44 H 1.08998 * 109.47265 * 180.02562 * 22 19 2 45 45 H 1.09007 * 109.47146 * 300.00054 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0648 1.2798 0.0000 4 6 3.4603 1.2819 -0.0005 5 6 4.1462 2.4780 -0.0011 6 6 3.4502 3.6793 -0.0016 7 8 4.1295 4.8559 -0.0027 8 6 5.5565 4.7812 -0.0037 9 6 6.1413 6.1951 -0.0042 10 6 7.6692 6.1150 -0.0047 11 6 2.0613 3.6815 -0.0008 12 6 1.3107 4.9882 -0.0008 13 8 1.3768 5.5754 1.3003 14 14 -0.4700 4.6816 -0.4540 15 1 -0.5386 4.0712 -1.8061 16 1 -1.0812 3.7596 0.5368 17 1 -1.2095 5.9693 -0.4546 18 6 1.3686 2.4898 -0.0055 19 14 2.2600 -1.6177 0.0007 20 6 1.0493 -3.0337 0.0021 21 6 3.3310 -1.7171 -1.5203 22 6 3.3310 -1.7157 1.5219 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9353 0.0045 25 1 4.0025 0.3477 -0.0005 26 1 5.2261 2.4804 -0.0019 27 1 5.8931 4.2494 0.8863 28 1 5.8918 4.2487 -0.8937 29 1 5.8047 6.7271 -0.8939 30 1 5.8059 6.7272 0.8860 31 1 8.0858 7.1222 -0.0054 32 1 8.0054 5.5830 0.8853 33 1 8.0049 5.5826 -0.8947 34 1 1.7595 5.6649 -0.7280 35 1 0.9141 6.4214 1.3740 36 1 0.2887 2.4922 -0.0096 37 1 0.4223 -2.9765 -0.8877 38 1 1.5943 -3.9777 0.0030 39 1 0.4230 -2.9755 0.8923 40 1 4.0393 -0.8886 -1.5207 41 1 3.8757 -2.6612 -1.5201 42 1 2.7044 -1.6598 -2.4103 43 1 2.7043 -1.6576 2.4119 44 1 3.8764 -2.6595 1.5222 45 1 4.0394 -0.8872 1.5216 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:54:45 Heat of formation + Delta-G solvation = -70.585131 kcal Electronic energy + Delta-G solvation = -21992.616847 eV Core-core repulsion = 18906.346564 eV Total energy + Delta-G solvation = -3086.270283 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41284 -39.04194 -37.69271 -35.15591 -34.14151 -33.00110 -29.94271 -29.48425 -28.28960 -28.27872 -27.52115 -26.68447 -24.17411 -23.03564 -21.86524 -20.19335 -19.27139 -18.52912 -17.47980 -17.22090 -16.75886 -16.22266 -15.72999 -15.21781 -15.00963 -14.99346 -14.85260 -14.18924 -14.14346 -13.94602 -13.92748 -13.69191 -13.47876 -13.33747 -13.15984 -13.11646 -12.99428 -12.94456 -12.91803 -12.64873 -12.48489 -12.22432 -12.11743 -11.83819 -11.72172 -11.65351 -11.15823 -10.79605 -10.69777 -10.42809 -10.31151 -10.04183 -8.75338 -0.02326 0.16829 1.07292 1.33102 1.36440 1.42259 1.79957 1.80604 1.98373 2.16439 2.20009 2.64218 2.80520 3.46696 3.72018 3.75178 3.91387 3.94640 3.97943 4.09563 4.20056 4.26653 4.34753 4.47416 4.51922 4.58096 4.75933 4.78240 4.82074 4.83115 4.85798 4.86259 4.88544 4.89776 4.92394 5.06103 5.09636 5.14887 5.22384 5.29880 5.32757 5.44991 5.58199 5.66016 5.68540 5.71180 5.92439 6.39208 6.79251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.381 4.381 3 C -0.078 4.078 4 C -0.080 4.080 5 C -0.208 4.208 6 C 0.136 3.864 7 O -0.320 6.320 8 C 0.050 3.950 9 C -0.120 4.120 10 C -0.148 4.148 11 C -0.127 4.127 12 C -0.073 4.073 13 O -0.560 6.560 14 Si 0.971 3.029 15 H -0.257 1.257 16 H -0.263 1.263 17 H -0.247 1.247 18 C -0.104 4.104 19 Si 1.097 2.903 20 C -0.458 4.458 21 C -0.460 4.460 22 C -0.462 4.462 23 H 0.127 0.873 24 H 0.083 0.917 25 H 0.155 0.845 26 H 0.152 0.848 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.394 0.606 36 H 0.132 0.868 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.928 -1.300 -1.305 2.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.420 4.420 3 C -0.079 4.079 4 C -0.098 4.098 5 C -0.227 4.227 6 C 0.090 3.910 7 O -0.234 6.234 8 C -0.024 4.024 9 C -0.158 4.158 10 C -0.205 4.205 11 C -0.128 4.128 12 C -0.182 4.182 13 O -0.368 6.368 14 Si 0.794 3.206 15 H -0.181 1.181 16 H -0.188 1.188 17 H -0.170 1.170 18 C -0.121 4.121 19 Si 1.285 2.715 20 C -0.566 4.566 21 C -0.567 4.567 22 C -0.569 4.569 23 H 0.145 0.855 24 H 0.101 0.899 25 H 0.172 0.828 26 H 0.170 0.830 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.243 0.757 36 H 0.149 0.851 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.317 -1.677 -1.408 2.555 hybrid contribution 0.067 0.847 0.105 0.856 sum 1.384 -0.830 -1.303 2.074 Atomic orbital electron populations 1.24583 0.96063 1.02489 0.95700 1.28567 1.01512 1.08650 1.03237 1.19045 0.93500 0.93041 1.02269 1.21487 0.93207 0.98548 0.96528 1.21486 1.01467 0.91582 1.08139 1.18984 0.91079 0.85401 0.95549 1.86069 1.21306 1.28012 1.88023 1.23128 0.77089 0.99978 1.02235 1.21467 0.96538 0.94467 1.03283 1.21688 0.93018 1.03098 1.02695 1.18808 0.91201 0.94716 1.08092 1.24646 1.10370 0.94247 0.88983 1.86485 1.79610 1.41525 1.29186 0.85450 0.74462 0.80960 0.79731 1.18105 1.18778 1.17040 1.21293 1.00057 0.91605 0.99193 0.77654 0.65390 0.61701 0.66724 1.26215 1.11600 1.13953 1.04802 1.26305 1.09961 1.04985 1.15441 1.26340 1.10003 1.04941 1.15599 0.85526 0.89881 0.82815 0.83036 0.91383 0.90840 0.91118 0.91501 0.91258 0.91980 0.91751 0.90313 0.75684 0.85112 0.90792 0.90340 0.90918 0.91057 0.90250 0.91238 0.91439 0.90237 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.22 13.39 66.66 0.89 0.67 16 2 C -0.38 -0.76 4.70 23.64 0.11 -0.65 16 3 C -0.08 -0.46 5.84 -20.11 -0.12 -0.58 16 4 C -0.08 -0.28 8.70 22.50 0.20 -0.09 16 5 C -0.21 -0.94 9.02 22.33 0.20 -0.74 16 6 C 0.14 1.15 6.67 22.57 0.15 1.30 16 7 O -0.32 -2.48 9.45 -92.03 -0.87 -3.35 16 8 C 0.05 0.06 4.74 71.98 0.34 0.40 16 9 C -0.12 0.06 6.30 30.60 0.19 0.25 16 10 C -0.15 0.52 9.91 71.98 0.71 1.23 16 11 C -0.13 -1.16 5.30 -19.81 -0.11 -1.27 16 12 C -0.07 -0.41 2.36 71.23 0.17 -0.24 16 13 O -0.56 -3.47 12.86 -148.98 -1.92 -5.38 16 14 Si 0.97 2.98 25.48 68.60 1.75 4.73 16 15 H -0.26 -1.11 7.11 99.48 0.71 -0.40 16 16 H -0.26 -1.38 6.74 99.48 0.67 -0.70 16 17 H -0.25 -0.37 7.11 99.48 0.71 0.33 16 18 C -0.10 -0.86 8.00 22.50 0.18 -0.68 16 19 Si 1.10 -4.17 10.79 68.60 0.74 -3.43 16 20 C -0.46 1.71 7.86 113.37 0.89 2.60 16 21 C -0.46 1.38 8.65 113.37 0.98 2.36 16 22 C -0.46 1.10 8.65 113.37 0.98 2.08 16 23 H 0.13 -0.38 7.05 -2.91 -0.02 -0.40 16 24 H 0.08 0.22 6.03 -2.91 -0.02 0.20 16 25 H 0.15 -0.29 3.69 -2.91 -0.01 -0.30 16 26 H 0.15 -0.10 6.28 -2.91 -0.02 -0.11 16 27 H 0.07 -0.01 7.65 -2.38 -0.02 -0.03 16 28 H 0.07 -0.10 7.65 -2.39 -0.02 -0.12 16 29 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 33 H 0.06 -0.29 8.14 -2.38 -0.02 -0.31 16 34 H 0.08 0.30 7.82 -2.38 -0.02 0.28 16 35 H 0.39 -1.30 8.74 -74.06 -0.65 -1.95 16 36 H 0.13 0.86 2.98 -2.91 -0.01 0.85 16 37 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 38 H 0.08 -0.35 7.96 -2.39 -0.02 -0.36 16 39 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 40 H 0.07 -0.21 6.57 -2.39 -0.02 -0.22 16 41 H 0.08 -0.35 7.96 -2.39 -0.02 -0.36 16 42 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 43 H 0.07 -0.08 7.96 -2.38 -0.02 -0.10 16 44 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 45 H 0.07 -0.15 6.57 -2.38 -0.02 -0.17 16 Total: 0.00 -12.80 357.13 6.53 -6.28 By element: Atomic # 1 Polarization: -6.54 SS G_CDS: 1.04 Total: -5.49 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 5.78 Total: 6.65 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -2.78 Total: -8.73 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: 2.49 Total: 1.30 kcal Total: -12.80 6.53 -6.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.307 kcal (2) G-P(sol) polarization free energy of solvation -12.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds