Wall clock time and date at job start Mon Mar 8 2021 08:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 O 1.42900 * 109.47073 * 332.68579 * 3 2 1 5 5 C 1.35857 * 117.00227 * 179.97438 * 4 3 2 6 6 C 1.38847 * 119.91408 * 0.02688 * 5 4 3 7 7 C 1.37874 * 120.08916 * 179.97438 * 6 5 4 8 8 C 1.39556 * 119.91076 * 359.97438 * 7 6 5 9 9 C 1.47779 * 120.08307 * 180.02562 * 8 7 6 10 10 C 1.32600 * 119.99992 * 226.51125 * 9 8 7 11 11 Si 1.86792 * 119.99968 * 46.51239 * 9 8 7 12 12 C 1.86299 * 109.47247 * 1.49815 * 11 9 8 13 13 C 1.86306 * 109.47123 * 121.49814 * 11 9 8 14 14 C 1.86302 * 109.47166 * 241.49692 * 11 9 8 15 15 C 1.39598 * 119.83199 * 359.73191 * 8 7 6 16 16 C 1.37836 * 119.91063 * 0.53686 * 15 8 7 17 17 C 1.50698 * 119.95732 * 179.73013 * 16 15 8 18 18 O 1.42896 * 109.47476 * 254.72983 * 17 16 15 19 19 Si 1.86303 * 109.47132 * 14.73102 * 17 16 15 20 20 H 1.48504 * 109.47023 * 59.99762 * 19 17 16 21 21 H 1.48502 * 109.47221 * 299.99819 * 19 17 16 22 22 H 1.48501 * 109.47243 * 179.97438 * 19 17 16 23 23 H 4.38445 * 5.44435 * 179.97438 * 4 1 2 24 24 H 1.09004 * 109.46945 * 212.69307 * 3 2 1 25 25 H 1.08993 * 109.46979 * 92.68571 * 3 2 1 26 26 H 1.08000 * 119.95231 * 359.97438 * 6 5 4 27 27 H 1.07996 * 120.04246 * 180.02562 * 7 6 5 28 28 H 1.07992 * 120.00304 * 180.02562 * 10 9 8 29 29 H 1.08008 * 119.99674 * 0.02562 * 10 9 8 30 30 H 1.08997 * 109.47257 * 53.64416 * 12 11 9 31 31 H 1.09004 * 109.47272 * 173.64698 * 12 11 9 32 32 H 1.09003 * 109.46930 * 293.64846 * 12 11 9 33 33 H 1.09000 * 109.46878 * 60.00217 * 13 11 9 34 34 H 1.08997 * 109.46752 * 179.97438 * 13 11 9 35 35 H 1.08996 * 109.47063 * 300.00009 * 13 11 9 36 36 H 1.09006 * 109.46796 * 60.00043 * 14 11 9 37 37 H 1.09003 * 109.47291 * 180.02562 * 14 11 9 38 38 H 1.09000 * 109.47499 * 300.00189 * 14 11 9 39 39 H 1.08002 * 120.04662 * 180.27072 * 15 8 7 40 40 H 1.09003 * 109.47249 * 134.72925 * 17 16 15 41 41 H 0.96697 * 114.00093 * 300.00459 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1229 -1.1962 0.6182 5 6 4.4698 -1.3541 0.6995 6 6 5.3136 -0.3742 0.1937 7 6 6.6811 -0.5305 0.2747 8 6 7.2169 -1.6751 0.8665 9 6 8.6820 -1.8463 0.9558 10 6 9.2365 -3.0016 0.6154 11 14 9.7527 -0.4350 1.5483 12 6 8.6753 1.0200 1.9876 13 6 10.7131 -0.9728 3.0515 14 6 10.9377 0.0552 0.1970 15 6 6.3653 -2.6552 1.3794 16 6 4.9993 -2.4943 1.2896 17 6 4.0791 -3.5545 1.8375 18 8 3.5122 -4.2980 0.7569 19 14 5.0434 -4.7028 2.9431 20 1 5.6324 -3.9301 4.0661 21 1 6.1298 -5.3462 2.1614 22 1 4.1364 -5.7472 3.4835 23 1 -1.0498 -0.0003 0.0003 24 1 3.0090 0.8657 0.5551 25 1 3.0093 0.0490 -1.0265 26 1 4.8981 0.5115 -0.2638 27 1 7.3366 0.2323 -0.1186 28 1 10.3071 -3.1269 0.6811 29 1 8.6174 -3.8175 0.2724 30 1 7.9091 0.7042 2.6956 31 1 9.2866 1.8018 2.4384 32 1 8.1998 1.4053 1.0856 33 1 11.3435 -1.8240 2.7945 34 1 11.3382 -0.1494 3.3969 35 1 10.0198 -1.2596 3.8421 36 1 10.3758 0.3699 -0.6825 37 1 11.5629 0.8785 0.5429 38 1 11.5681 -0.7960 -0.0600 39 1 6.7762 -3.5404 1.8420 40 1 3.2816 -3.0823 2.4113 41 1 2.9952 -3.7627 0.1396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:06:51 Heat of formation + Delta-G solvation = -6.791850 kcal Electronic energy + Delta-G solvation = -20820.484576 eV Core-core repulsion = 17791.603535 eV Total energy + Delta-G solvation = -3028.881042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 290.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.50312 -39.03136 -37.68433 -34.79685 -34.01361 -32.81342 -30.07835 -29.41647 -28.67809 -28.27418 -28.05069 -26.63533 -24.01756 -22.82478 -20.32928 -19.46924 -19.31413 -18.30731 -17.24813 -17.13796 -16.69582 -16.24697 -15.63440 -15.38466 -15.09074 -14.88470 -14.55050 -14.12856 -14.02569 -13.77490 -13.72447 -13.70504 -13.37986 -13.19392 -13.15491 -13.00025 -12.84298 -12.61000 -12.47354 -12.27350 -11.88856 -11.73275 -11.33106 -11.25007 -11.12797 -11.04809 -10.74525 -10.71190 -10.24623 -9.99058 -8.86775 0.12062 0.21676 1.12052 1.22210 1.22979 1.42116 1.44236 1.72596 1.85742 1.87200 2.03047 2.23721 2.56161 2.63667 2.80417 3.37660 3.57447 3.77394 3.88661 3.94102 4.00665 4.23195 4.25789 4.30921 4.39462 4.59909 4.80846 4.83724 4.85855 4.87735 4.89517 4.90535 4.92942 4.93359 4.95264 5.07846 5.24274 5.41437 5.49250 5.59193 5.67838 5.68776 5.71856 5.90883 6.28677 6.49429 6.55808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.244 4.244 3 C 0.169 3.831 4 O -0.325 6.325 5 C 0.125 3.875 6 C -0.200 4.200 7 C -0.075 4.075 8 C -0.070 4.070 9 C -0.383 4.383 10 C -0.138 4.138 11 Si 1.105 2.895 12 C -0.458 4.458 13 C -0.463 4.463 14 C -0.456 4.456 15 C -0.101 4.101 16 C -0.155 4.155 17 C -0.086 4.086 18 O -0.552 6.552 19 Si 1.027 2.973 20 H -0.238 1.238 21 H -0.261 1.261 22 H -0.270 1.270 23 H 0.251 0.749 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.157 0.843 27 H 0.155 0.845 28 H 0.123 0.877 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.129 0.871 40 H 0.078 0.922 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.508 4.507 -0.771 4.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.244 4.244 3 C 0.096 3.904 4 O -0.239 6.239 5 C 0.080 3.920 6 C -0.219 4.219 7 C -0.092 4.092 8 C -0.070 4.070 9 C -0.422 4.422 10 C -0.175 4.175 11 Si 1.293 2.707 12 C -0.566 4.566 13 C -0.569 4.569 14 C -0.563 4.563 15 C -0.119 4.119 16 C -0.156 4.156 17 C -0.194 4.194 18 O -0.358 6.358 19 Si 0.848 3.152 20 H -0.161 1.161 21 H -0.185 1.185 22 H -0.195 1.195 23 H 0.267 0.733 24 H 0.121 0.879 25 H 0.122 0.878 26 H 0.175 0.825 27 H 0.173 0.827 28 H 0.141 0.859 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.146 0.854 40 H 0.096 0.904 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.061 3.290 0.100 3.884 hybrid contribution -1.047 0.628 -0.775 1.446 sum 1.015 3.918 -0.674 4.103 Atomic orbital electron populations 1.25901 0.96893 0.95573 0.98025 1.22764 0.94477 1.04171 1.02995 1.19500 0.84627 0.86674 0.99631 1.86016 1.19342 1.42146 1.76430 1.18843 0.82000 0.94356 0.96781 1.21501 0.94318 1.00480 1.05556 1.21433 0.94552 0.96749 0.96484 1.19071 0.93919 0.94402 0.99623 1.28437 0.98039 1.10571 1.05187 1.24460 1.01599 0.96042 0.95351 0.77514 0.64306 0.63027 0.65898 1.26354 1.09951 1.14520 1.05758 1.26288 1.08922 1.06195 1.15525 1.26215 1.11076 1.05864 1.13168 1.21234 0.91632 0.99051 1.00001 1.19598 0.94532 0.96115 1.05341 1.25252 1.00031 0.99010 0.95100 1.86636 1.71452 1.37930 1.39803 0.84314 0.77381 0.77072 0.76412 1.16122 1.18509 1.19516 0.73266 0.87914 0.87839 0.82542 0.82722 0.85862 0.89930 0.91798 0.90747 0.90340 0.91009 0.90659 0.91644 0.90932 0.90661 0.91119 0.85377 0.90420 0.77672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.04 19.25 74.32 1.43 1.47 16 2 C -0.24 -0.56 13.73 31.13 0.43 -0.13 16 3 C 0.17 -0.15 5.21 70.18 0.37 0.22 16 4 O -0.32 -1.27 8.97 -91.94 -0.82 -2.10 16 5 C 0.13 0.51 6.62 22.57 0.15 0.66 16 6 C -0.20 -0.01 9.02 22.33 0.20 0.19 16 7 C -0.07 0.01 8.21 22.50 0.18 0.20 16 8 C -0.07 -0.18 5.25 -20.11 -0.11 -0.29 16 9 C -0.38 0.22 4.41 23.64 0.10 0.32 16 10 C -0.14 0.08 13.31 66.66 0.89 0.97 16 11 Si 1.10 -5.93 11.67 68.60 0.80 -5.13 16 12 C -0.46 1.91 7.69 113.37 0.87 2.78 16 13 C -0.46 1.50 8.65 113.37 0.98 2.48 16 14 C -0.46 2.20 8.65 113.37 0.98 3.19 16 15 C -0.10 -0.56 7.94 22.50 0.18 -0.38 16 16 C -0.15 -0.94 5.28 -19.81 -0.10 -1.05 16 17 C -0.09 -0.52 2.33 71.24 0.17 -0.36 16 18 O -0.55 -4.39 12.65 -148.98 -1.89 -6.28 16 19 Si 1.03 5.18 25.73 68.60 1.77 6.95 16 20 H -0.24 -0.78 7.11 99.48 0.71 -0.07 16 21 H -0.26 -1.60 6.74 99.48 0.67 -0.93 16 22 H -0.27 -1.90 7.11 99.48 0.71 -1.19 16 23 H 0.25 -1.92 7.80 -4.43 -0.03 -1.96 16 24 H 0.10 -0.46 7.65 -2.39 -0.02 -0.48 16 25 H 0.10 -0.48 7.65 -2.39 -0.02 -0.50 16 26 H 0.16 -0.89 6.28 -2.91 -0.02 -0.91 16 27 H 0.16 -0.82 5.90 -2.91 -0.02 -0.84 16 28 H 0.12 -0.61 7.72 -2.91 -0.02 -0.63 16 29 H 0.08 0.13 7.85 -2.91 -0.02 0.10 16 30 H 0.06 -0.13 7.96 -2.39 -0.02 -0.15 16 31 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 32 H 0.08 -0.45 6.23 -2.39 -0.01 -0.46 16 33 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 34 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 35 H 0.06 -0.12 7.96 -2.39 -0.02 -0.14 16 36 H 0.07 -0.35 7.96 -2.38 -0.02 -0.37 16 37 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 38 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 39 H 0.13 0.60 4.76 -2.91 -0.01 0.59 16 40 H 0.08 0.38 7.82 -2.39 -0.02 0.36 16 41 H 0.37 1.57 8.59 -74.06 -0.64 0.94 16 Total: 0.00 -12.33 347.49 7.67 -4.66 By element: Atomic # 1 Polarization: -9.46 SS G_CDS: 1.10 Total: -8.36 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 6.72 Total: 10.26 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -2.71 Total: -8.37 kcal Atomic # 14 Polarization: -0.75 SS G_CDS: 2.57 Total: 1.82 kcal Total: -12.33 7.67 -4.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.136 kcal (2) G-P(sol) polarization free energy of solvation -12.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds