Wall clock time and date at job start Mon Mar 8 2021 08:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32557 * 1 3 3 C 1.47821 * 119.99834 * 2 1 4 4 C 1.39425 * 120.11697 * 245.68401 * 3 2 1 5 5 C 1.38501 * 119.80508 * 179.97438 * 4 3 2 6 6 O 1.35905 * 119.98810 * 180.02562 * 5 4 3 7 7 C 1.42905 * 117.00015 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47272 * 179.97438 * 7 6 5 9 9 O 1.42902 * 109.46876 * 64.99475 * 8 7 6 10 10 C 1.38812 * 120.02602 * 359.97438 * 5 4 3 11 11 C 1.38276 * 120.23047 * 359.79395 * 10 5 4 12 12 C 1.37987 * 120.19826 * 0.46260 * 11 10 5 13 13 C 1.50698 * 120.01124 * 179.79426 * 12 11 10 14 14 O 1.42903 * 109.46966 * 255.30245 * 13 12 11 15 15 Si 1.86292 * 109.47555 * 15.30619 * 13 12 11 16 16 H 1.48506 * 109.47315 * 59.99951 * 15 13 12 17 17 H 1.48500 * 109.47470 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47340 * 300.00210 * 15 13 12 19 19 Si 1.86799 * 120.00229 * 179.97438 * 2 1 3 20 20 C 1.86300 * 109.46979 * 175.12678 * 19 2 1 21 21 C 1.86302 * 109.47370 * 295.12535 * 19 2 1 22 22 C 1.86302 * 109.47196 * 55.12772 * 19 2 1 23 23 H 1.07995 * 120.00459 * 5.03641 * 1 2 3 24 24 H 1.08000 * 119.99972 * 185.03451 * 1 2 3 25 25 H 1.08005 * 120.09949 * 359.95419 * 4 3 2 26 26 H 1.09002 * 109.46918 * 299.99944 * 7 6 5 27 27 H 1.09007 * 109.46943 * 59.99763 * 7 6 5 28 28 H 1.08994 * 109.47229 * 184.99986 * 8 7 6 29 29 H 1.09003 * 109.47057 * 305.00136 * 8 7 6 30 30 H 0.96699 * 113.99644 * 180.02562 * 9 8 7 31 31 H 1.07999 * 119.88493 * 180.02562 * 10 5 4 32 32 H 1.07994 * 119.90165 * 180.23022 * 11 10 5 33 33 H 1.08998 * 109.47141 * 135.30853 * 13 12 11 34 34 H 0.96710 * 113.99537 * 60.00774 * 14 13 12 35 35 H 1.09003 * 109.47366 * 64.96047 * 20 19 2 36 36 H 1.09009 * 109.47071 * 184.95874 * 20 19 2 37 37 H 1.08994 * 109.47374 * 304.95543 * 20 19 2 38 38 H 1.09007 * 109.46614 * 59.99937 * 21 19 2 39 39 H 1.08990 * 109.47242 * 180.02562 * 21 19 2 40 40 H 1.09003 * 109.46865 * 300.00579 * 21 19 2 41 41 H 1.08994 * 109.46954 * 59.99679 * 22 19 2 42 42 H 1.08997 * 109.46836 * 179.97438 * 22 19 2 43 43 H 1.09004 * 109.46445 * 299.99914 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0646 1.2802 0.0000 4 6 2.8445 1.6378 -1.0990 5 6 3.5338 2.8390 -1.0924 6 8 4.2947 3.1915 -2.1619 7 6 4.9787 4.4440 -2.0869 8 6 5.7779 4.6664 -3.3725 9 8 4.8791 4.7919 -4.4764 10 6 3.4471 3.6836 0.0058 11 6 2.6702 3.3324 1.0945 12 6 1.9837 2.1355 1.1000 13 6 1.1420 1.7549 2.2907 14 8 1.8197 0.7538 3.0527 15 14 0.8554 3.2571 3.3545 16 1 0.1511 4.2974 2.5626 17 1 0.0265 2.8819 4.5281 18 1 2.1608 3.7896 3.8211 19 14 2.2596 -1.6177 0.0007 20 6 4.0857 -1.2804 -0.1486 21 6 1.9243 -2.5278 1.5914 22 6 1.7005 -2.6583 -1.4399 23 1 -0.5401 0.9316 -0.0821 24 1 -0.5400 -0.9317 0.0821 25 1 2.9111 0.9798 -1.9530 26 1 4.2525 5.2479 -1.9664 27 1 5.6576 4.4367 -1.2341 28 1 6.3690 5.5775 -3.2798 29 1 6.4416 3.8180 -3.5391 30 1 5.3176 4.9348 -5.3263 31 1 3.9852 4.6199 0.0084 32 1 2.6036 3.9952 1.9445 33 1 0.1838 1.3640 1.9483 34 1 2.6819 1.0331 3.3903 35 1 4.4305 -0.7473 0.7374 36 1 4.6236 -2.2244 -0.2368 37 1 4.2717 -0.6723 -1.0339 38 1 0.8558 -2.7251 1.6787 39 1 2.4697 -3.4714 1.5920 40 1 2.2515 -1.9188 2.4342 41 1 1.8967 -2.1259 -2.3704 42 1 2.2459 -3.6020 -1.4396 43 1 0.6320 -2.8556 -1.3524 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 08:07:01 Heat of formation + Delta-G solvation = -117.092806 kcal Electronic energy + Delta-G solvation = -22514.532127 eV Core-core repulsion = 19263.100547 eV Total energy + Delta-G solvation = -3251.431580 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.32732 -39.50024 -37.69786 -36.96477 -34.67472 -32.43575 -30.57114 -30.52661 -29.37612 -28.24647 -28.15738 -26.39742 -24.80125 -23.16188 -22.45739 -20.74775 -18.77397 -18.49976 -18.22398 -17.14347 -16.78168 -16.58829 -16.23999 -15.77137 -15.43369 -15.13500 -14.94005 -14.85727 -14.53672 -14.02373 -13.92377 -13.80060 -13.67333 -13.61842 -13.38454 -13.14324 -13.10299 -13.02774 -12.93005 -12.59351 -12.27066 -12.17711 -12.08294 -11.83221 -11.60679 -11.07444 -11.04043 -10.82598 -10.74301 -10.29420 -10.17251 -9.54803 -9.10000 0.17865 0.32319 1.14425 1.21030 1.39922 1.51093 1.88508 1.90544 2.04035 2.15956 2.31274 2.63163 2.81254 3.26745 3.64172 3.70319 3.84486 3.89652 4.00128 4.08495 4.22248 4.35574 4.40497 4.45977 4.58227 4.68660 4.71790 4.83084 4.84002 4.86275 4.87832 4.92060 4.94371 4.96692 5.01608 5.15248 5.29748 5.37070 5.53313 5.58521 5.65661 5.74545 5.77956 5.89030 6.39757 6.79873 6.82571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.377 4.377 3 C 0.032 3.968 4 C -0.165 4.165 5 C 0.126 3.874 6 O -0.327 6.327 7 C 0.048 3.952 8 C 0.074 3.926 9 O -0.596 6.596 10 C -0.219 4.219 11 C -0.088 4.088 12 C -0.163 4.163 13 C -0.069 4.069 14 O -0.541 6.541 15 Si 0.969 3.031 16 H -0.265 1.265 17 H -0.272 1.272 18 H -0.245 1.245 19 Si 1.104 2.896 20 C -0.457 4.457 21 C -0.451 4.451 22 C -0.459 4.459 23 H 0.091 0.909 24 H 0.123 0.877 25 H 0.132 0.868 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.399 0.601 31 H 0.145 0.855 32 H 0.138 0.862 33 H 0.117 0.883 34 H 0.385 0.615 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.831 1.232 0.161 3.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.417 4.417 3 C 0.032 3.968 4 C -0.184 4.184 5 C 0.081 3.919 6 O -0.241 6.241 7 C -0.027 4.027 8 C -0.003 4.003 9 O -0.405 6.405 10 C -0.238 4.238 11 C -0.106 4.106 12 C -0.164 4.164 13 C -0.180 4.180 14 O -0.347 6.347 15 Si 0.794 3.206 16 H -0.189 1.189 17 H -0.197 1.197 18 H -0.169 1.169 19 Si 1.291 2.709 20 C -0.564 4.564 21 C -0.558 4.558 22 C -0.566 4.566 23 H 0.109 0.891 24 H 0.141 0.859 25 H 0.150 0.850 26 H 0.086 0.914 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.250 0.750 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.135 0.865 34 H 0.233 0.767 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.733 1.522 0.813 2.445 hybrid contribution 0.983 0.600 -0.647 1.321 sum 2.716 2.122 0.166 3.451 Atomic orbital electron populations 1.24317 0.95259 1.02577 0.94481 1.28137 1.01354 1.07815 1.04388 1.18694 0.93658 0.93231 0.91260 1.20620 1.00999 0.96395 1.00356 1.19130 0.91767 0.94277 0.86753 1.86121 1.59992 1.39299 1.38708 1.23194 0.96309 0.84006 0.99185 1.22358 0.91034 1.01973 0.84928 1.86504 1.38001 1.96123 1.19885 1.21368 1.05806 1.01898 0.94695 1.21018 0.95450 0.95912 0.98205 1.20383 1.02838 0.95391 0.97768 1.24885 0.97987 1.01766 0.93336 1.86494 1.37145 1.40415 1.70683 0.85460 0.80764 0.75908 0.78517 1.18915 1.19706 1.16860 0.77527 0.64627 0.62098 0.66604 1.26275 1.21181 1.04738 1.04162 1.26153 1.04946 1.07960 1.16742 1.26264 1.06377 1.09660 1.14328 0.89084 0.85944 0.85024 0.91368 0.88401 0.88585 0.92048 0.75029 0.83771 0.84486 0.86547 0.76661 0.91673 0.90949 0.91864 0.91245 0.91216 0.90879 0.91480 0.90707 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.02 11.82 66.67 0.79 0.81 16 2 C -0.38 -0.51 3.54 23.66 0.08 -0.42 16 3 C 0.03 0.14 4.83 -20.13 -0.10 0.04 16 4 C -0.17 -1.05 8.42 22.62 0.19 -0.86 16 5 C 0.13 0.85 6.68 22.47 0.15 1.00 16 6 O -0.33 -2.43 10.10 -87.84 -0.89 -3.31 16 7 C 0.05 0.02 5.12 71.98 0.37 0.39 16 8 C 0.07 -0.16 7.43 71.98 0.53 0.37 16 9 O -0.60 -1.40 13.62 -144.34 -1.97 -3.37 16 10 C -0.22 -0.76 9.03 22.42 0.20 -0.56 16 11 C -0.09 -0.23 8.65 22.22 0.19 -0.03 16 12 C -0.16 -0.52 5.27 -19.60 -0.10 -0.62 16 13 C -0.07 -0.06 2.12 71.24 0.15 0.10 16 14 O -0.54 -0.15 12.85 -148.98 -1.91 -2.06 16 15 Si 0.97 0.29 25.50 68.60 1.75 2.04 16 16 H -0.26 -0.67 7.11 99.48 0.71 0.04 16 17 H -0.27 -0.91 7.11 99.48 0.71 -0.20 16 18 H -0.24 0.27 6.72 99.48 0.67 0.94 16 19 Si 1.10 -1.86 12.17 68.60 0.84 -1.03 16 20 C -0.46 -0.42 8.31 113.37 0.94 0.52 16 21 C -0.45 0.17 8.65 113.37 0.98 1.15 16 22 C -0.46 0.53 8.65 113.37 0.98 1.51 16 23 H 0.09 0.01 7.87 -2.91 -0.02 -0.01 16 24 H 0.12 -0.49 7.73 -2.91 -0.02 -0.52 16 25 H 0.13 0.73 7.89 -2.91 -0.02 0.71 16 26 H 0.07 0.04 7.65 -2.39 -0.02 0.02 16 27 H 0.10 -0.42 7.66 -2.38 -0.02 -0.44 16 28 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 29 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.40 -2.73 9.12 -74.06 -0.68 -3.41 16 31 H 0.14 -0.14 6.28 -2.91 -0.02 -0.16 16 32 H 0.14 -0.13 4.88 -2.91 -0.01 -0.14 16 33 H 0.12 0.05 5.84 -2.39 -0.01 0.04 16 34 H 0.38 -2.22 8.70 -74.05 -0.64 -2.86 16 35 H 0.06 0.12 7.96 -2.39 -0.02 0.10 16 36 H 0.07 -0.01 7.96 -2.38 -0.02 -0.03 16 37 H 0.06 0.15 7.08 -2.39 -0.02 0.13 16 38 H 0.07 -0.05 7.96 -2.38 -0.02 -0.07 16 39 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 40 H 0.07 0.09 7.96 -2.39 -0.02 0.07 16 41 H 0.07 -0.02 7.96 -2.39 -0.02 -0.04 16 42 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 43 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 Total: 0.00 -15.15 354.40 3.59 -11.56 By element: Atomic # 1 Polarization: -7.62 SS G_CDS: 0.40 Total: -7.22 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 5.36 Total: 3.39 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -4.77 Total: -8.75 kcal Atomic # 14 Polarization: -1.57 SS G_CDS: 2.58 Total: 1.01 kcal Total: -15.15 3.59 -11.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.531 kcal (2) G-P(sol) polarization free energy of solvation -15.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds