Wall clock time and date at job start Mon Mar 8 2021 08:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32597 * 1 3 3 C 1.47776 * 119.99791 * 2 1 4 4 C 1.39555 * 120.08411 * 180.02562 * 3 2 1 5 5 C 1.37880 * 119.91545 * 179.97438 * 4 3 2 6 6 C 1.38835 * 120.08232 * 359.97438 * 5 4 3 7 7 O 1.35865 * 119.91296 * 180.02562 * 6 5 4 8 8 C 1.42899 * 116.99998 * 0.02562 * 7 6 5 9 9 F 1.39898 * 109.46823 * 299.99972 * 8 7 6 10 10 F 1.39905 * 109.47259 * 59.99728 * 8 7 6 11 11 C 1.38882 * 120.17727 * 0.04038 * 6 5 4 12 12 C 1.50696 * 119.96218 * 179.97438 * 11 6 5 13 13 O 1.42900 * 109.46984 * 285.00514 * 12 11 6 14 14 Si 1.86295 * 109.47479 * 165.00613 * 12 11 6 15 15 H 1.48498 * 109.46989 * 59.99653 * 14 12 11 16 16 H 1.48494 * 109.47513 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46934 * 300.00279 * 14 12 11 18 18 C 1.37839 * 120.08017 * 359.70819 * 11 6 5 19 19 Si 1.86801 * 119.99996 * 179.97438 * 2 1 3 20 20 C 1.86300 * 109.46957 * 359.97438 * 19 2 1 21 21 C 1.86298 * 109.47026 * 120.00101 * 19 2 1 22 22 C 1.86301 * 109.47053 * 240.00115 * 19 2 1 23 23 H 1.08002 * 120.00233 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.99999 * 359.72499 * 1 2 3 25 25 H 1.08008 * 120.04338 * 359.97438 * 4 3 2 26 26 H 1.07994 * 119.95739 * 180.02562 * 5 4 3 27 27 H 1.08997 * 109.47460 * 179.97438 * 8 7 6 28 28 H 1.09005 * 109.46792 * 45.00121 * 12 11 6 29 29 H 0.96703 * 113.99991 * 300.00157 * 13 12 11 30 30 H 1.07996 * 120.04068 * 180.29552 * 18 11 6 31 31 H 1.09003 * 109.46704 * 60.00197 * 20 19 2 32 32 H 1.09003 * 109.46993 * 180.02562 * 20 19 2 33 33 H 1.08999 * 109.47326 * 299.99568 * 20 19 2 34 34 H 1.08998 * 109.47156 * 60.00082 * 21 19 2 35 35 H 1.08995 * 109.46874 * 180.02562 * 21 19 2 36 36 H 1.08997 * 109.46887 * 299.99740 * 21 19 2 37 37 H 1.09004 * 109.47199 * 59.99984 * 22 19 2 38 38 H 1.08998 * 109.47265 * 180.02562 * 22 19 2 39 39 H 1.09007 * 109.47146 * 300.00054 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0648 1.2798 0.0000 4 6 3.4603 1.2819 -0.0005 5 6 4.1462 2.4780 -0.0011 6 6 3.4502 3.6793 -0.0016 7 8 4.1295 4.8559 -0.0027 8 6 5.5565 4.7812 -0.0037 9 9 5.9885 4.0987 1.1385 10 9 5.9868 4.0976 -1.1460 11 6 2.0613 3.6815 -0.0008 12 6 1.3107 4.9882 -0.0008 13 8 1.3768 5.5754 1.3003 14 14 -0.4700 4.6816 -0.4540 15 1 -1.0812 3.7596 0.5368 16 1 -1.2095 5.9693 -0.4546 17 1 -0.5386 4.0712 -1.8061 18 6 1.3686 2.4898 -0.0055 19 14 2.2600 -1.6177 0.0007 20 6 1.0493 -3.0337 0.0021 21 6 3.3310 -1.7171 -1.5203 22 6 3.3310 -1.7157 1.5219 23 1 -0.5400 -0.9353 0.0004 24 1 -0.5400 0.9353 0.0045 25 1 4.0025 0.3477 -0.0005 26 1 5.2261 2.4804 -0.0019 27 1 5.9731 5.7884 -0.0050 28 1 1.7595 5.6649 -0.7280 29 1 0.9949 5.0269 1.9992 30 1 0.2887 2.4922 -0.0096 31 1 0.4223 -2.9765 -0.8877 32 1 1.5943 -3.9777 0.0030 33 1 0.4230 -2.9755 0.8923 34 1 4.0393 -0.8886 -1.5207 35 1 3.8757 -2.6612 -1.5201 36 1 2.7044 -1.6598 -2.4103 37 1 2.7043 -1.6576 2.4119 38 1 3.8764 -2.6595 1.5222 39 1 4.0394 -0.8872 1.5216 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:04:23 Heat of formation + Delta-G solvation = -167.268796 kcal Electronic energy + Delta-G solvation = -23327.213005 eV Core-core repulsion = 19608.917491 eV Total energy + Delta-G solvation = -3718.295515 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 302.106 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.36982 -48.36375 -41.39241 -38.92538 -37.76292 -34.58417 -32.97598 -30.24182 -29.50669 -28.31302 -28.30558 -27.20464 -26.73234 -24.21244 -22.86593 -20.66613 -20.15492 -18.99047 -18.93592 -18.02317 -17.37040 -17.14102 -16.39436 -15.99961 -15.77277 -15.45674 -15.09530 -14.93931 -14.84037 -14.69021 -14.66708 -14.24530 -14.06695 -13.92925 -13.74608 -13.56904 -13.50458 -13.25679 -13.10725 -13.02899 -12.98903 -12.83120 -12.46097 -12.24376 -12.05065 -11.76248 -11.36453 -10.80727 -10.72669 -10.53300 -10.43485 -10.15271 -8.96007 -0.16988 0.07268 1.08351 1.26787 1.35799 1.46935 1.56594 1.78811 1.83853 1.97460 2.14256 2.50772 2.62615 2.72927 3.38350 3.48078 3.62101 3.64988 3.69198 3.78477 4.02288 4.09964 4.28659 4.49616 4.72316 4.78777 4.79417 4.80804 4.84760 4.85877 4.87539 4.88650 4.96344 5.05917 5.21365 5.33371 5.49375 5.58464 5.63711 5.68027 5.80827 5.96751 6.65517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.387 4.387 3 C -0.057 4.057 4 C -0.087 4.087 5 C -0.196 4.196 6 C 0.110 3.890 7 O -0.319 6.319 8 C 0.404 3.596 9 F -0.209 7.209 10 F -0.209 7.209 11 C -0.140 4.140 12 C -0.075 4.075 13 O -0.547 6.547 14 Si 0.977 3.023 15 H -0.241 1.241 16 H -0.266 1.266 17 H -0.256 1.256 18 C -0.107 4.107 19 Si 1.098 2.902 20 C -0.456 4.456 21 C -0.465 4.465 22 C -0.464 4.464 23 H 0.128 0.872 24 H 0.092 0.908 25 H 0.152 0.848 26 H 0.138 0.862 27 H 0.228 0.772 28 H 0.115 0.885 29 H 0.386 0.614 30 H 0.144 0.856 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.842 -2.064 -0.063 2.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.426 4.426 3 C -0.057 4.057 4 C -0.104 4.104 5 C -0.215 4.215 6 C 0.066 3.934 7 O -0.237 6.237 8 C 0.315 3.685 9 F -0.191 7.191 10 F -0.191 7.191 11 C -0.141 4.141 12 C -0.185 4.185 13 O -0.354 6.354 14 Si 0.799 3.201 15 H -0.164 1.164 16 H -0.191 1.191 17 H -0.180 1.180 18 C -0.125 4.125 19 Si 1.287 2.713 20 C -0.564 4.564 21 C -0.571 4.571 22 C -0.570 4.570 23 H 0.146 0.854 24 H 0.110 0.890 25 H 0.169 0.831 26 H 0.156 0.844 27 H 0.244 0.756 28 H 0.133 0.867 29 H 0.235 0.765 30 H 0.161 0.839 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.487 -1.496 -0.612 2.196 hybrid contribution 0.634 -0.280 0.356 0.779 sum -0.853 -1.776 -0.255 1.987 Atomic orbital electron populations 1.24663 0.95760 1.02996 0.93994 1.28416 1.01654 1.08217 1.04352 1.19109 0.93023 0.93539 1.00072 1.21462 0.93640 0.98181 0.97149 1.21662 1.01102 0.92288 1.06422 1.18865 0.91614 0.84305 0.98599 1.86676 1.19189 1.29726 1.88084 1.24219 0.78328 0.95083 0.70909 1.93077 1.89575 1.83751 1.52704 1.93082 1.89627 1.83735 1.52649 1.19752 0.90877 0.96796 1.06662 1.24985 1.10643 0.93441 0.89396 1.86512 1.84982 1.47333 1.16568 0.85338 0.73808 0.79995 0.80922 1.16438 1.19106 1.17960 1.21380 1.00524 0.91094 0.99461 0.77606 0.65314 0.62167 0.66236 1.26196 1.11535 1.13747 1.04965 1.26372 1.10052 1.04747 1.15935 1.26369 1.10025 1.04738 1.15912 0.85389 0.89028 0.83108 0.84421 0.75579 0.86670 0.76527 0.83854 0.90671 0.90510 0.90648 0.91499 0.90439 0.91165 0.91133 0.90450 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.31 13.39 66.66 0.89 1.20 16 2 C -0.39 0.24 4.70 23.64 0.11 0.35 16 3 C -0.06 -0.19 5.84 -20.11 -0.12 -0.30 16 4 C -0.09 -0.29 8.70 22.50 0.20 -0.10 16 5 C -0.20 -1.10 8.24 22.33 0.18 -0.91 16 6 C 0.11 0.72 6.46 22.57 0.15 0.87 16 7 O -0.32 -1.51 9.75 -92.03 -0.90 -2.40 16 8 C 0.40 -0.29 5.98 113.37 0.68 0.39 16 9 F -0.21 -0.64 15.57 44.97 0.70 0.06 16 10 F -0.21 -0.54 15.57 44.97 0.70 0.16 16 11 C -0.14 -0.68 5.27 -19.81 -0.10 -0.79 16 12 C -0.07 -0.20 2.37 71.23 0.17 -0.03 16 13 O -0.55 -1.93 12.88 -148.98 -1.92 -3.85 16 14 Si 0.98 0.34 25.48 68.60 1.75 2.08 16 15 H -0.24 0.36 6.74 99.48 0.67 1.03 16 16 H -0.27 -0.79 7.11 99.48 0.71 -0.09 16 17 H -0.26 -0.42 7.11 99.48 0.71 0.29 16 18 C -0.11 -0.38 8.00 22.50 0.18 -0.20 16 19 Si 1.10 -5.21 10.79 68.60 0.74 -4.47 16 20 C -0.46 2.26 7.86 113.37 0.89 3.16 16 21 C -0.46 1.24 8.65 113.37 0.98 2.22 16 22 C -0.46 1.27 8.65 113.37 0.98 2.25 16 23 H 0.13 -0.80 7.05 -2.91 -0.02 -0.82 16 24 H 0.09 -0.22 6.03 -2.91 -0.02 -0.24 16 25 H 0.15 -0.12 3.69 -2.91 -0.01 -0.13 16 26 H 0.14 0.64 5.07 -2.91 -0.01 0.63 16 27 H 0.23 -2.45 8.14 -2.39 -0.02 -2.47 16 28 H 0.12 0.29 7.82 -2.38 -0.02 0.27 16 29 H 0.39 -1.18 8.70 -74.06 -0.64 -1.83 16 30 H 0.14 0.05 2.98 -2.91 -0.01 0.04 16 31 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 32 H 0.08 -0.39 7.96 -2.39 -0.02 -0.41 16 33 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 34 H 0.07 -0.12 6.57 -2.39 -0.02 -0.13 16 35 H 0.08 -0.29 7.96 -2.39 -0.02 -0.30 16 36 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 37 H 0.07 -0.16 7.96 -2.38 -0.02 -0.18 16 38 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 39 H 0.07 -0.12 6.57 -2.38 -0.02 -0.14 16 Total: 0.00 -13.53 323.48 7.43 -6.10 By element: Atomic # 1 Polarization: -6.97 SS G_CDS: 1.17 Total: -5.81 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.19 Total: 8.11 kcal Atomic # 8 Polarization: -3.43 SS G_CDS: -2.82 Total: -6.25 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 1.40 Total: 0.23 kcal Atomic # 14 Polarization: -4.87 SS G_CDS: 2.49 Total: -2.38 kcal Total: -13.53 7.43 -6.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.169 kcal (2) G-P(sol) polarization free energy of solvation -13.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds