Wall clock time and date at job start Mon Mar 8 2021 08:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32557 * 1 3 3 C 1.47821 * 119.99834 * 2 1 4 4 C 1.39425 * 120.11697 * 245.68401 * 3 2 1 5 5 C 1.38501 * 119.80508 * 179.97438 * 4 3 2 6 6 O 1.35905 * 119.98810 * 180.02562 * 5 4 3 7 7 C 1.42905 * 117.00015 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47272 * 179.97438 * 7 6 5 9 9 O 1.42902 * 109.46876 * 64.99475 * 8 7 6 10 10 C 1.38812 * 120.02602 * 359.97438 * 5 4 3 11 11 C 1.38276 * 120.23047 * 359.79395 * 10 5 4 12 12 C 1.37987 * 120.19826 * 0.46260 * 11 10 5 13 13 C 1.50698 * 120.01124 * 179.79426 * 12 11 10 14 14 O 1.42903 * 109.46966 * 255.30245 * 13 12 11 15 15 Si 1.86292 * 109.47555 * 15.30619 * 13 12 11 16 16 H 1.48506 * 109.47315 * 59.99951 * 15 13 12 17 17 H 1.48500 * 109.47470 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47340 * 300.00210 * 15 13 12 19 19 Si 1.86799 * 120.00229 * 179.97438 * 2 1 3 20 20 C 1.86300 * 109.46979 * 175.12678 * 19 2 1 21 21 C 1.86302 * 109.47370 * 295.12535 * 19 2 1 22 22 C 1.86302 * 109.47196 * 55.12772 * 19 2 1 23 23 H 1.07995 * 120.00459 * 5.03641 * 1 2 3 24 24 H 1.08000 * 119.99972 * 185.03451 * 1 2 3 25 25 H 1.08005 * 120.09949 * 359.95419 * 4 3 2 26 26 H 1.09002 * 109.46918 * 299.99944 * 7 6 5 27 27 H 1.09007 * 109.46943 * 59.99763 * 7 6 5 28 28 H 1.08994 * 109.47229 * 184.99986 * 8 7 6 29 29 H 1.09003 * 109.47057 * 305.00136 * 8 7 6 30 30 H 0.96699 * 113.99644 * 180.02562 * 9 8 7 31 31 H 1.07999 * 119.88493 * 180.02562 * 10 5 4 32 32 H 1.07994 * 119.90165 * 180.23022 * 11 10 5 33 33 H 1.08998 * 109.47141 * 135.30853 * 13 12 11 34 34 H 0.96710 * 113.99537 * 60.00774 * 14 13 12 35 35 H 1.09003 * 109.47366 * 64.96047 * 20 19 2 36 36 H 1.09009 * 109.47071 * 184.95874 * 20 19 2 37 37 H 1.08994 * 109.47374 * 304.95543 * 20 19 2 38 38 H 1.09007 * 109.46614 * 59.99937 * 21 19 2 39 39 H 1.08990 * 109.47242 * 180.02562 * 21 19 2 40 40 H 1.09003 * 109.46865 * 300.00579 * 21 19 2 41 41 H 1.08994 * 109.46954 * 59.99679 * 22 19 2 42 42 H 1.08997 * 109.46836 * 179.97438 * 22 19 2 43 43 H 1.09004 * 109.46445 * 299.99914 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0646 1.2802 0.0000 4 6 2.8445 1.6378 -1.0990 5 6 3.5338 2.8390 -1.0924 6 8 4.2947 3.1915 -2.1619 7 6 4.9787 4.4440 -2.0869 8 6 5.7779 4.6664 -3.3725 9 8 4.8791 4.7919 -4.4764 10 6 3.4471 3.6836 0.0058 11 6 2.6702 3.3324 1.0945 12 6 1.9837 2.1355 1.1000 13 6 1.1420 1.7549 2.2907 14 8 1.8197 0.7538 3.0527 15 14 0.8554 3.2571 3.3545 16 1 0.1511 4.2974 2.5626 17 1 0.0265 2.8819 4.5281 18 1 2.1608 3.7896 3.8211 19 14 2.2596 -1.6177 0.0007 20 6 4.0857 -1.2804 -0.1486 21 6 1.9243 -2.5278 1.5914 22 6 1.7005 -2.6583 -1.4399 23 1 -0.5401 0.9316 -0.0821 24 1 -0.5400 -0.9317 0.0821 25 1 2.9111 0.9798 -1.9530 26 1 4.2525 5.2479 -1.9664 27 1 5.6576 4.4367 -1.2341 28 1 6.3690 5.5775 -3.2798 29 1 6.4416 3.8180 -3.5391 30 1 5.3176 4.9348 -5.3263 31 1 3.9852 4.6199 0.0084 32 1 2.6036 3.9952 1.9445 33 1 0.1838 1.3640 1.9483 34 1 2.6819 1.0331 3.3903 35 1 4.4305 -0.7473 0.7374 36 1 4.6236 -2.2244 -0.2368 37 1 4.2717 -0.6723 -1.0339 38 1 0.8558 -2.7251 1.6787 39 1 2.4697 -3.4714 1.5920 40 1 2.2515 -1.9188 2.4342 41 1 1.8967 -2.1259 -2.3704 42 1 2.2459 -3.6020 -1.4396 43 1 0.6320 -2.8556 -1.3524 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:07:02 Heat of formation + Delta-G solvation = -120.833401 kcal Electronic energy + Delta-G solvation = -22514.694331 eV Core-core repulsion = 19263.100547 eV Total energy + Delta-G solvation = -3251.593785 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25317 -39.45512 -37.72212 -36.94467 -34.65258 -32.38900 -30.57963 -30.48689 -29.39690 -28.28728 -28.16320 -26.35515 -24.78927 -23.15524 -22.40937 -20.71402 -18.79433 -18.47731 -18.20756 -17.07579 -16.73897 -16.56150 -16.23076 -15.75477 -15.43609 -15.15400 -14.93820 -14.83293 -14.49536 -14.05140 -13.89411 -13.80529 -13.68466 -13.59551 -13.38639 -13.18296 -13.10613 -13.04442 -12.93457 -12.60402 -12.24481 -12.15856 -12.02777 -11.79782 -11.58219 -11.14130 -11.07271 -10.81668 -10.75915 -10.27723 -10.16865 -9.46916 -9.01212 0.25483 0.43064 1.14511 1.22228 1.42261 1.54988 1.85467 1.94213 1.99334 2.15922 2.27520 2.65394 2.85446 3.11160 3.60896 3.72472 3.83576 3.92063 3.96920 4.01072 4.21997 4.28534 4.33119 4.50265 4.51974 4.63469 4.73754 4.79255 4.79470 4.85770 4.88750 4.90566 4.92318 5.00206 5.03642 5.22639 5.35475 5.40832 5.54876 5.60574 5.66034 5.73562 5.80981 5.90186 6.46501 6.57687 6.65501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.361 4.361 3 C 0.037 3.963 4 C -0.150 4.150 5 C 0.142 3.858 6 O -0.306 6.306 7 C 0.058 3.942 8 C 0.077 3.923 9 O -0.567 6.567 10 C -0.214 4.214 11 C -0.083 4.083 12 C -0.157 4.157 13 C -0.071 4.071 14 O -0.532 6.532 15 Si 0.940 3.060 16 H -0.251 1.251 17 H -0.253 1.253 18 H -0.253 1.253 19 Si 1.054 2.946 20 C -0.445 4.445 21 C -0.443 4.443 22 C -0.451 4.451 23 H 0.094 0.906 24 H 0.105 0.895 25 H 0.134 0.866 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.383 0.617 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.372 0.628 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.600 1.191 -0.226 2.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.402 4.402 3 C 0.036 3.964 4 C -0.168 4.168 5 C 0.096 3.904 6 O -0.219 6.219 7 C -0.018 4.018 8 C -0.001 4.001 9 O -0.373 6.373 10 C -0.233 4.233 11 C -0.100 4.100 12 C -0.158 4.158 13 C -0.182 4.182 14 O -0.337 6.337 15 Si 0.763 3.237 16 H -0.174 1.174 17 H -0.177 1.177 18 H -0.177 1.177 19 Si 1.245 2.755 20 C -0.553 4.553 21 C -0.551 4.551 22 C -0.558 4.558 23 H 0.112 0.888 24 H 0.123 0.877 25 H 0.152 0.848 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.231 0.769 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.219 0.781 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.470 1.469 0.434 2.123 hybrid contribution 1.047 0.596 -0.515 1.310 sum 2.517 2.065 -0.081 3.257 Atomic orbital electron populations 1.24123 0.95328 1.01824 0.95216 1.27854 1.00940 1.07674 1.03743 1.18516 0.93778 0.92658 0.91404 1.20481 1.00313 0.96083 0.99950 1.18928 0.91339 0.93816 0.86282 1.86148 1.59605 1.37907 1.38249 1.22910 0.96025 0.85182 0.97634 1.22197 0.91371 1.00600 0.85911 1.86556 1.36356 1.95963 1.18428 1.21151 1.05682 1.01398 0.95044 1.20800 0.95696 0.95723 0.97829 1.20197 1.02752 0.95314 0.97515 1.24875 0.98085 1.01572 0.93638 1.86524 1.36214 1.40213 1.70744 0.85866 0.81161 0.76767 0.79888 1.17437 1.17729 1.17696 0.78296 0.66280 0.63417 0.67534 1.26117 1.19684 1.04749 1.04754 1.26056 1.04747 1.07732 1.16531 1.26174 1.05920 1.09402 1.14288 0.88798 0.87655 0.84831 0.91087 0.90401 0.91260 0.92283 0.76901 0.85443 0.85856 0.86582 0.78107 0.91161 0.91344 0.91162 0.91465 0.91551 0.90201 0.91170 0.91031 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.01 11.82 28.82 0.34 0.35 16 2 C -0.36 -0.18 3.54 -37.57 -0.13 -0.31 16 3 C 0.04 0.07 4.83 -105.04 -0.51 -0.44 16 4 C -0.15 -0.38 8.42 -39.04 -0.33 -0.70 16 5 C 0.14 0.40 6.68 -39.27 -0.26 0.14 16 6 O -0.31 -0.96 10.10 -24.29 -0.25 -1.21 16 7 C 0.06 0.00 5.12 37.16 0.19 0.20 16 8 C 0.08 -0.08 7.43 37.16 0.28 0.20 16 9 O -0.57 -0.54 13.62 -40.08 -0.55 -1.09 16 10 C -0.21 -0.34 9.03 -39.36 -0.36 -0.69 16 11 C -0.08 -0.10 8.65 -39.66 -0.34 -0.45 16 12 C -0.16 -0.22 5.27 -104.22 -0.55 -0.77 16 13 C -0.07 -0.03 2.12 36.00 0.08 0.05 16 14 O -0.53 -0.12 12.85 -35.23 -0.45 -0.57 16 15 Si 0.94 0.20 25.50 -169.99 -4.34 -4.14 16 16 H -0.25 -0.29 7.11 56.52 0.40 0.11 16 17 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 18 H -0.25 0.01 6.72 56.52 0.38 0.39 16 19 Si 1.05 -0.96 12.17 -169.99 -2.07 -3.03 16 20 C -0.45 -0.05 8.31 101.05 0.84 0.79 16 21 C -0.44 0.03 8.65 101.05 0.87 0.90 16 22 C -0.45 0.22 8.65 101.05 0.87 1.09 16 23 H 0.09 -0.01 7.87 -52.49 -0.41 -0.42 16 24 H 0.11 -0.18 7.73 -52.49 -0.41 -0.58 16 25 H 0.13 0.24 7.89 -52.48 -0.41 -0.17 16 26 H 0.07 0.00 7.65 -51.93 -0.40 -0.39 16 27 H 0.08 -0.16 7.66 -51.93 -0.40 -0.55 16 28 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 29 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 30 H 0.38 -1.38 9.12 45.56 0.42 -0.96 16 31 H 0.13 -0.05 6.28 -52.49 -0.33 -0.38 16 32 H 0.12 -0.02 4.88 -52.49 -0.26 -0.28 16 33 H 0.12 0.01 5.84 -51.93 -0.30 -0.29 16 34 H 0.37 -1.01 8.70 45.56 0.40 -0.62 16 35 H 0.07 0.03 7.96 -51.93 -0.41 -0.38 16 36 H 0.07 -0.02 7.96 -51.92 -0.41 -0.43 16 37 H 0.07 0.04 7.08 -51.93 -0.37 -0.33 16 38 H 0.07 -0.01 7.96 -51.92 -0.41 -0.42 16 39 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 40 H 0.08 0.05 7.96 -51.93 -0.41 -0.36 16 41 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 42 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 43 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 LS Contribution 354.40 15.07 5.34 5.34 Total: 0.00 -6.60 354.40 -6.76 -13.36 By element: Atomic # 1 Polarization: -3.58 SS G_CDS: -5.44 Total: -9.02 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 0.99 Total: 0.35 kcal Atomic # 8 Polarization: -1.62 SS G_CDS: -1.24 Total: -2.87 kcal Atomic # 14 Polarization: -0.76 SS G_CDS: -6.40 Total: -7.17 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -6.60 -6.76 -13.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.471 kcal (2) G-P(sol) polarization free energy of solvation -6.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds