Wall clock time and date at job start Mon Mar 8 2021 10:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32595 * 1 3 3 C 1.47776 * 119.99866 * 2 1 4 4 C 1.39560 * 120.08033 * 180.02562 * 3 2 1 5 5 C 1.37882 * 119.90733 * 179.70330 * 4 3 2 6 6 C 1.38836 * 120.08776 * 0.52470 * 5 4 3 7 7 O 1.35863 * 119.91570 * 179.76499 * 6 5 4 8 8 C 1.42908 * 116.99970 * 359.73090 * 7 6 5 9 9 C 1.50692 * 109.47246 * 179.97438 * 8 7 6 10 10 C 1.38184 * 119.61840 * 0.02562 * 9 8 7 11 11 C 1.38675 * 119.16617 * 179.97438 * 10 9 8 12 12 C 1.38631 * 118.41792 * 359.97438 * 11 10 9 13 13 C 1.38221 * 119.16077 * 0.25627 * 12 11 10 14 14 N 1.31861 * 120.76518 * 359.45246 * 13 12 11 15 15 C 1.38886 * 120.17076 * 359.49249 * 6 5 4 16 16 C 1.50696 * 119.95293 * 180.25277 * 15 6 5 17 17 O 1.42901 * 109.47217 * 284.99918 * 16 15 6 18 18 Si 1.86298 * 109.46851 * 165.00344 * 16 15 6 19 19 H 1.48500 * 109.47263 * 59.99802 * 18 16 15 20 20 H 1.48505 * 109.47370 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47068 * 299.99881 * 18 16 15 22 22 C 1.37830 * 120.08533 * 0.23195 * 15 6 5 23 23 Si 1.86796 * 120.00045 * 180.02562 * 2 1 3 24 24 C 1.86295 * 109.47298 * 240.00020 * 23 2 1 25 25 C 1.86302 * 109.47106 * 359.97438 * 23 2 1 26 26 C 1.86302 * 109.47325 * 119.99625 * 23 2 1 27 27 H 1.07995 * 120.00399 * 180.02562 * 1 2 3 28 28 H 1.08006 * 119.99788 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.04709 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.95567 * 180.29580 * 5 4 3 31 31 H 1.09000 * 109.46702 * 59.99566 * 8 7 6 32 32 H 1.08998 * 109.46700 * 299.99515 * 8 7 6 33 33 H 1.08006 * 120.42016 * 359.97438 * 10 9 8 34 34 H 1.07997 * 120.79161 * 180.02562 * 11 10 9 35 35 H 1.08002 * 120.41548 * 179.97438 * 12 11 10 36 36 H 1.08002 * 119.62066 * 179.74470 * 13 12 11 37 37 H 1.08995 * 109.47506 * 44.99853 * 16 15 6 38 38 H 0.96695 * 114.00288 * 60.00079 * 17 16 15 39 39 H 1.07993 * 120.04239 * 179.97438 * 22 15 6 40 40 H 1.09001 * 109.47575 * 59.99501 * 24 23 2 41 41 H 1.08994 * 109.47169 * 180.02562 * 24 23 2 42 42 H 1.08999 * 109.46791 * 299.99886 * 24 23 2 43 43 H 1.09004 * 109.47309 * 59.99559 * 25 23 2 44 44 H 1.08999 * 109.47391 * 179.97438 * 25 23 2 45 45 H 1.09008 * 109.47198 * 300.00160 * 25 23 2 46 46 H 1.08999 * 109.46957 * 59.99996 * 26 23 2 47 47 H 1.08999 * 109.47388 * 180.02562 * 26 23 2 48 48 H 1.09004 * 109.46731 * 300.00221 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3259 0.0000 0.0000 3 6 2.0648 1.2798 0.0000 4 6 3.4604 1.2818 -0.0005 5 6 4.1462 2.4780 -0.0067 6 6 3.4502 3.6793 -0.0014 7 8 4.1295 4.8559 -0.0027 8 6 5.5566 4.7811 -0.0037 9 6 6.1326 6.1736 -0.0057 10 6 5.2836 7.2638 -0.0058 11 6 5.8237 8.5411 -0.0071 12 6 7.2037 8.6738 -0.0077 13 6 7.9896 7.5368 -0.0124 14 7 7.4412 6.3377 -0.0054 15 6 2.0614 3.6814 -0.0005 16 6 1.3109 4.9882 -0.0005 17 8 1.3769 5.5754 1.3006 18 14 -0.4699 4.6816 -0.4537 19 1 -1.0812 3.7596 0.5371 20 1 -1.2097 5.9692 -0.4531 21 1 -0.5386 4.0713 -1.8057 22 6 1.3686 2.4898 0.0000 23 14 2.2599 -1.6177 -0.0007 24 6 3.3310 -1.7171 1.5203 25 6 1.0493 -3.0337 -0.0006 26 6 3.3310 -1.7158 -1.5220 27 1 -0.5400 -0.9352 0.0004 28 1 -0.5400 0.9354 0.0004 29 1 4.0025 0.3477 -0.0005 30 1 5.2262 2.4804 -0.0120 31 1 5.8919 4.2483 -0.8935 32 1 5.8931 4.2497 0.8865 33 1 4.2127 7.1231 -0.0048 34 1 5.1846 9.4116 -0.0068 35 1 7.6588 9.6532 -0.0091 36 1 9.0655 7.6316 -0.0171 37 1 1.7596 5.6649 -0.7276 38 1 2.2763 5.7629 1.6024 39 1 0.2887 2.4922 0.0011 40 1 2.7044 -1.6597 2.4104 41 1 3.8763 -2.6608 1.5196 42 1 4.0393 -0.8886 1.5206 43 1 0.4222 -2.9758 -0.8903 44 1 1.5943 -3.9777 -0.0015 45 1 0.4229 -2.9762 0.8897 46 1 4.0393 -0.8873 -1.5216 47 1 3.8756 -2.6600 -1.5226 48 1 2.7042 -1.6577 -2.4119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419802.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:05:06 Heat of formation + Delta-G solvation = -22.306440 kcal Electronic energy + Delta-G solvation = -27361.774563 eV Core-core repulsion = 23699.267328 eV Total energy + Delta-G solvation = -3662.507235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 343.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.73120 -40.98592 -38.95976 -37.68461 -34.61921 -33.66183 -33.06108 -32.75875 -29.92745 -29.47796 -28.46316 -28.28372 -27.97930 -26.69753 -24.68766 -24.26748 -23.16570 -22.37623 -20.24494 -19.42650 -18.40873 -18.11823 -17.27188 -17.10069 -17.08770 -16.62378 -16.39196 -16.06712 -15.64700 -15.28952 -15.01848 -14.95481 -14.66613 -14.23654 -14.17583 -14.04307 -13.92896 -13.90730 -13.69113 -13.42797 -13.28170 -13.15861 -13.05975 -12.98659 -12.70844 -12.65732 -12.55267 -12.45844 -12.30493 -11.88408 -11.32605 -11.24415 -11.11919 -10.87922 -10.78884 -10.63170 -10.51075 -10.45106 -10.04643 -9.96453 -8.79435 -0.05220 0.06186 0.17947 0.27633 1.12589 1.33178 1.43372 1.44015 1.76699 1.82041 1.87118 1.98370 2.19940 2.64718 2.73996 2.82788 3.29785 3.54123 3.70688 3.75716 3.87204 3.90842 3.94017 4.02985 4.13458 4.18601 4.19770 4.22484 4.29638 4.40372 4.52734 4.61409 4.78088 4.81005 4.82536 4.83050 4.84160 4.86378 4.88812 4.89579 4.92355 5.03880 5.12147 5.17333 5.26638 5.31448 5.44330 5.57868 5.66288 5.66746 5.69445 5.70440 5.90925 6.23968 6.60016 6.88864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.382 4.382 3 C -0.071 4.071 4 C -0.083 4.083 5 C -0.201 4.201 6 C 0.132 3.868 7 O -0.314 6.314 8 C 0.116 3.884 9 C 0.103 3.897 10 C -0.161 4.161 11 C -0.079 4.079 12 C -0.171 4.171 13 C 0.091 3.909 14 N -0.507 5.507 15 C -0.149 4.149 16 C -0.083 4.083 17 O -0.549 6.549 18 Si 1.023 2.977 19 H -0.263 1.263 20 H -0.267 1.267 21 H -0.243 1.243 22 C -0.105 4.105 23 Si 1.098 2.902 24 C -0.462 4.462 25 C -0.460 4.460 26 C -0.461 4.461 27 H 0.125 0.875 28 H 0.085 0.915 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.148 0.852 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.180 0.820 37 H 0.086 0.914 38 H 0.376 0.624 39 H 0.132 0.868 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.003 -0.451 -1.107 2.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.422 4.422 3 C -0.071 4.071 4 C -0.100 4.100 5 C -0.219 4.219 6 C 0.086 3.914 7 O -0.227 6.227 8 C 0.040 3.960 9 C -0.033 4.033 10 C -0.181 4.181 11 C -0.105 4.105 12 C -0.191 4.191 13 C -0.066 4.066 14 N -0.218 5.218 15 C -0.150 4.150 16 C -0.191 4.191 17 O -0.356 6.356 18 Si 0.844 3.156 19 H -0.187 1.187 20 H -0.192 1.192 21 H -0.166 1.166 22 C -0.122 4.122 23 Si 1.287 2.713 24 C -0.569 4.569 25 C -0.567 4.567 26 C -0.568 4.568 27 H 0.143 0.857 28 H 0.104 0.896 29 H 0.170 0.830 30 H 0.170 0.830 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.166 0.834 34 H 0.176 0.824 35 H 0.180 0.820 36 H 0.197 0.803 37 H 0.104 0.896 38 H 0.225 0.775 39 H 0.149 0.851 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.938 -1.109 -1.367 1.995 hybrid contribution 0.672 1.072 0.246 1.289 sum 1.610 -0.037 -1.121 1.962 Atomic orbital electron populations 1.24601 0.96080 1.02573 0.95315 1.28522 1.01495 1.08688 1.03468 1.19069 0.93482 0.93074 1.01513 1.21485 0.93180 0.98670 0.96713 1.21490 1.01505 0.91609 1.07318 1.18781 0.90589 0.84834 0.97147 1.85864 1.19767 1.28252 1.88812 1.21183 0.77484 0.93292 1.04005 1.20777 0.89687 0.95108 0.97775 1.22083 1.02293 0.92965 1.00723 1.22032 0.95998 0.98132 0.94329 1.22548 0.94651 1.01522 1.00336 1.23176 1.01866 0.86852 0.94720 1.67176 1.12556 1.28426 1.13611 1.19593 0.91207 0.96453 1.07779 1.25195 1.12993 0.92216 0.88693 1.86658 1.33708 1.82906 1.32349 0.84360 0.72050 0.79616 0.79533 1.18747 1.19151 1.16565 1.21305 1.00167 0.91613 0.99162 0.77615 0.65290 0.61762 0.66642 1.26337 1.10004 1.04937 1.15589 1.26241 1.11667 1.14056 1.04771 1.26320 1.09976 1.04955 1.15504 0.85670 0.89645 0.82984 0.82991 0.88925 0.88799 0.83438 0.82375 0.81969 0.80349 0.89598 0.77520 0.85090 0.91420 0.90380 0.91057 0.90845 0.90457 0.90933 0.91003 0.90384 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.04 13.39 66.66 0.89 0.86 16 2 C -0.38 -0.22 4.70 23.64 0.11 -0.11 16 3 C -0.07 -0.26 5.84 -20.11 -0.12 -0.38 16 4 C -0.08 -0.10 8.70 22.50 0.20 0.10 16 5 C -0.20 -0.24 9.02 22.33 0.20 -0.04 16 6 C 0.13 0.45 6.62 22.57 0.15 0.60 16 7 O -0.31 -0.56 7.47 -92.01 -0.69 -1.25 16 8 C 0.12 0.05 5.28 71.23 0.38 0.43 16 9 C 0.10 0.35 6.78 42.54 0.29 0.63 16 10 C -0.16 -0.21 9.41 22.36 0.21 0.00 16 11 C -0.08 0.11 10.18 22.47 0.23 0.34 16 12 C -0.17 0.36 10.11 22.36 0.23 0.58 16 13 C 0.09 0.06 11.18 84.68 0.95 1.01 16 14 N -0.51 -2.51 10.27 -183.89 -1.89 -4.40 16 15 C -0.15 -0.75 5.27 -19.81 -0.10 -0.86 16 16 C -0.08 -0.31 2.33 71.23 0.17 -0.15 16 17 O -0.55 -2.85 12.65 -148.98 -1.89 -4.74 16 18 Si 1.02 3.90 25.74 68.60 1.77 5.66 16 19 H -0.26 -1.40 6.73 99.48 0.67 -0.73 16 20 H -0.27 -1.46 7.11 99.48 0.71 -0.75 16 21 H -0.24 -0.65 7.11 99.48 0.71 0.05 16 22 C -0.10 -0.58 8.00 22.50 0.18 -0.40 16 23 Si 1.10 -5.04 10.79 68.60 0.74 -4.30 16 24 C -0.46 1.46 8.65 113.37 0.98 2.44 16 25 C -0.46 1.87 7.86 113.37 0.89 2.76 16 26 C -0.46 1.62 8.65 113.37 0.98 2.61 16 27 H 0.13 -0.47 7.05 -2.91 -0.02 -0.49 16 28 H 0.09 0.10 6.03 -2.91 -0.02 0.09 16 29 H 0.15 -0.53 3.69 -2.91 -0.01 -0.54 16 30 H 0.15 -0.49 6.28 -2.91 -0.02 -0.51 16 31 H 0.09 -0.09 7.64 -2.39 -0.02 -0.11 16 32 H 0.09 -0.11 7.67 -2.39 -0.02 -0.13 16 33 H 0.15 -0.06 7.00 -2.91 -0.02 -0.08 16 34 H 0.16 -0.98 8.06 -2.91 -0.02 -1.01 16 35 H 0.16 -1.24 8.06 -2.91 -0.02 -1.26 16 36 H 0.18 -0.80 8.06 -2.91 -0.02 -0.82 16 37 H 0.09 0.11 7.82 -2.39 -0.02 0.09 16 38 H 0.38 0.33 8.59 -74.06 -0.64 -0.31 16 39 H 0.13 0.59 2.98 -2.91 -0.01 0.58 16 40 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 41 H 0.08 -0.33 7.96 -2.39 -0.02 -0.35 16 42 H 0.07 -0.23 6.57 -2.39 -0.02 -0.24 16 43 H 0.07 -0.31 7.96 -2.38 -0.02 -0.33 16 44 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 45 H 0.07 -0.29 7.96 -2.38 -0.02 -0.31 16 46 H 0.07 -0.26 6.57 -2.39 -0.02 -0.27 16 47 H 0.08 -0.36 7.96 -2.39 -0.02 -0.38 16 48 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 Total: 0.00 -13.05 387.66 5.91 -7.14 By element: Atomic # 1 Polarization: -9.60 SS G_CDS: 1.06 Total: -8.54 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 6.80 Total: 10.42 kcal Atomic # 7 Polarization: -2.51 SS G_CDS: -1.89 Total: -4.40 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -2.57 Total: -5.98 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: 2.51 Total: 1.36 kcal Total: -13.05 5.91 -7.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419802.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.169 kcal (2) G-P(sol) polarization free energy of solvation -13.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds