Wall clock time and date at job start Mon Mar 8 2021 07:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32605 * 1 3 3 C 1.47733 * 120.00273 * 2 1 4 4 C 1.39469 * 120.17369 * 245.50307 * 3 2 1 5 5 C 1.37999 * 119.90951 * 180.29291 * 4 3 2 6 6 C 1.50701 * 119.86965 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.46933 * 299.98078 * 6 5 4 8 8 Si 1.86298 * 109.47101 * 179.97438 * 6 5 4 9 9 H 1.48501 * 109.47299 * 59.99946 * 8 6 5 10 10 H 1.48499 * 109.46902 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47287 * 299.99880 * 8 6 5 12 12 C 1.38371 * 120.25838 * 359.96507 * 5 4 3 13 13 C 1.38239 * 120.35217 * 0.04072 * 12 5 4 14 14 C 1.38510 * 120.08014 * 359.97438 * 13 12 5 15 15 O 1.35827 * 120.12917 * 179.97438 * 14 13 12 16 16 C 1.42902 * 117.00054 * 0.02562 * 15 14 13 17 17 Si 1.86800 * 119.99979 * 180.02562 * 2 1 3 18 18 C 1.86301 * 109.47348 * 239.99858 * 17 2 1 19 19 C 1.86298 * 109.47131 * 359.97438 * 17 2 1 20 20 C 1.86304 * 109.47464 * 119.99820 * 17 2 1 21 21 H 1.07997 * 120.00106 * 185.16971 * 1 2 3 22 22 H 1.07998 * 119.99970 * 5.17246 * 1 2 3 23 23 H 1.07994 * 120.04648 * 0.26083 * 4 3 2 24 24 H 1.08996 * 109.47135 * 59.98096 * 6 5 4 25 25 H 0.96695 * 114.00703 * 299.99934 * 7 6 5 26 26 H 1.08010 * 119.82365 * 180.02562 * 12 5 4 27 27 H 1.07999 * 119.96258 * 179.97438 * 13 12 5 28 28 H 1.09005 * 109.46854 * 60.00288 * 16 15 14 29 29 H 1.08999 * 109.47578 * 179.97438 * 16 15 14 30 30 H 1.09000 * 109.47510 * 300.00047 * 16 15 14 31 31 H 1.09005 * 109.46959 * 59.99760 * 18 17 2 32 32 H 1.08996 * 109.47049 * 179.97438 * 18 17 2 33 33 H 1.08998 * 109.47335 * 300.00212 * 18 17 2 34 34 H 1.09008 * 109.47165 * 60.00268 * 19 17 2 35 35 H 1.08996 * 109.47499 * 179.97438 * 19 17 2 36 36 H 1.08997 * 109.47385 * 300.00106 * 19 17 2 37 37 H 1.09007 * 109.46857 * 60.00059 * 20 17 2 38 38 H 1.08996 * 109.47395 * 180.02562 * 20 17 2 39 39 H 1.09003 * 109.46847 * 300.00282 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0648 1.2794 0.0000 4 6 2.8483 1.6364 -1.0972 5 6 3.5408 2.8300 -1.0889 6 6 4.3876 3.2147 -2.2746 7 8 5.4008 2.2275 -2.4767 8 14 5.1856 4.8680 -1.9576 9 1 6.0404 4.7810 -0.7464 10 1 6.0195 5.2473 -3.1264 11 1 4.1326 5.8939 -1.7477 12 6 3.4607 3.6751 0.0039 13 6 2.6874 3.3318 1.0972 14 6 1.9866 2.1371 1.1042 15 8 1.2269 1.7986 2.1780 16 6 1.1953 2.7227 3.2676 17 14 2.2600 -1.6177 -0.0007 18 6 3.3312 -1.7172 1.5203 19 6 1.0494 -3.0338 -0.0006 20 6 3.3311 -1.7159 -1.5219 21 1 -0.5400 -0.9315 0.0843 22 1 -0.5400 0.9315 -0.0843 23 1 2.9133 0.9795 -1.9519 24 1 3.7602 3.2787 -3.1636 25 1 5.9976 2.1164 -1.7240 26 1 4.0053 4.6078 0.0028 27 1 2.6297 3.9959 1.9469 28 1 0.8033 3.6792 2.9214 29 1 0.5534 2.3319 4.0571 30 1 2.2044 2.8624 3.6551 31 1 2.7045 -1.6598 2.4104 32 1 3.8758 -2.6613 1.5201 33 1 4.0395 -0.8887 1.5207 34 1 0.4224 -2.9758 -0.8904 35 1 1.5943 -3.9777 -0.0015 36 1 0.4231 -2.9762 0.8896 37 1 4.0395 -0.8874 -1.5216 38 1 3.8758 -2.6600 -1.5226 39 1 2.7044 -1.6577 -2.4119 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:57:54 Heat of formation + Delta-G solvation = -72.833849 kcal Electronic energy + Delta-G solvation = -18734.101670 eV Core-core repulsion = 15958.809114 eV Total energy + Delta-G solvation = -2775.292557 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.125 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.22567 -39.03765 -37.19349 -34.92032 -31.65740 -30.81629 -29.45416 -28.64175 -28.31788 -28.18134 -26.04819 -24.08082 -22.48037 -20.33365 -18.88752 -18.19625 -17.22215 -16.75055 -16.46775 -16.06010 -15.74922 -15.40375 -15.05035 -14.65818 -14.46487 -14.10371 -13.93663 -13.75797 -13.59977 -13.39677 -13.29195 -13.22890 -13.05158 -12.98137 -12.84948 -12.26845 -12.22659 -12.01718 -11.99109 -11.59147 -11.14414 -10.88324 -10.81479 -10.37719 -10.15750 -9.59202 -8.90646 0.23464 0.41537 1.16058 1.21845 1.43774 1.51650 1.83763 1.92100 1.95191 2.20333 2.35340 2.62099 2.83017 3.51585 3.72248 3.81485 3.96477 4.11745 4.20583 4.24763 4.42760 4.55563 4.60653 4.73955 4.74669 4.76311 4.83383 4.84048 4.86029 4.87206 4.88620 5.02907 5.23356 5.27396 5.44821 5.51156 5.59637 5.63040 5.66833 5.81727 5.92522 6.46991 6.59235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.363 4.363 3 C -0.064 4.064 4 C -0.054 4.054 5 C -0.155 4.155 6 C -0.074 4.074 7 O -0.539 6.539 8 Si 0.947 3.053 9 H -0.252 1.252 10 H -0.255 1.255 11 H -0.252 1.252 12 C -0.092 4.092 13 C -0.202 4.202 14 C 0.136 3.864 15 O -0.306 6.306 16 C 0.024 3.976 17 Si 1.049 2.951 18 C -0.445 4.445 19 C -0.449 4.449 20 C -0.448 4.448 21 H 0.104 0.896 22 H 0.090 0.910 23 H 0.138 0.862 24 H 0.117 0.883 25 H 0.376 0.624 26 H 0.120 0.880 27 H 0.130 0.870 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.315 0.386 1.779 1.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.404 4.404 3 C -0.064 4.064 4 C -0.072 4.072 5 C -0.156 4.156 6 C -0.185 4.185 7 O -0.344 6.344 8 Si 0.771 3.229 9 H -0.176 1.176 10 H -0.179 1.179 11 H -0.176 1.176 12 C -0.110 4.110 13 C -0.221 4.221 14 C 0.090 3.910 15 O -0.219 6.219 16 C -0.071 4.071 17 Si 1.240 2.760 18 C -0.552 4.552 19 C -0.557 4.557 20 C -0.556 4.556 21 H 0.122 0.878 22 H 0.108 0.892 23 H 0.156 0.844 24 H 0.135 0.865 25 H 0.223 0.777 26 H 0.138 0.862 27 H 0.148 0.852 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.380 1.038 1.400 1.784 hybrid contribution -0.046 0.220 0.744 0.777 sum -0.426 1.258 2.144 2.522 Atomic orbital electron populations 1.24202 0.95478 1.01576 0.94353 1.27683 1.00752 1.07310 1.04664 1.18327 1.00908 0.94749 0.92464 1.20991 0.93533 0.95637 0.97067 1.20104 1.02174 0.96646 0.96638 1.24875 0.92177 1.02303 0.99162 1.86508 1.43952 1.59987 1.43907 0.85729 0.80449 0.75994 0.80766 1.17591 1.17854 1.17617 1.20808 0.98375 0.98783 0.93021 1.21101 1.02491 0.97674 1.00794 1.19117 0.91507 0.92724 0.87654 1.86113 1.64385 1.46220 1.25160 1.23108 1.02430 0.93414 0.88169 0.78368 0.66314 0.63477 0.67816 1.26061 1.09689 1.04162 1.15327 1.26150 1.11375 1.13697 1.04506 1.26143 1.09797 1.04724 1.14887 0.87758 0.89201 0.84377 0.86542 0.77728 0.86229 0.85191 0.92650 0.88060 0.92575 0.91253 0.91307 0.91367 0.91082 0.90928 0.91123 0.90695 0.91113 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.09 13.29 28.83 0.38 0.29 16 2 C -0.36 -0.33 3.83 -37.61 -0.14 -0.47 16 3 C -0.06 -0.13 4.91 -104.89 -0.52 -0.65 16 4 C -0.05 -0.08 8.75 -39.21 -0.34 -0.42 16 5 C -0.16 -0.16 5.39 -104.66 -0.56 -0.73 16 6 C -0.07 0.00 2.82 36.01 0.10 0.10 16 7 O -0.54 -0.22 12.76 -35.23 -0.45 -0.67 16 8 Si 0.95 -0.18 25.06 -169.99 -4.26 -4.44 16 9 H -0.25 0.01 7.11 56.52 0.40 0.41 16 10 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 11 H -0.25 -0.10 7.11 56.52 0.40 0.30 16 12 C -0.09 -0.10 8.66 -39.53 -0.34 -0.44 16 13 C -0.20 -0.26 9.03 -39.48 -0.36 -0.62 16 14 C 0.14 0.32 6.65 -38.81 -0.26 0.06 16 15 O -0.31 -0.63 9.69 -19.20 -0.19 -0.82 16 16 C 0.02 -0.03 9.81 101.05 0.99 0.96 16 17 Si 1.05 -1.11 12.33 -169.99 -2.10 -3.21 16 18 C -0.44 -0.05 8.65 101.05 0.87 0.82 16 19 C -0.45 0.41 7.88 101.05 0.80 1.21 16 20 C -0.45 0.25 8.20 101.05 0.83 1.08 16 21 H 0.10 -0.09 7.07 -52.49 -0.37 -0.46 16 22 H 0.09 0.13 8.05 -52.49 -0.42 -0.30 16 23 H 0.14 0.09 7.07 -52.49 -0.37 -0.28 16 24 H 0.12 -0.09 7.96 -51.93 -0.41 -0.50 16 25 H 0.38 -1.00 8.70 45.56 0.40 -0.60 16 26 H 0.12 -0.03 4.85 -52.48 -0.25 -0.29 16 27 H 0.13 -0.08 6.30 -52.49 -0.33 -0.41 16 28 H 0.05 -0.10 7.66 -51.93 -0.40 -0.50 16 29 H 0.10 -0.27 8.14 -51.93 -0.42 -0.69 16 30 H 0.06 -0.11 7.66 -51.93 -0.40 -0.51 16 31 H 0.07 0.04 7.96 -51.93 -0.41 -0.38 16 32 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 33 H 0.07 0.05 7.96 -51.93 -0.41 -0.37 16 34 H 0.07 -0.08 7.96 -51.92 -0.41 -0.49 16 35 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 36 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 37 H 0.07 -0.01 7.23 -51.93 -0.38 -0.39 16 38 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 39 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 LS Contribution 323.44 15.07 4.87 4.87 Total: 0.00 -4.64 323.44 -6.13 -10.77 By element: Atomic # 1 Polarization: -2.24 SS G_CDS: -5.46 Total: -7.70 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 1.45 Total: 1.20 kcal Atomic # 8 Polarization: -0.86 SS G_CDS: -0.64 Total: -1.49 kcal Atomic # 14 Polarization: -1.29 SS G_CDS: -6.36 Total: -7.65 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -4.64 -6.13 -10.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.067 kcal (2) G-P(sol) polarization free energy of solvation -4.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds