Wall clock time and date at job start Mon Mar 8 2021 08:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32597 * 1 3 3 C 1.47772 * 119.99793 * 2 1 4 4 C 1.39523 * 120.06448 * 294.34343 * 3 2 1 5 5 C 1.50698 * 120.00056 * 0.02820 * 4 3 2 6 6 O 1.42894 * 109.47200 * 284.66525 * 5 4 3 7 7 Si 1.86302 * 109.47090 * 164.66372 * 5 4 3 8 8 H 1.48507 * 109.46861 * 60.00637 * 7 5 4 9 9 H 1.48503 * 109.47087 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47426 * 300.00512 * 7 5 4 11 11 C 1.37999 * 120.00207 * 180.02562 * 4 3 2 12 12 C 1.38652 * 120.13946 * 359.70503 * 11 4 3 13 13 O 1.35958 * 119.92914 * 180.29693 * 12 11 4 14 14 C 1.42906 * 116.99720 * 0.25507 * 13 12 11 15 15 C 1.39319 * 120.13781 * 0.55168 * 12 11 4 16 16 O 1.36003 * 119.99819 * 179.74303 * 15 12 11 17 17 C 1.42905 * 116.99546 * 179.72632 * 16 15 12 18 18 C 1.38233 * 119.99520 * 359.47129 * 15 12 11 19 19 Si 1.86799 * 119.99791 * 179.97438 * 2 1 3 20 20 C 1.86298 * 109.47227 * 265.12937 * 19 2 1 21 21 C 1.86292 * 109.47386 * 25.13319 * 19 2 1 22 22 C 1.86303 * 109.46927 * 145.13260 * 19 2 1 23 23 H 1.08002 * 120.00368 * 184.96329 * 1 2 3 24 24 H 1.07995 * 120.00154 * 4.96796 * 1 2 3 25 25 H 1.09003 * 109.46911 * 44.66768 * 5 4 3 26 26 H 0.96699 * 114.00241 * 299.99895 * 6 5 4 27 27 H 1.07999 * 119.92360 * 179.97438 * 11 4 3 28 28 H 1.08995 * 109.47294 * 299.99909 * 14 13 12 29 29 H 1.08992 * 109.47141 * 60.00401 * 14 13 12 30 30 H 1.09006 * 109.46687 * 180.02562 * 14 13 12 31 31 H 1.08997 * 109.47091 * 180.02562 * 17 16 15 32 32 H 1.09002 * 109.46905 * 60.00038 * 17 16 15 33 33 H 1.08997 * 109.46889 * 300.00338 * 17 16 15 34 34 H 1.08006 * 120.07020 * 180.22667 * 18 15 12 35 35 H 1.09002 * 109.47190 * 60.00533 * 20 19 2 36 36 H 1.09005 * 109.47441 * 180.02562 * 20 19 2 37 37 H 1.09003 * 109.47399 * 300.00489 * 20 19 2 38 38 H 1.09006 * 109.47467 * 59.99942 * 21 19 2 39 39 H 1.08996 * 109.47621 * 179.97438 * 21 19 2 40 40 H 1.09002 * 109.47079 * 299.99497 * 21 19 2 41 41 H 1.08999 * 109.46950 * 64.97632 * 22 19 2 42 42 H 1.08996 * 109.47223 * 184.97574 * 22 19 2 43 43 H 1.08999 * 109.46941 * 304.97406 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0648 1.2798 0.0000 4 6 1.9832 2.1340 -1.1002 5 6 1.1405 1.7521 -2.2897 6 8 1.8150 0.7463 -3.0482 7 14 0.8593 3.2519 -3.3586 8 1 2.1667 3.7782 -3.8268 9 1 0.0294 2.8755 -4.5312 10 1 0.1584 4.2972 -2.5705 11 6 2.6741 3.3286 -1.0990 12 6 3.4454 3.6856 -0.0035 13 8 4.1195 4.8663 -0.0045 14 6 3.9828 5.6905 -1.1639 15 6 3.5353 2.8347 1.0959 16 8 4.2968 3.1854 2.1667 17 6 4.3385 2.2678 3.2615 18 6 2.8459 1.6365 1.1006 19 14 2.2599 -1.6178 0.0007 20 6 2.6996 -2.0802 1.7510 21 6 1.1933 -2.9509 -0.7446 22 6 3.8185 -1.4354 -1.0035 23 1 -0.5401 -0.9318 0.0809 24 1 -0.5400 0.9317 -0.0810 25 1 0.1809 1.3658 -1.9462 26 1 2.6781 1.0214 -3.3865 27 1 2.6104 3.9886 -1.9514 28 1 4.3404 5.1484 -2.0393 29 1 2.9338 5.9521 -1.3021 30 1 4.5704 6.5995 -1.0348 31 1 4.9793 2.6683 4.0470 32 1 4.7362 1.3122 2.9196 33 1 3.3316 2.1232 3.6528 34 1 2.9119 0.9776 1.9538 35 1 1.7877 -2.1870 2.3386 36 1 3.2449 -3.0241 1.7514 37 1 3.3236 -1.3002 2.1872 38 1 0.9361 -2.6804 -1.7688 39 1 1.7384 -3.8948 -0.7447 40 1 0.2815 -3.0577 -0.1571 41 1 4.4815 -0.7191 -0.5184 42 1 4.3184 -2.4012 -1.0770 43 1 3.5673 -1.0794 -2.0026 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:01:04 Heat of formation + Delta-G solvation = -95.972894 kcal Electronic energy + Delta-G solvation = -23211.674971 eV Core-core repulsion = 19961.159219 eV Total energy + Delta-G solvation = -3250.515752 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.73115 -39.49997 -39.15605 -36.94893 -34.30064 -32.09510 -30.49926 -29.39251 -28.53962 -28.26787 -28.17975 -28.05939 -26.21512 -23.52783 -22.59924 -20.82226 -19.28837 -18.38348 -17.86290 -17.43103 -17.08883 -16.35041 -16.21729 -16.12486 -15.87042 -15.52163 -14.99931 -14.77285 -14.33393 -14.07693 -14.01527 -13.80207 -13.65466 -13.48568 -13.30253 -13.19037 -13.10944 -12.98199 -12.91968 -12.72762 -12.34058 -12.28832 -12.14435 -12.09456 -11.91595 -11.64127 -11.04146 -10.74275 -10.72098 -10.34084 -10.05373 -9.68347 -8.69035 0.13573 0.20340 1.10673 1.18645 1.33896 1.45710 1.84444 1.90177 2.05756 2.26480 2.28790 2.31485 2.56161 2.80270 3.53427 3.63417 3.79421 3.86683 4.12915 4.20513 4.27470 4.32543 4.37072 4.37414 4.50281 4.63416 4.68096 4.72247 4.82609 4.85913 4.86323 4.90586 4.90893 4.94281 4.95083 4.96411 5.03273 5.39234 5.48628 5.58583 5.64654 5.69684 5.73235 5.89202 6.03906 6.54197 6.73132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.372 4.372 3 C -0.002 4.002 4 C -0.122 4.122 5 C -0.069 4.069 6 O -0.538 6.538 7 Si 0.957 3.043 8 H -0.246 1.246 9 H -0.266 1.266 10 H -0.261 1.261 11 C -0.178 4.178 12 C 0.074 3.926 13 O -0.330 6.330 14 C 0.014 3.986 15 C 0.093 3.907 16 O -0.331 6.331 17 C 0.015 3.985 18 C -0.174 4.174 19 Si 1.102 2.898 20 C -0.459 4.459 21 C -0.457 4.457 22 C -0.458 4.458 23 H 0.122 0.878 24 H 0.091 0.909 25 H 0.123 0.877 26 H 0.385 0.615 27 H 0.144 0.856 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.157 0.843 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 -1.790 0.117 1.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.412 4.412 3 C -0.002 4.002 4 C -0.123 4.123 5 C -0.180 4.180 6 O -0.345 6.345 7 Si 0.781 3.219 8 H -0.169 1.169 9 H -0.191 1.191 10 H -0.185 1.185 11 C -0.197 4.197 12 C 0.029 3.971 13 O -0.244 6.244 14 C -0.080 4.080 15 C 0.048 3.952 16 O -0.245 6.245 17 C -0.079 4.079 18 C -0.193 4.193 19 Si 1.290 2.710 20 C -0.566 4.566 21 C -0.564 4.564 22 C -0.564 4.564 23 H 0.140 0.860 24 H 0.109 0.891 25 H 0.141 0.859 26 H 0.233 0.767 27 H 0.161 0.839 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.175 0.825 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.177 -1.059 -0.082 1.585 hybrid contribution 0.435 0.287 0.027 0.522 sum -0.742 -0.771 -0.055 1.072 Atomic orbital electron populations 1.24401 0.95319 1.02520 0.94595 1.28066 1.01210 1.07573 1.04338 1.18660 0.95774 0.94007 0.91781 1.20190 1.00532 0.93949 0.97647 1.24901 0.98153 1.01693 0.93258 1.86487 1.37108 1.40111 1.70756 0.85621 0.80970 0.76336 0.78939 1.16946 1.19059 1.18503 1.21062 1.01041 0.99232 0.98317 1.18453 0.97328 0.87422 0.93921 1.86137 1.66942 1.28539 1.42775 1.23361 1.03072 0.94845 0.86733 1.18445 0.95476 0.93764 0.87542 1.86154 1.64826 1.47628 1.25899 1.23378 1.03476 0.93752 0.87340 1.21346 1.00572 0.96156 1.01214 0.77553 0.64986 0.62093 0.66416 1.26255 1.05643 1.05592 1.19134 1.26228 1.10110 1.12729 1.07351 1.26233 1.16204 1.04057 1.09939 0.85975 0.89086 0.85925 0.76659 0.83886 0.91761 0.92098 0.86335 0.86733 0.91313 0.91603 0.82544 0.90730 0.90816 0.91232 0.91247 0.90929 0.90678 0.92238 0.91258 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.27 12.07 66.66 0.80 1.07 16 2 C -0.37 0.27 3.52 23.64 0.08 0.35 16 3 C 0.00 0.00 4.90 -20.12 -0.10 -0.10 16 4 C -0.12 -0.36 5.27 -19.61 -0.10 -0.46 16 5 C -0.07 -0.01 2.11 71.24 0.15 0.14 16 6 O -0.54 0.18 12.83 -148.98 -1.91 -1.73 16 7 Si 0.96 0.02 25.51 68.60 1.75 1.77 16 8 H -0.25 0.31 6.72 99.48 0.67 0.98 16 9 H -0.27 -0.69 7.11 99.48 0.71 0.02 16 10 H -0.26 -0.50 7.11 99.48 0.71 0.20 16 11 C -0.18 -0.78 7.64 22.31 0.17 -0.61 16 12 C 0.07 0.62 6.70 22.63 0.15 0.78 16 13 O -0.33 -3.02 10.27 -79.06 -0.81 -3.83 16 14 C 0.01 0.01 9.81 113.37 1.11 1.12 16 15 C 0.09 0.74 6.69 22.53 0.15 0.89 16 16 O -0.33 -2.78 10.28 -79.57 -0.82 -3.60 16 17 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 18 C -0.17 -0.61 8.40 22.60 0.19 -0.42 16 19 Si 1.10 -4.05 12.17 68.60 0.83 -3.22 16 20 C -0.46 1.66 8.65 113.37 0.98 2.64 16 21 C -0.46 1.28 8.43 113.37 0.96 2.24 16 22 C -0.46 0.28 8.65 113.37 0.98 1.26 16 23 H 0.12 -0.68 7.19 -2.91 -0.02 -0.71 16 24 H 0.09 -0.17 7.44 -2.91 -0.02 -0.19 16 25 H 0.12 -0.11 5.60 -2.39 -0.01 -0.12 16 26 H 0.38 -2.22 8.70 -74.06 -0.64 -2.87 16 27 H 0.14 0.16 3.10 -2.91 -0.01 0.15 16 28 H 0.06 -0.11 7.64 -2.39 -0.02 -0.13 16 29 H 0.06 -0.07 7.67 -2.39 -0.02 -0.09 16 30 H 0.12 -0.37 8.14 -2.38 -0.02 -0.39 16 31 H 0.11 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H 0.07 -0.24 7.66 -2.39 -0.02 -0.25 16 33 H 0.07 -0.19 7.66 -2.39 -0.02 -0.21 16 34 H 0.16 -0.16 6.01 -2.91 -0.02 -0.18 16 35 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 36 H 0.07 -0.28 7.96 -2.38 -0.02 -0.30 16 37 H 0.07 -0.27 7.69 -2.39 -0.02 -0.29 16 38 H 0.07 -0.10 7.96 -2.38 -0.02 -0.12 16 39 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 40 H 0.07 -0.31 7.62 -2.39 -0.02 -0.33 16 41 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 42 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 43 H 0.07 0.02 7.96 -2.39 -0.02 0.00 16 Total: 0.00 -13.30 350.65 6.76 -6.55 By element: Atomic # 1 Polarization: -7.00 SS G_CDS: 1.07 Total: -5.92 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 6.64 Total: 9.98 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -3.54 Total: -9.16 kcal Atomic # 14 Polarization: -4.03 SS G_CDS: 2.58 Total: -1.45 kcal Total: -13.30 6.76 -6.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.426 kcal (2) G-P(sol) polarization free energy of solvation -13.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds