Wall clock time and date at job start Mon Mar 8 2021 08:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32597 * 1 3 3 C 1.47772 * 119.99793 * 2 1 4 4 C 1.39523 * 120.06448 * 294.34343 * 3 2 1 5 5 C 1.50698 * 120.00056 * 0.02820 * 4 3 2 6 6 O 1.42894 * 109.47200 * 284.66525 * 5 4 3 7 7 Si 1.86302 * 109.47090 * 164.66372 * 5 4 3 8 8 H 1.48507 * 109.46861 * 60.00637 * 7 5 4 9 9 H 1.48503 * 109.47087 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47426 * 300.00512 * 7 5 4 11 11 C 1.37999 * 120.00207 * 180.02562 * 4 3 2 12 12 C 1.38652 * 120.13946 * 359.70503 * 11 4 3 13 13 O 1.35958 * 119.92914 * 180.29693 * 12 11 4 14 14 C 1.42906 * 116.99720 * 0.25507 * 13 12 11 15 15 C 1.39319 * 120.13781 * 0.55168 * 12 11 4 16 16 O 1.36003 * 119.99819 * 179.74303 * 15 12 11 17 17 C 1.42905 * 116.99546 * 179.72632 * 16 15 12 18 18 C 1.38233 * 119.99520 * 359.47129 * 15 12 11 19 19 Si 1.86799 * 119.99791 * 179.97438 * 2 1 3 20 20 C 1.86298 * 109.47227 * 265.12937 * 19 2 1 21 21 C 1.86292 * 109.47386 * 25.13319 * 19 2 1 22 22 C 1.86303 * 109.46927 * 145.13260 * 19 2 1 23 23 H 1.08002 * 120.00368 * 184.96329 * 1 2 3 24 24 H 1.07995 * 120.00154 * 4.96796 * 1 2 3 25 25 H 1.09003 * 109.46911 * 44.66768 * 5 4 3 26 26 H 0.96699 * 114.00241 * 299.99895 * 6 5 4 27 27 H 1.07999 * 119.92360 * 179.97438 * 11 4 3 28 28 H 1.08995 * 109.47294 * 299.99909 * 14 13 12 29 29 H 1.08992 * 109.47141 * 60.00401 * 14 13 12 30 30 H 1.09006 * 109.46687 * 180.02562 * 14 13 12 31 31 H 1.08997 * 109.47091 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.46905 * 60.00038 * 17 16 15 33 33 H 1.08997 * 109.46889 * 300.00338 * 17 16 15 34 34 H 1.08006 * 120.07020 * 180.22667 * 18 15 12 35 35 H 1.09002 * 109.47190 * 60.00533 * 20 19 2 36 36 H 1.09005 * 109.47441 * 180.02562 * 20 19 2 37 37 H 1.09003 * 109.47399 * 300.00489 * 20 19 2 38 38 H 1.09006 * 109.47467 * 59.99942 * 21 19 2 39 39 H 1.08996 * 109.47621 * 179.97438 * 21 19 2 40 40 H 1.09002 * 109.47079 * 299.99497 * 21 19 2 41 41 H 1.08999 * 109.46950 * 64.97632 * 22 19 2 42 42 H 1.08996 * 109.47223 * 184.97574 * 22 19 2 43 43 H 1.08999 * 109.46941 * 304.97406 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0648 1.2798 0.0000 4 6 1.9832 2.1340 -1.1002 5 6 1.1405 1.7521 -2.2897 6 8 1.8150 0.7463 -3.0482 7 14 0.8593 3.2519 -3.3586 8 1 2.1667 3.7782 -3.8268 9 1 0.0294 2.8755 -4.5312 10 1 0.1584 4.2972 -2.5705 11 6 2.6741 3.3286 -1.0990 12 6 3.4454 3.6856 -0.0035 13 8 4.1195 4.8663 -0.0045 14 6 3.9828 5.6905 -1.1639 15 6 3.5353 2.8347 1.0959 16 8 4.2968 3.1854 2.1667 17 6 4.3385 2.2678 3.2615 18 6 2.8459 1.6365 1.1006 19 14 2.2599 -1.6178 0.0007 20 6 2.6996 -2.0802 1.7510 21 6 1.1933 -2.9509 -0.7446 22 6 3.8185 -1.4354 -1.0035 23 1 -0.5401 -0.9318 0.0809 24 1 -0.5400 0.9317 -0.0810 25 1 0.1809 1.3658 -1.9462 26 1 2.6781 1.0214 -3.3865 27 1 2.6104 3.9886 -1.9514 28 1 4.3404 5.1484 -2.0393 29 1 2.9338 5.9521 -1.3021 30 1 4.5704 6.5995 -1.0348 31 1 4.9793 2.6683 4.0470 32 1 4.7362 1.3122 2.9196 33 1 3.3316 2.1232 3.6528 34 1 2.9119 0.9776 1.9538 35 1 1.7877 -2.1870 2.3386 36 1 3.2449 -3.0241 1.7514 37 1 3.3236 -1.3002 2.1872 38 1 0.9361 -2.6804 -1.7688 39 1 1.7384 -3.8948 -0.7447 40 1 0.2815 -3.0577 -0.1571 41 1 4.4815 -0.7191 -0.5184 42 1 4.3184 -2.4012 -1.0770 43 1 3.5673 -1.0794 -2.0026 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:01:05 Heat of formation + Delta-G solvation = -102.742055 kcal Electronic energy + Delta-G solvation = -23211.968504 eV Core-core repulsion = 19961.159219 eV Total energy + Delta-G solvation = -3250.809285 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.64276 -39.39419 -39.09943 -36.93326 -34.29741 -32.02648 -30.48171 -29.49179 -28.54993 -28.38123 -28.21858 -28.09438 -26.18546 -23.47351 -22.54257 -20.80518 -19.21736 -18.33400 -17.79195 -17.40652 -17.00301 -16.30265 -16.17152 -16.11456 -15.86359 -15.51090 -15.03204 -14.73936 -14.30799 -14.13157 -14.09793 -13.87003 -13.74542 -13.49583 -13.31905 -13.29729 -13.15831 -13.06405 -13.00573 -12.74723 -12.34659 -12.24704 -12.12379 -12.06549 -11.88079 -11.61652 -11.12278 -10.81346 -10.76232 -10.34004 -10.10586 -9.60831 -8.57919 0.22900 0.30053 1.08748 1.15400 1.34621 1.47918 1.81037 1.87423 1.94232 2.17031 2.32265 2.33902 2.57616 2.77946 3.52372 3.65411 3.81004 3.89563 4.10855 4.16724 4.22046 4.26711 4.35296 4.38107 4.51784 4.57297 4.62191 4.68412 4.71826 4.72885 4.75551 4.78227 4.85107 4.88506 4.92448 5.02207 5.05208 5.42268 5.46284 5.53065 5.58211 5.65137 5.69482 5.84908 6.09994 6.58522 6.62870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.357 4.357 3 C 0.002 3.998 4 C -0.117 4.117 5 C -0.072 4.072 6 O -0.531 6.531 7 Si 0.934 3.066 8 H -0.252 1.252 9 H -0.250 1.250 10 H -0.249 1.249 11 C -0.177 4.177 12 C 0.098 3.902 13 O -0.304 6.304 14 C 0.023 3.977 15 C 0.112 3.888 16 O -0.305 6.305 17 C 0.024 3.976 18 C -0.174 4.174 19 Si 1.054 2.946 20 C -0.451 4.451 21 C -0.448 4.448 22 C -0.444 4.444 23 H 0.106 0.894 24 H 0.093 0.907 25 H 0.119 0.881 26 H 0.373 0.627 27 H 0.134 0.866 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.141 0.859 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.331 -0.993 0.059 1.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.398 4.398 3 C 0.001 3.999 4 C -0.118 4.118 5 C -0.183 4.183 6 O -0.336 6.336 7 Si 0.758 3.242 8 H -0.177 1.177 9 H -0.174 1.174 10 H -0.172 1.172 11 C -0.196 4.196 12 C 0.052 3.948 13 O -0.218 6.218 14 C -0.072 4.072 15 C 0.067 3.933 16 O -0.218 6.218 17 C -0.072 4.072 18 C -0.192 4.192 19 Si 1.245 2.755 20 C -0.558 4.558 21 C -0.556 4.556 22 C -0.552 4.552 23 H 0.124 0.876 24 H 0.111 0.889 25 H 0.137 0.863 26 H 0.220 0.780 27 H 0.151 0.849 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.158 0.842 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.808 -0.268 -0.129 0.861 hybrid contribution 0.321 0.040 0.059 0.329 sum -0.486 -0.228 -0.070 0.542 Atomic orbital electron populations 1.24205 0.95393 1.01752 0.95490 1.27798 1.00835 1.07648 1.03564 1.18417 0.95997 0.93495 0.91989 1.19991 1.00596 0.94097 0.97135 1.24902 0.98166 1.01556 0.93669 1.86515 1.36243 1.39975 1.70831 0.85935 0.81279 0.76960 0.80057 1.17658 1.17390 1.17228 1.20927 1.01380 0.98868 0.98388 1.18154 0.96428 0.87096 0.93093 1.86185 1.66459 1.28037 1.41092 1.23126 1.02189 0.94604 0.87289 1.18165 0.94828 0.93016 0.87335 1.86199 1.64500 1.46079 1.25062 1.23132 1.02463 0.93605 0.87953 1.21142 1.01034 0.96506 1.00567 0.78286 0.66609 0.63424 0.67189 1.26177 1.05303 1.05358 1.18934 1.26131 1.09557 1.12382 1.07514 1.26046 1.15149 1.04179 1.09804 0.87622 0.88887 0.86328 0.77986 0.84893 0.92667 0.92788 0.87785 0.87953 0.92465 0.92526 0.84173 0.91153 0.91015 0.91472 0.90687 0.91098 0.91358 0.91531 0.91482 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.08 12.07 28.83 0.35 0.43 16 2 C -0.36 0.04 3.52 -37.59 -0.13 -0.09 16 3 C 0.00 0.00 4.90 -105.01 -0.51 -0.51 16 4 C -0.12 -0.15 5.27 -104.23 -0.55 -0.70 16 5 C -0.07 -0.01 2.11 36.00 0.08 0.07 16 6 O -0.53 0.04 12.83 -35.23 -0.45 -0.42 16 7 Si 0.93 -0.05 25.51 -169.99 -4.34 -4.38 16 8 H -0.25 0.11 6.72 56.52 0.38 0.49 16 9 H -0.25 -0.28 7.11 56.52 0.40 0.12 16 10 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 11 C -0.18 -0.32 7.64 -39.52 -0.30 -0.62 16 12 C 0.10 0.35 6.70 -39.03 -0.26 0.08 16 13 O -0.30 -1.17 10.27 -34.27 -0.35 -1.52 16 14 C 0.02 0.00 9.81 101.05 0.99 0.99 16 15 C 0.11 0.38 6.69 -39.18 -0.26 0.12 16 16 O -0.31 -1.09 10.28 -34.41 -0.35 -1.44 16 17 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 18 C -0.17 -0.27 8.40 -39.08 -0.33 -0.60 16 19 Si 1.05 -1.61 12.17 -169.99 -2.07 -3.68 16 20 C -0.45 0.60 8.65 101.05 0.87 1.48 16 21 C -0.45 0.43 8.43 101.05 0.85 1.28 16 22 C -0.44 0.16 8.65 101.05 0.87 1.03 16 23 H 0.11 -0.22 7.19 -52.49 -0.38 -0.60 16 24 H 0.09 -0.06 7.44 -52.49 -0.39 -0.46 16 25 H 0.12 -0.04 5.60 -51.93 -0.29 -0.33 16 26 H 0.37 -1.05 8.70 45.56 0.40 -0.66 16 27 H 0.13 0.05 3.10 -52.49 -0.16 -0.12 16 28 H 0.05 -0.06 7.64 -51.93 -0.40 -0.46 16 29 H 0.05 -0.05 7.67 -51.93 -0.40 -0.45 16 30 H 0.10 -0.18 8.14 -51.93 -0.42 -0.60 16 31 H 0.10 -0.20 8.14 -51.93 -0.42 -0.63 16 32 H 0.06 -0.10 7.66 -51.93 -0.40 -0.50 16 33 H 0.06 -0.08 7.66 -51.93 -0.40 -0.48 16 34 H 0.14 -0.06 6.01 -52.48 -0.32 -0.38 16 35 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 36 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 37 H 0.07 -0.10 7.69 -51.93 -0.40 -0.50 16 38 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 39 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 40 H 0.07 -0.09 7.62 -51.93 -0.40 -0.49 16 41 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 42 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 43 H 0.08 0.00 7.96 -51.93 -0.41 -0.42 16 LS Contribution 350.65 15.07 5.28 5.28 Total: 0.00 -5.58 350.65 -5.70 -11.28 By element: Atomic # 1 Polarization: -2.98 SS G_CDS: -6.08 Total: -9.06 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 2.66 Total: 3.93 kcal Atomic # 8 Polarization: -2.22 SS G_CDS: -1.16 Total: -3.38 kcal Atomic # 14 Polarization: -1.66 SS G_CDS: -6.40 Total: -8.06 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -5.58 -5.70 -11.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.460 kcal (2) G-P(sol) polarization free energy of solvation -5.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds