Wall clock time and date at job start Mon Mar 8 2021 07:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32605 * 1 3 3 C 1.47733 * 120.00273 * 2 1 4 4 C 1.39469 * 120.17369 * 245.50307 * 3 2 1 5 5 C 1.37999 * 119.90951 * 180.29291 * 4 3 2 6 6 C 1.50701 * 119.86965 * 179.97438 * 5 4 3 7 7 O 1.42898 * 109.46933 * 299.98078 * 6 5 4 8 8 Si 1.86298 * 109.47101 * 179.97438 * 6 5 4 9 9 H 1.48501 * 109.47299 * 59.99946 * 8 6 5 10 10 H 1.48499 * 109.46902 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47287 * 299.99880 * 8 6 5 12 12 C 1.38371 * 120.25838 * 359.96507 * 5 4 3 13 13 C 1.38239 * 120.35217 * 0.04072 * 12 5 4 14 14 C 1.38510 * 120.08014 * 359.97438 * 13 12 5 15 15 O 1.35827 * 120.12917 * 179.97438 * 14 13 12 16 16 C 1.42902 * 117.00054 * 0.02562 * 15 14 13 17 17 Si 1.86800 * 119.99979 * 180.02562 * 2 1 3 18 18 C 1.86301 * 109.47348 * 239.99858 * 17 2 1 19 19 C 1.86298 * 109.47131 * 359.97438 * 17 2 1 20 20 C 1.86304 * 109.47464 * 119.99820 * 17 2 1 21 21 H 1.07997 * 120.00106 * 185.16971 * 1 2 3 22 22 H 1.07998 * 119.99970 * 5.17246 * 1 2 3 23 23 H 1.07994 * 120.04648 * 0.26083 * 4 3 2 24 24 H 1.08996 * 109.47135 * 59.98096 * 6 5 4 25 25 H 0.96695 * 114.00703 * 299.99934 * 7 6 5 26 26 H 1.08010 * 119.82365 * 180.02562 * 12 5 4 27 27 H 1.07999 * 119.96258 * 179.97438 * 13 12 5 28 28 H 1.09005 * 109.46854 * 60.00288 * 16 15 14 29 29 H 1.08999 * 109.47578 * 179.97438 * 16 15 14 30 30 H 1.09000 * 109.47510 * 300.00047 * 16 15 14 31 31 H 1.09005 * 109.46959 * 59.99760 * 18 17 2 32 32 H 1.08996 * 109.47049 * 179.97438 * 18 17 2 33 33 H 1.08998 * 109.47335 * 300.00212 * 18 17 2 34 34 H 1.09008 * 109.47165 * 60.00268 * 19 17 2 35 35 H 1.08996 * 109.47499 * 179.97438 * 19 17 2 36 36 H 1.08997 * 109.47385 * 300.00106 * 19 17 2 37 37 H 1.09007 * 109.46857 * 60.00059 * 20 17 2 38 38 H 1.08996 * 109.47395 * 180.02562 * 20 17 2 39 39 H 1.09003 * 109.46847 * 300.00282 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0648 1.2794 0.0000 4 6 2.8483 1.6364 -1.0972 5 6 3.5408 2.8300 -1.0889 6 6 4.3876 3.2147 -2.2746 7 8 5.4008 2.2275 -2.4767 8 14 5.1856 4.8680 -1.9576 9 1 6.0404 4.7810 -0.7464 10 1 6.0195 5.2473 -3.1264 11 1 4.1326 5.8939 -1.7477 12 6 3.4607 3.6751 0.0039 13 6 2.6874 3.3318 1.0972 14 6 1.9866 2.1371 1.1042 15 8 1.2269 1.7986 2.1780 16 6 1.1953 2.7227 3.2676 17 14 2.2600 -1.6177 -0.0007 18 6 3.3312 -1.7172 1.5203 19 6 1.0494 -3.0338 -0.0006 20 6 3.3311 -1.7159 -1.5219 21 1 -0.5400 -0.9315 0.0843 22 1 -0.5400 0.9315 -0.0843 23 1 2.9133 0.9795 -1.9519 24 1 3.7602 3.2787 -3.1636 25 1 5.9976 2.1164 -1.7240 26 1 4.0053 4.6078 0.0028 27 1 2.6297 3.9959 1.9469 28 1 0.8033 3.6792 2.9214 29 1 0.5534 2.3319 4.0571 30 1 2.2044 2.8624 3.6551 31 1 2.7045 -1.6598 2.4104 32 1 3.8758 -2.6613 1.5201 33 1 4.0395 -0.8887 1.5207 34 1 0.4224 -2.9758 -0.8904 35 1 1.5943 -3.9777 -0.0015 36 1 0.4231 -2.9762 0.8896 37 1 4.0395 -0.8874 -1.5216 38 1 3.8758 -2.6600 -1.5226 39 1 2.7044 -1.6577 -2.4119 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 07:57:53 Heat of formation + Delta-G solvation = -64.782461 kcal Electronic energy + Delta-G solvation = -18733.752536 eV Core-core repulsion = 15958.809114 eV Total energy + Delta-G solvation = -2774.943422 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.125 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26857 -39.06637 -37.20958 -34.94944 -31.70258 -30.84594 -29.40919 -28.58075 -28.28727 -28.11574 -26.06298 -24.12716 -22.51876 -20.36893 -18.92267 -18.20911 -17.26091 -16.76234 -16.48399 -16.05262 -15.76872 -15.42024 -15.06528 -14.66379 -14.47907 -14.06091 -13.87162 -13.75523 -13.60300 -13.38487 -13.28392 -13.16051 -13.01800 -12.95238 -12.79798 -12.27481 -12.23800 -12.02752 -11.99478 -11.61718 -11.12842 -10.89974 -10.75677 -10.38107 -10.17816 -9.65106 -8.97084 0.16742 0.33984 1.15575 1.21304 1.44373 1.50602 1.87486 1.90343 2.04351 2.24811 2.37058 2.62338 2.79680 3.57321 3.69854 3.80429 3.94934 4.17919 4.24688 4.34320 4.42927 4.60064 4.69768 4.73059 4.80259 4.82006 4.83052 4.87346 4.88475 4.90218 4.92026 4.99718 5.17585 5.22273 5.39350 5.55620 5.58044 5.65198 5.70740 5.77196 5.90493 6.43893 6.73574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.376 4.376 3 C -0.077 4.077 4 C -0.063 4.063 5 C -0.157 4.157 6 C -0.073 4.073 7 O -0.551 6.551 8 Si 0.979 3.021 9 H -0.252 1.252 10 H -0.275 1.275 11 H -0.260 1.260 12 C -0.101 4.101 13 C -0.207 4.207 14 C 0.119 3.881 15 O -0.323 6.323 16 C 0.016 3.984 17 Si 1.099 2.901 18 C -0.458 4.458 19 C -0.456 4.456 20 C -0.456 4.456 21 H 0.120 0.880 22 H 0.077 0.923 23 H 0.143 0.857 24 H 0.122 0.878 25 H 0.388 0.612 26 H 0.132 0.868 27 H 0.146 0.854 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.263 0.146 1.895 1.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.416 4.416 3 C -0.077 4.077 4 C -0.081 4.081 5 C -0.158 4.158 6 C -0.184 4.184 7 O -0.358 6.358 8 Si 0.804 3.196 9 H -0.176 1.176 10 H -0.200 1.200 11 H -0.184 1.184 12 C -0.119 4.119 13 C -0.226 4.226 14 C 0.073 3.927 15 O -0.237 6.237 16 C -0.078 4.078 17 Si 1.287 2.713 18 C -0.564 4.564 19 C -0.564 4.564 20 C -0.563 4.563 21 H 0.138 0.862 22 H 0.096 0.904 23 H 0.161 0.839 24 H 0.140 0.860 25 H 0.237 0.763 26 H 0.149 0.851 27 H 0.164 0.836 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.324 0.809 1.538 1.768 hybrid contribution -0.052 0.322 0.732 0.802 sum -0.376 1.130 2.270 2.564 Atomic orbital electron populations 1.24301 0.95572 1.01789 0.94634 1.28125 1.01061 1.07975 1.04394 1.18580 1.01164 0.95314 0.92687 1.21110 0.93759 0.96038 0.97182 1.20258 1.02043 0.96501 0.96977 1.24922 0.92129 1.02310 0.99024 1.86476 1.44278 1.60115 1.44916 0.85278 0.79465 0.75220 0.79644 1.17567 1.20021 1.18395 1.21008 0.98574 0.99307 0.93008 1.21337 1.02162 0.97664 1.01429 1.19323 0.92081 0.93274 0.88030 1.86080 1.64499 1.47372 1.25712 1.23319 1.03325 0.93444 0.87721 0.77615 0.65165 0.62055 0.66426 1.26231 1.09930 1.04114 1.16097 1.26202 1.11542 1.13833 1.04790 1.26234 1.09969 1.04772 1.15351 0.86161 0.90437 0.83926 0.86013 0.76319 0.85064 0.83647 0.91978 0.86744 0.91812 0.91772 0.90747 0.92188 0.90646 0.90504 0.91023 0.91151 0.90673 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.27 13.29 66.66 0.89 0.62 16 2 C -0.38 -0.91 3.83 23.62 0.09 -0.82 16 3 C -0.08 -0.38 4.91 -20.04 -0.10 -0.48 16 4 C -0.06 -0.23 8.75 22.51 0.20 -0.03 16 5 C -0.16 -0.38 5.39 -19.89 -0.11 -0.49 16 6 C -0.07 0.00 2.82 71.24 0.20 0.20 16 7 O -0.55 -0.46 12.76 -148.98 -1.90 -2.36 16 8 Si 0.98 -0.39 25.06 68.60 1.72 1.33 16 9 H -0.25 0.14 7.11 99.48 0.71 0.85 16 10 H -0.27 -0.81 7.11 99.48 0.71 -0.10 16 11 H -0.26 -0.19 7.11 99.48 0.71 0.52 16 12 C -0.10 -0.23 8.66 22.30 0.19 -0.04 16 13 C -0.21 -0.61 9.03 22.33 0.20 -0.41 16 14 C 0.12 0.65 6.65 22.77 0.15 0.80 16 15 O -0.32 -1.58 9.69 -91.60 -0.89 -2.47 16 16 C 0.02 -0.04 9.81 113.37 1.11 1.08 16 17 Si 1.10 -2.29 12.33 68.60 0.85 -1.44 16 18 C -0.46 -0.30 8.65 113.37 0.98 0.68 16 19 C -0.46 1.12 7.88 113.37 0.89 2.02 16 20 C -0.46 0.55 8.20 113.37 0.93 1.48 16 21 H 0.12 -0.21 7.07 -2.91 -0.02 -0.23 16 22 H 0.08 0.32 8.05 -2.91 -0.02 0.30 16 23 H 0.14 0.27 7.07 -2.91 -0.02 0.25 16 24 H 0.12 -0.17 7.96 -2.39 -0.02 -0.19 16 25 H 0.39 -2.06 8.70 -74.06 -0.64 -2.71 16 26 H 0.13 -0.11 4.85 -2.91 -0.01 -0.12 16 27 H 0.15 -0.19 6.30 -2.91 -0.02 -0.21 16 28 H 0.06 -0.23 7.66 -2.38 -0.02 -0.25 16 29 H 0.11 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H 0.06 -0.25 7.66 -2.39 -0.02 -0.27 16 31 H 0.06 0.10 7.96 -2.38 -0.02 0.09 16 32 H 0.07 -0.05 7.96 -2.39 -0.02 -0.07 16 33 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 34 H 0.07 -0.23 7.96 -2.38 -0.02 -0.25 16 35 H 0.08 -0.23 7.96 -2.39 -0.02 -0.25 16 36 H 0.07 -0.17 7.96 -2.39 -0.02 -0.19 16 37 H 0.07 -0.01 7.23 -2.38 -0.02 -0.02 16 38 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 39 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 Total: 0.00 -10.54 323.44 6.54 -4.00 By element: Atomic # 1 Polarization: -4.80 SS G_CDS: 1.14 Total: -3.67 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 5.63 Total: 4.60 kcal Atomic # 8 Polarization: -2.04 SS G_CDS: -2.79 Total: -4.83 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: 2.56 Total: -0.11 kcal Total: -10.54 6.54 -4.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.782 kcal (2) G-P(sol) polarization free energy of solvation -10.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds