Wall clock time and date at job start Mon Mar 8 2021 08:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32595 * 1 3 3 C 1.47778 * 120.00095 * 2 1 4 4 C 1.39542 * 120.08147 * 245.71571 * 3 2 1 5 5 C 1.38279 * 119.91620 * 179.97438 * 4 3 2 6 6 C 1.39426 * 119.96677 * 0.02562 * 5 4 3 7 7 C 1.38716 * 120.05829 * 0.02562 * 6 5 4 8 8 C 1.37928 * 120.21320 * 359.73535 * 7 6 5 9 9 C 1.50692 * 119.99822 * 180.28275 * 8 7 6 10 10 O 1.42903 * 109.47160 * 255.08310 * 9 8 7 11 11 Si 1.86303 * 109.47600 * 15.08658 * 9 8 7 12 12 H 1.48496 * 109.46899 * 59.99606 * 11 9 8 13 13 H 1.48491 * 109.47521 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46695 * 300.00276 * 11 9 8 15 15 O 1.36522 * 108.58532 * 179.97438 * 6 5 4 16 16 C 1.43968 * 105.50220 * 342.67329 * 15 6 5 17 17 O 1.36524 * 131.41285 * 179.97438 * 5 4 3 18 18 Si 1.86802 * 120.00067 * 180.02562 * 2 1 3 19 19 C 1.86296 * 109.46927 * 359.97438 * 18 2 1 20 20 C 1.86302 * 109.47058 * 240.00058 * 18 2 1 21 21 C 1.86302 * 109.47047 * 119.99866 * 18 2 1 22 22 H 1.08004 * 119.99712 * 355.07739 * 1 2 3 23 23 H 1.08000 * 120.00474 * 175.07448 * 1 2 3 24 24 H 1.07994 * 120.04131 * 0.02562 * 4 3 2 25 25 H 1.08003 * 119.89224 * 180.02562 * 7 6 5 26 26 H 1.08996 * 109.47446 * 135.08593 * 9 8 7 27 27 H 0.96705 * 113.99907 * 60.00208 * 10 9 8 28 28 H 1.09001 * 110.57399 * 268.63031 * 16 15 6 29 29 H 1.08998 * 110.56453 * 145.77016 * 16 15 6 30 30 H 1.09002 * 109.47446 * 299.99958 * 19 18 2 31 31 H 1.09004 * 109.47527 * 59.99828 * 19 18 2 32 32 H 1.09002 * 109.47484 * 180.02562 * 19 18 2 33 33 H 1.08994 * 109.46707 * 179.97438 * 20 18 2 34 34 H 1.09002 * 109.46654 * 300.00057 * 20 18 2 35 35 H 1.08995 * 109.46846 * 59.99572 * 20 18 2 36 36 H 1.08995 * 109.46839 * 299.99724 * 21 18 2 37 37 H 1.08994 * 109.46906 * 60.00184 * 21 18 2 38 38 H 1.09002 * 109.46552 * 180.02562 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0649 1.2798 0.0000 4 6 2.8446 1.6372 -1.1006 5 6 3.5342 2.8358 -1.0972 6 6 3.4498 3.6847 0.0056 7 6 2.6751 3.3277 1.0995 8 6 1.9813 2.1356 1.0993 9 6 1.1361 1.7555 2.2876 10 8 1.8044 0.7434 3.0433 11 14 0.8639 3.2538 3.3608 12 1 0.1694 4.3056 2.5755 13 1 0.0315 2.8792 4.5321 14 1 2.1743 3.7709 3.8305 15 8 4.2139 4.7898 -0.2364 16 6 5.0893 4.4227 -1.3189 17 8 4.3512 3.4102 -2.0280 18 14 2.2600 -1.6177 -0.0007 19 6 1.0493 -3.0337 -0.0006 20 6 3.3310 -1.7171 1.5204 21 6 3.3310 -1.7157 -1.5219 22 1 -0.5400 0.9319 0.0803 23 1 -0.5401 -0.9318 -0.0803 24 1 2.9088 0.9789 -1.9544 25 1 2.6113 3.9875 1.9522 26 1 0.1743 1.3760 1.9429 27 1 2.6692 1.0123 3.3825 28 1 6.0245 4.0159 -0.9341 29 1 5.2805 5.2801 -1.9642 30 1 0.4230 -2.9762 0.8897 31 1 0.4223 -2.9758 -0.8903 32 1 1.5943 -3.9777 -0.0005 33 1 3.8756 -2.6612 1.5202 34 1 4.0393 -0.8885 1.5207 35 1 2.7044 -1.6597 2.4103 36 1 2.7043 -1.6577 -2.4118 37 1 4.0393 -0.8873 -1.5215 38 1 3.8757 -2.6599 -1.5225 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:03:52 Heat of formation + Delta-G solvation = -90.017157 kcal Electronic energy + Delta-G solvation = -20621.043181 eV Core-core repulsion = 17553.634787 eV Total energy + Delta-G solvation = -3067.408394 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.109 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.14012 -40.00483 -37.30742 -37.15416 -34.51391 -32.23711 -30.29093 -29.45480 -28.31879 -28.28635 -27.37138 -26.16639 -24.20821 -22.94858 -21.07927 -19.16996 -18.50230 -18.21796 -17.60064 -17.04556 -16.18559 -16.06793 -15.86156 -15.32605 -15.12532 -14.86186 -14.62078 -14.21576 -14.08343 -13.93887 -13.92927 -13.72927 -13.60008 -13.31395 -13.24031 -13.00774 -13.00191 -12.67322 -12.33018 -12.14426 -11.86101 -11.69270 -11.12095 -10.85755 -10.81704 -10.37459 -10.15802 -9.78004 -8.87523 -0.01341 0.12217 1.01494 1.13522 1.38993 1.51092 1.70211 1.82264 1.89884 1.93022 2.17454 2.43923 2.48326 2.69838 3.42591 3.47789 3.65866 3.73136 3.91723 3.97694 4.09049 4.20676 4.41558 4.58000 4.70459 4.73772 4.76753 4.77895 4.80620 4.87182 4.90876 4.96222 5.01075 5.09596 5.15901 5.40470 5.46012 5.52265 5.57800 5.70783 5.75231 6.11721 6.55726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.360 4.360 3 C 0.008 3.992 4 C -0.102 4.102 5 C 0.045 3.955 6 C 0.028 3.972 7 C -0.104 4.104 8 C -0.112 4.112 9 C -0.071 4.071 10 O -0.528 6.528 11 Si 0.936 3.064 12 H -0.248 1.248 13 H -0.250 1.250 14 H -0.250 1.250 15 O -0.308 6.308 16 C 0.213 3.787 17 O -0.307 6.307 18 Si 1.055 2.945 19 C -0.450 4.450 20 C -0.441 4.441 21 C -0.453 4.453 22 H 0.094 0.906 23 H 0.109 0.891 24 H 0.142 0.858 25 H 0.135 0.865 26 H 0.122 0.878 27 H 0.374 0.626 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.538 -1.308 0.302 1.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.400 4.400 3 C 0.007 3.993 4 C -0.120 4.120 5 C 0.000 4.000 6 C -0.016 4.016 7 C -0.123 4.123 8 C -0.112 4.112 9 C -0.182 4.182 10 O -0.333 6.333 11 Si 0.759 3.241 12 H -0.172 1.172 13 H -0.174 1.174 14 H -0.174 1.174 15 O -0.225 6.225 16 C 0.101 3.899 17 O -0.223 6.223 18 Si 1.246 2.754 19 C -0.558 4.558 20 C -0.549 4.549 21 C -0.560 4.560 22 H 0.112 0.888 23 H 0.128 0.872 24 H 0.160 0.840 25 H 0.152 0.848 26 H 0.140 0.860 27 H 0.221 0.779 28 H 0.104 0.896 29 H 0.151 0.849 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.128 -0.650 0.535 0.852 hybrid contribution 0.800 0.457 -0.378 0.996 sum 0.672 -0.194 0.157 0.717 Atomic orbital electron populations 1.24272 0.95298 1.02044 0.94763 1.27757 1.00856 1.07269 1.04163 1.18442 0.95437 0.93777 0.91632 1.20170 0.98473 0.93423 0.99967 1.19731 0.97382 0.95225 0.87652 1.19695 0.99156 0.86718 0.96018 1.19910 0.98720 0.97238 0.96418 1.20070 1.00040 0.93633 0.97504 1.24908 0.98069 1.01783 0.93420 1.86536 1.36299 1.39606 1.70825 0.85890 0.81569 0.76593 0.80030 1.17182 1.17354 1.17433 1.87386 1.49862 1.32586 1.52628 1.25679 0.90817 0.90498 0.82899 1.87400 1.53177 1.49610 1.32142 0.78291 0.66290 0.63116 0.67713 1.26154 1.11396 1.13686 1.04552 1.26018 1.09511 1.03791 1.15588 1.26213 1.09878 1.04580 1.15367 0.88770 0.87245 0.83988 0.84780 0.86036 0.77867 0.89599 0.84900 0.90909 0.91185 0.90928 0.91645 0.91477 0.90147 0.91160 0.91141 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.16 12.08 28.83 0.35 0.51 16 2 C -0.36 0.26 3.51 -37.59 -0.13 0.12 16 3 C 0.01 0.01 4.90 -105.02 -0.51 -0.51 16 4 C -0.10 -0.15 9.22 -39.08 -0.36 -0.51 16 5 C 0.04 0.13 7.14 -39.12 -0.28 -0.15 16 6 C 0.03 0.09 7.15 -38.96 -0.28 -0.19 16 7 C -0.10 -0.17 8.66 -39.52 -0.34 -0.51 16 8 C -0.11 -0.07 5.27 -104.24 -0.55 -0.62 16 9 C -0.07 0.04 2.11 36.00 0.08 0.12 16 10 O -0.53 0.47 12.50 -35.23 -0.44 0.03 16 11 Si 0.94 -0.31 25.50 -169.99 -4.33 -4.65 16 12 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 13 H -0.25 -0.20 7.11 56.52 0.40 0.20 16 14 H -0.25 0.06 6.73 56.52 0.38 0.44 16 15 O -0.31 -0.90 11.40 -45.76 -0.52 -1.43 16 16 C 0.21 0.02 8.89 101.05 0.90 0.92 16 17 O -0.31 -0.85 11.40 -45.77 -0.52 -1.38 16 18 Si 1.05 -2.11 12.33 -169.99 -2.10 -4.21 16 19 C -0.45 0.74 7.88 101.05 0.80 1.54 16 20 C -0.44 0.43 8.65 101.05 0.87 1.30 16 21 C -0.45 0.55 8.20 101.05 0.83 1.38 16 22 H 0.09 -0.13 7.43 -52.48 -0.39 -0.52 16 23 H 0.11 -0.29 7.07 -52.49 -0.37 -0.66 16 24 H 0.14 0.03 7.08 -52.49 -0.37 -0.35 16 25 H 0.13 0.07 4.87 -52.48 -0.26 -0.18 16 26 H 0.12 -0.15 5.61 -51.93 -0.29 -0.45 16 27 H 0.37 -1.33 8.70 45.56 0.40 -0.94 16 28 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 16 29 H 0.13 -0.35 8.14 -51.93 -0.42 -0.77 16 30 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 33 H 0.06 -0.07 7.96 -51.93 -0.41 -0.49 16 34 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 35 H 0.08 -0.04 7.64 -51.93 -0.40 -0.44 16 36 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 37 H 0.07 -0.06 7.24 -51.93 -0.38 -0.43 16 38 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 LS Contribution 315.40 15.07 4.75 4.75 Total: 0.00 -5.11 315.40 -6.41 -11.52 By element: Atomic # 1 Polarization: -3.42 SS G_CDS: -4.61 Total: -8.03 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 1.36 Total: 3.39 kcal Atomic # 8 Polarization: -1.29 SS G_CDS: -1.48 Total: -2.78 kcal Atomic # 14 Polarization: -2.43 SS G_CDS: -6.43 Total: -8.86 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -5.11 -6.41 -11.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.494 kcal (2) G-P(sol) polarization free energy of solvation -5.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds