Wall clock time and date at job start Mon Mar 8 2021 08:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32595 * 1 3 3 C 1.47778 * 120.00095 * 2 1 4 4 C 1.39542 * 120.08147 * 245.71571 * 3 2 1 5 5 C 1.38279 * 119.91620 * 179.97438 * 4 3 2 6 6 C 1.39426 * 119.96677 * 0.02562 * 5 4 3 7 7 C 1.38716 * 120.05829 * 0.02562 * 6 5 4 8 8 C 1.37928 * 120.21320 * 359.73535 * 7 6 5 9 9 C 1.50692 * 119.99822 * 180.28275 * 8 7 6 10 10 O 1.42903 * 109.47160 * 255.08310 * 9 8 7 11 11 Si 1.86303 * 109.47600 * 15.08658 * 9 8 7 12 12 H 1.48496 * 109.46899 * 59.99606 * 11 9 8 13 13 H 1.48491 * 109.47521 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46695 * 300.00276 * 11 9 8 15 15 O 1.36522 * 108.58532 * 179.97438 * 6 5 4 16 16 C 1.43968 * 105.50220 * 342.67329 * 15 6 5 17 17 O 1.36524 * 131.41285 * 179.97438 * 5 4 3 18 18 Si 1.86802 * 120.00067 * 180.02562 * 2 1 3 19 19 C 1.86296 * 109.46927 * 359.97438 * 18 2 1 20 20 C 1.86302 * 109.47058 * 240.00058 * 18 2 1 21 21 C 1.86302 * 109.47047 * 119.99866 * 18 2 1 22 22 H 1.08004 * 119.99712 * 355.07739 * 1 2 3 23 23 H 1.08000 * 120.00474 * 175.07448 * 1 2 3 24 24 H 1.07994 * 120.04131 * 0.02562 * 4 3 2 25 25 H 1.08003 * 119.89224 * 180.02562 * 7 6 5 26 26 H 1.08996 * 109.47446 * 135.08593 * 9 8 7 27 27 H 0.96705 * 113.99907 * 60.00208 * 10 9 8 28 28 H 1.09001 * 110.57399 * 268.63031 * 16 15 6 29 29 H 1.08998 * 110.56453 * 145.77016 * 16 15 6 30 30 H 1.09002 * 109.47446 * 299.99958 * 19 18 2 31 31 H 1.09004 * 109.47527 * 59.99828 * 19 18 2 32 32 H 1.09002 * 109.47484 * 180.02562 * 19 18 2 33 33 H 1.08994 * 109.46707 * 179.97438 * 20 18 2 34 34 H 1.09002 * 109.46654 * 300.00057 * 20 18 2 35 35 H 1.08995 * 109.46846 * 59.99572 * 20 18 2 36 36 H 1.08995 * 109.46839 * 299.99724 * 21 18 2 37 37 H 1.08994 * 109.46906 * 60.00184 * 21 18 2 38 38 H 1.09002 * 109.46552 * 180.02562 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0649 1.2798 0.0000 4 6 2.8446 1.6372 -1.1006 5 6 3.5342 2.8358 -1.0972 6 6 3.4498 3.6847 0.0056 7 6 2.6751 3.3277 1.0995 8 6 1.9813 2.1356 1.0993 9 6 1.1361 1.7555 2.2876 10 8 1.8044 0.7434 3.0433 11 14 0.8639 3.2538 3.3608 12 1 0.1694 4.3056 2.5755 13 1 0.0315 2.8792 4.5321 14 1 2.1743 3.7709 3.8305 15 8 4.2139 4.7898 -0.2364 16 6 5.0893 4.4227 -1.3189 17 8 4.3512 3.4102 -2.0280 18 14 2.2600 -1.6177 -0.0007 19 6 1.0493 -3.0337 -0.0006 20 6 3.3310 -1.7171 1.5204 21 6 3.3310 -1.7157 -1.5219 22 1 -0.5400 0.9319 0.0803 23 1 -0.5401 -0.9318 -0.0803 24 1 2.9088 0.9789 -1.9544 25 1 2.6113 3.9875 1.9522 26 1 0.1743 1.3760 1.9429 27 1 2.6692 1.0123 3.3825 28 1 6.0245 4.0159 -0.9341 29 1 5.2805 5.2801 -1.9642 30 1 0.4230 -2.9762 0.8897 31 1 0.4223 -2.9758 -0.8903 32 1 1.5943 -3.9777 -0.0005 33 1 3.8756 -2.6612 1.5202 34 1 4.0393 -0.8885 1.5207 35 1 2.7044 -1.6597 2.4103 36 1 2.7043 -1.6577 -2.4118 37 1 4.0393 -0.8873 -1.5215 38 1 3.8757 -2.6599 -1.5225 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:03:52 Heat of formation + Delta-G solvation = -83.269028 kcal Electronic energy + Delta-G solvation = -20620.750560 eV Core-core repulsion = 17553.634787 eV Total energy + Delta-G solvation = -3067.115774 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.109 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.21820 -40.03073 -37.39815 -37.14133 -34.48109 -32.28650 -30.28525 -29.33205 -28.20897 -28.15481 -27.37227 -26.18554 -24.27577 -22.99459 -21.05700 -19.20520 -18.55863 -18.25315 -17.58205 -17.07978 -16.17503 -16.09231 -15.84824 -15.29435 -15.20278 -14.90954 -14.61425 -14.20399 -14.05264 -13.96487 -13.79092 -13.63798 -13.57350 -13.21346 -13.14283 -12.89488 -12.88226 -12.66083 -12.32597 -12.18538 -11.87784 -11.68399 -11.02870 -10.77458 -10.69854 -10.34105 -10.09105 -9.83681 -8.95058 -0.09269 0.03455 1.08921 1.16775 1.39056 1.50068 1.70612 1.88045 1.91430 2.09072 2.28616 2.41342 2.47939 2.79563 3.33873 3.54472 3.70243 3.78721 3.92025 4.00230 4.07733 4.19903 4.38621 4.61590 4.80630 4.85906 4.86944 4.88206 4.92595 4.93452 4.96204 4.99325 5.04063 5.06031 5.15063 5.35805 5.54620 5.62848 5.72311 5.79751 5.83491 6.03914 6.75082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.375 4.375 3 C 0.009 3.991 4 C -0.108 4.108 5 C 0.028 3.972 6 C 0.008 3.992 7 C -0.111 4.111 8 C -0.112 4.112 9 C -0.064 4.064 10 O -0.533 6.533 11 Si 0.961 3.039 12 H -0.265 1.265 13 H -0.264 1.264 14 H -0.252 1.252 15 O -0.327 6.327 16 C 0.204 3.796 17 O -0.324 6.324 18 Si 1.104 2.896 19 C -0.457 4.457 20 C -0.453 4.453 21 C -0.466 4.466 22 H 0.094 0.906 23 H 0.126 0.874 24 H 0.151 0.849 25 H 0.140 0.860 26 H 0.130 0.870 27 H 0.386 0.614 28 H 0.105 0.895 29 H 0.158 0.842 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.214 -2.057 0.339 2.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.415 4.415 3 C 0.009 3.991 4 C -0.126 4.126 5 C -0.016 4.016 6 C -0.036 4.036 7 C -0.129 4.129 8 C -0.113 4.113 9 C -0.175 4.175 10 O -0.339 6.339 11 Si 0.786 3.214 12 H -0.190 1.190 13 H -0.188 1.188 14 H -0.176 1.176 15 O -0.244 6.244 16 C 0.094 3.906 17 O -0.241 6.241 18 Si 1.292 2.708 19 C -0.565 4.565 20 C -0.560 4.560 21 C -0.572 4.572 22 H 0.113 0.887 23 H 0.144 0.856 24 H 0.169 0.831 25 H 0.158 0.842 26 H 0.148 0.852 27 H 0.235 0.765 28 H 0.122 0.878 29 H 0.175 0.825 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.429 -1.392 0.579 1.567 hybrid contribution 0.908 0.699 -0.379 1.207 sum 0.479 -0.692 0.199 0.865 Atomic orbital electron populations 1.24487 0.95154 1.02919 0.93553 1.27996 1.01263 1.07055 1.05180 1.18652 0.94998 0.94246 0.91210 1.20386 0.98416 0.93253 1.00583 1.19963 0.97980 0.95813 0.87836 1.19933 0.99974 0.87064 0.96662 1.20097 0.98667 0.97747 0.96412 1.20246 0.99787 0.93259 0.97962 1.24853 0.98215 1.01655 0.92771 1.86513 1.37173 1.39558 1.70699 0.85552 0.80782 0.76061 0.79028 1.18961 1.18820 1.17582 1.87338 1.50450 1.33044 1.53540 1.26097 0.90641 0.91098 0.82777 1.87355 1.53578 1.50272 1.32882 0.77523 0.65106 0.62040 0.66115 1.26222 1.11624 1.13748 1.04900 1.26171 1.09774 1.03647 1.16366 1.26366 1.10165 1.04414 1.16260 0.88743 0.85602 0.83107 0.84218 0.85231 0.76524 0.87797 0.82457 0.90722 0.90681 0.90877 0.91558 0.91971 0.90445 0.90946 0.91705 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.45 12.08 66.66 0.81 1.25 16 2 C -0.38 0.74 3.51 23.64 0.08 0.82 16 3 C 0.01 0.02 4.90 -20.12 -0.10 -0.08 16 4 C -0.11 -0.39 9.22 22.59 0.21 -0.18 16 5 C 0.03 0.19 7.14 22.57 0.16 0.36 16 6 C 0.01 0.06 7.15 22.67 0.16 0.22 16 7 C -0.11 -0.45 8.66 22.31 0.19 -0.26 16 8 C -0.11 -0.18 5.27 -19.62 -0.10 -0.29 16 9 C -0.06 0.09 2.11 71.23 0.15 0.24 16 10 O -0.53 1.20 12.50 -148.98 -1.86 -0.67 16 11 Si 0.96 -0.33 25.50 68.60 1.75 1.42 16 12 H -0.27 -0.63 7.11 99.48 0.71 0.08 16 13 H -0.26 -0.51 7.11 99.48 0.71 0.20 16 14 H -0.25 0.07 6.73 99.48 0.67 0.74 16 15 O -0.33 -2.29 11.40 -76.30 -0.87 -3.16 16 16 C 0.20 0.16 8.89 113.37 1.01 1.17 16 17 O -0.32 -2.13 11.40 -76.33 -0.87 -3.00 16 18 Si 1.10 -5.03 12.33 68.60 0.85 -4.18 16 19 C -0.46 2.02 7.88 113.37 0.89 2.91 16 20 C -0.45 0.95 8.65 113.37 0.98 1.93 16 21 C -0.47 1.19 8.20 113.37 0.93 2.12 16 22 H 0.09 -0.35 7.43 -2.91 -0.02 -0.37 16 23 H 0.13 -0.88 7.07 -2.91 -0.02 -0.90 16 24 H 0.15 0.14 7.08 -2.91 -0.02 0.12 16 25 H 0.14 0.28 4.87 -2.91 -0.01 0.26 16 26 H 0.13 -0.41 5.61 -2.39 -0.01 -0.42 16 27 H 0.39 -2.88 8.70 -74.05 -0.64 -3.52 16 28 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H 0.16 -0.83 8.14 -2.39 -0.02 -0.85 16 30 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 31 H 0.07 -0.39 7.96 -2.38 -0.02 -0.41 16 32 H 0.07 -0.31 7.96 -2.39 -0.02 -0.32 16 33 H 0.07 -0.16 7.96 -2.39 -0.02 -0.17 16 34 H 0.06 -0.07 7.96 -2.39 -0.02 -0.09 16 35 H 0.08 -0.11 7.64 -2.39 -0.02 -0.13 16 36 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 37 H 0.06 -0.08 7.24 -2.39 -0.02 -0.10 16 38 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 Total: 0.00 -11.97 315.40 5.51 -6.46 By element: Atomic # 1 Polarization: -8.22 SS G_CDS: 1.14 Total: -7.08 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 5.37 Total: 10.21 kcal Atomic # 8 Polarization: -3.22 SS G_CDS: -3.60 Total: -6.82 kcal Atomic # 14 Polarization: -5.36 SS G_CDS: 2.60 Total: -2.76 kcal Total: -11.97 5.51 -6.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.807 kcal (2) G-P(sol) polarization free energy of solvation -11.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds