Wall clock time and date at job start Mon Mar 8 2021 08:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47073 * 332.68579 * 3 2 1 5 5 C 1.35857 * 117.00227 * 179.97438 * 4 3 2 6 6 C 1.38847 * 119.91408 * 0.02688 * 5 4 3 7 7 C 1.37874 * 120.08916 * 179.97438 * 6 5 4 8 8 C 1.39556 * 119.91076 * 359.97438 * 7 6 5 9 9 C 1.47779 * 120.08307 * 180.02562 * 8 7 6 10 10 C 1.32600 * 119.99992 * 226.51125 * 9 8 7 11 11 Si 1.86792 * 119.99968 * 46.51239 * 9 8 7 12 12 C 1.86299 * 109.47247 * 1.49815 * 11 9 8 13 13 C 1.86306 * 109.47123 * 121.49814 * 11 9 8 14 14 C 1.86302 * 109.47166 * 241.49692 * 11 9 8 15 15 C 1.39598 * 119.83199 * 359.73191 * 8 7 6 16 16 C 1.37836 * 119.91063 * 0.53686 * 15 8 7 17 17 C 1.50698 * 119.95732 * 179.73013 * 16 15 8 18 18 O 1.42896 * 109.47476 * 254.72983 * 17 16 15 19 19 Si 1.86303 * 109.47132 * 14.73102 * 17 16 15 20 20 H 1.48504 * 109.47023 * 59.99762 * 19 17 16 21 21 H 1.48502 * 109.47221 * 299.99819 * 19 17 16 22 22 H 1.48501 * 109.47243 * 179.97438 * 19 17 16 23 23 H 4.38445 * 5.44435 * 179.97438 * 4 1 2 24 24 H 1.09004 * 109.46945 * 212.69307 * 3 2 1 25 25 H 1.08993 * 109.46979 * 92.68571 * 3 2 1 26 26 H 1.08000 * 119.95231 * 359.97438 * 6 5 4 27 27 H 1.07996 * 120.04246 * 180.02562 * 7 6 5 28 28 H 1.07992 * 120.00304 * 180.02562 * 10 9 8 29 29 H 1.08008 * 119.99674 * 0.02562 * 10 9 8 30 30 H 1.08997 * 109.47257 * 53.64416 * 12 11 9 31 31 H 1.09004 * 109.47272 * 173.64698 * 12 11 9 32 32 H 1.09003 * 109.46930 * 293.64846 * 12 11 9 33 33 H 1.09000 * 109.46878 * 60.00217 * 13 11 9 34 34 H 1.08997 * 109.46752 * 179.97438 * 13 11 9 35 35 H 1.08996 * 109.47063 * 300.00009 * 13 11 9 36 36 H 1.09006 * 109.46796 * 60.00043 * 14 11 9 37 37 H 1.09003 * 109.47291 * 180.02562 * 14 11 9 38 38 H 1.09000 * 109.47499 * 300.00189 * 14 11 9 39 39 H 1.08002 * 120.04662 * 180.27072 * 15 8 7 40 40 H 1.09003 * 109.47249 * 134.72925 * 17 16 15 41 41 H 0.96697 * 114.00093 * 300.00459 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1229 -1.1962 0.6182 5 6 4.4698 -1.3541 0.6995 6 6 5.3136 -0.3742 0.1937 7 6 6.6811 -0.5305 0.2747 8 6 7.2169 -1.6751 0.8665 9 6 8.6820 -1.8463 0.9558 10 6 9.2365 -3.0016 0.6154 11 14 9.7527 -0.4350 1.5483 12 6 8.6753 1.0200 1.9876 13 6 10.7131 -0.9728 3.0515 14 6 10.9377 0.0552 0.1970 15 6 6.3653 -2.6552 1.3794 16 6 4.9993 -2.4943 1.2896 17 6 4.0791 -3.5545 1.8375 18 8 3.5122 -4.2980 0.7569 19 14 5.0434 -4.7028 2.9431 20 1 5.6324 -3.9301 4.0661 21 1 6.1298 -5.3462 2.1614 22 1 4.1364 -5.7472 3.4835 23 1 -1.0498 -0.0003 0.0003 24 1 3.0090 0.8657 0.5551 25 1 3.0093 0.0490 -1.0265 26 1 4.8981 0.5115 -0.2638 27 1 7.3366 0.2323 -0.1186 28 1 10.3071 -3.1269 0.6811 29 1 8.6174 -3.8175 0.2724 30 1 7.9091 0.7042 2.6956 31 1 9.2866 1.8018 2.4384 32 1 8.1998 1.4053 1.0856 33 1 11.3435 -1.8240 2.7945 34 1 11.3382 -0.1494 3.3969 35 1 10.0198 -1.2596 3.8421 36 1 10.3758 0.3699 -0.6825 37 1 11.5629 0.8785 0.5429 38 1 11.5681 -0.7960 -0.0600 39 1 6.7762 -3.5404 1.8420 40 1 3.2816 -3.0823 2.4113 41 1 2.9952 -3.7627 0.1396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:06:51 Heat of formation + Delta-G solvation = -15.681903 kcal Electronic energy + Delta-G solvation = -20820.870078 eV Core-core repulsion = 17791.603535 eV Total energy + Delta-G solvation = -3029.266543 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.125 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.47111 -39.00997 -37.51951 -34.82157 -34.04361 -32.75452 -30.09535 -29.57545 -28.76256 -28.44218 -28.14810 -26.54168 -24.00114 -22.78205 -20.33449 -19.48228 -19.33870 -18.15107 -17.22771 -17.13542 -16.68166 -16.18096 -15.58817 -15.32524 -15.12902 -14.86051 -14.47170 -14.22840 -14.13422 -13.91445 -13.80615 -13.69563 -13.43109 -13.35853 -13.29044 -13.13566 -12.89949 -12.61140 -12.47020 -12.13512 -11.74305 -11.67304 -11.37784 -11.22496 -11.10138 -10.99332 -10.90474 -10.73656 -10.32058 -9.93125 -8.83978 0.14865 0.27434 1.15992 1.21160 1.29552 1.58140 1.62334 1.70349 1.71964 1.84404 2.04888 2.08370 2.52079 2.54429 2.80680 3.29351 3.62674 3.81850 3.85012 3.92167 4.04533 4.13494 4.24343 4.32041 4.46944 4.61267 4.68043 4.68356 4.72397 4.73221 4.73813 4.76357 4.80388 4.82399 4.92634 5.10148 5.26047 5.42514 5.43629 5.48455 5.51266 5.55301 5.68745 5.86221 6.29194 6.45966 6.69047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.209 4.209 3 C 0.175 3.825 4 O -0.311 6.311 5 C 0.135 3.865 6 C -0.201 4.201 7 C -0.072 4.072 8 C -0.061 4.061 9 C -0.370 4.370 10 C -0.130 4.130 11 Si 1.047 2.953 12 C -0.447 4.447 13 C -0.448 4.448 14 C -0.447 4.447 15 C -0.083 4.083 16 C -0.139 4.139 17 C -0.083 4.083 18 O -0.538 6.538 19 Si 1.011 2.989 20 H -0.247 1.247 21 H -0.252 1.252 22 H -0.256 1.256 23 H 0.226 0.774 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.076 0.924 41 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 3.229 -0.360 3.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.209 4.209 3 C 0.101 3.899 4 O -0.225 6.225 5 C 0.090 3.910 6 C -0.220 4.220 7 C -0.089 4.089 8 C -0.061 4.061 9 C -0.411 4.411 10 C -0.166 4.166 11 Si 1.238 2.762 12 C -0.555 4.555 13 C -0.556 4.556 14 C -0.555 4.555 15 C -0.100 4.100 16 C -0.140 4.140 17 C -0.191 4.191 18 O -0.344 6.344 19 Si 0.831 3.169 20 H -0.171 1.171 21 H -0.176 1.176 22 H -0.180 1.180 23 H 0.242 0.758 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.150 0.850 27 H 0.151 0.849 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.148 0.852 40 H 0.094 0.906 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.596 2.013 0.510 2.619 hybrid contribution -0.859 1.034 -0.889 1.611 sum 0.737 3.047 -0.378 3.157 Atomic orbital electron populations 1.25108 0.95951 0.96580 0.98892 1.22177 0.93455 1.03184 1.02071 1.19268 0.85096 0.86903 0.98632 1.86045 1.19333 1.41055 1.76076 1.18735 0.81690 0.94111 0.96454 1.21194 0.94352 1.00144 1.06277 1.21119 0.94148 0.96634 0.97049 1.18806 0.93184 0.94319 0.99836 1.27961 0.98444 1.09527 1.05184 1.24298 1.00629 0.96381 0.95320 0.78384 0.65768 0.64824 0.67190 1.26230 1.09826 1.13888 1.05561 1.26114 1.08627 1.05884 1.14933 1.26126 1.10821 1.05648 1.12903 1.21114 0.91390 0.98491 0.99052 1.19530 0.94369 0.95600 1.04454 1.25195 0.99860 0.98801 0.95260 1.86671 1.71189 1.37166 1.39330 0.84524 0.78153 0.77721 0.76520 1.17053 1.17582 1.17980 0.75762 0.89389 0.89364 0.84970 0.84938 0.87733 0.88699 0.90963 0.91134 0.91065 0.91188 0.90977 0.91040 0.91118 0.90993 0.91175 0.85187 0.90608 0.78347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.00 19.25 29.55 0.57 0.57 16 2 C -0.21 -0.22 13.73 -37.12 -0.51 -0.73 16 3 C 0.17 -0.07 5.21 34.37 0.18 0.11 16 4 O -0.31 -0.52 8.97 -19.29 -0.17 -0.69 16 5 C 0.14 0.24 6.62 -39.12 -0.26 -0.02 16 6 C -0.20 -0.06 9.02 -39.49 -0.36 -0.42 16 7 C -0.07 -0.02 8.21 -39.22 -0.32 -0.34 16 8 C -0.06 -0.07 5.25 -105.00 -0.55 -0.62 16 9 C -0.37 0.10 4.41 -37.59 -0.17 -0.06 16 10 C -0.13 0.06 13.31 28.83 0.38 0.44 16 11 Si 1.05 -2.43 11.67 -169.99 -1.98 -4.41 16 12 C -0.45 0.73 7.69 101.05 0.78 1.51 16 13 C -0.45 0.65 8.65 101.05 0.87 1.53 16 14 C -0.45 0.82 8.65 101.05 0.87 1.69 16 15 C -0.08 -0.18 7.94 -39.22 -0.31 -0.49 16 16 C -0.14 -0.34 5.28 -104.53 -0.55 -0.89 16 17 C -0.08 -0.19 2.33 36.00 0.08 -0.10 16 18 O -0.54 -1.71 12.65 -35.23 -0.45 -2.15 16 19 Si 1.01 1.80 25.73 -169.99 -4.37 -2.57 16 20 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 21 H -0.25 -0.54 6.74 56.52 0.38 -0.16 16 22 H -0.26 -0.68 7.11 56.52 0.40 -0.28 16 23 H 0.23 -0.77 7.80 -54.10 -0.42 -1.19 16 24 H 0.09 -0.18 7.65 -51.93 -0.40 -0.57 16 25 H 0.09 -0.18 7.65 -51.93 -0.40 -0.58 16 26 H 0.13 -0.28 6.28 -52.49 -0.33 -0.61 16 27 H 0.13 -0.25 5.90 -52.49 -0.31 -0.56 16 28 H 0.10 -0.24 7.72 -52.49 -0.41 -0.65 16 29 H 0.09 0.01 7.85 -52.48 -0.41 -0.40 16 30 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 31 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 32 H 0.07 -0.15 6.23 -51.93 -0.32 -0.47 16 33 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 36 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 37 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 38 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 39 H 0.13 0.19 4.76 -52.49 -0.25 -0.06 16 40 H 0.08 0.12 7.82 -51.93 -0.41 -0.28 16 41 H 0.37 0.46 8.59 45.56 0.39 0.85 16 LS Contribution 347.49 15.07 5.24 5.24 Total: 0.00 -5.04 347.49 -6.41 -11.45 By element: Atomic # 1 Polarization: -3.66 SS G_CDS: -5.39 Total: -9.04 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 0.71 Total: 2.18 kcal Atomic # 8 Polarization: -2.22 SS G_CDS: -0.62 Total: -2.84 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: -6.36 Total: -6.98 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -5.04 -6.41 -11.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.231 kcal (2) G-P(sol) polarization free energy of solvation -5.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds