Wall clock time and date at job start Mon Mar 8 2021 10:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32590 * 1 3 3 C 1.47774 * 119.99761 * 2 1 4 4 C 1.39559 * 120.08362 * 244.00067 * 3 2 1 5 5 C 1.37881 * 119.91380 * 179.97438 * 4 3 2 6 6 C 1.38831 * 120.08602 * 359.97438 * 5 4 3 7 7 O 1.35862 * 119.91490 * 180.02562 * 6 5 4 8 8 C 1.42894 * 116.99948 * 359.97438 * 7 6 5 9 9 C 1.38893 * 120.17015 * 359.74869 * 6 5 4 10 10 C 1.37829 * 120.08490 * 0.50625 * 9 6 5 11 11 C 1.50695 * 120.04192 * 179.77052 * 10 9 6 12 12 O 1.42899 * 109.47460 * 255.54733 * 11 10 9 13 13 Si 1.86306 * 109.47201 * 15.54618 * 11 10 9 14 14 H 1.48497 * 109.46866 * 60.00137 * 13 11 10 15 15 H 1.48494 * 109.46863 * 300.00170 * 13 11 10 16 16 H 1.48496 * 109.47042 * 180.02562 * 13 11 10 17 17 Si 1.86797 * 120.00124 * 179.97438 * 2 1 3 18 18 C 1.86299 * 109.47454 * 240.00168 * 17 2 1 19 19 C 1.86308 * 109.46980 * 0.02562 * 17 2 1 20 20 C 1.86298 * 109.47059 * 119.99987 * 17 2 1 21 21 H 1.08001 * 120.00516 * 175.13866 * 1 2 3 22 22 H 1.08006 * 120.00423 * 355.13936 * 1 2 3 23 23 H 1.08000 * 120.04222 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.95261 * 180.02562 * 5 4 3 25 25 H 1.09000 * 109.47443 * 180.02562 * 8 7 6 26 26 H 1.09001 * 109.47450 * 300.00683 * 8 7 6 27 27 H 1.09000 * 109.47144 * 60.00348 * 8 7 6 28 28 H 1.08002 * 119.95252 * 180.25836 * 9 6 5 29 29 H 1.08998 * 109.47436 * 135.54613 * 11 10 9 30 30 H 0.96701 * 114.00099 * 304.71011 * 12 11 10 31 31 H 1.08995 * 109.46786 * 60.00049 * 18 17 2 32 32 H 1.08995 * 109.46727 * 179.97438 * 18 17 2 33 33 H 1.08992 * 109.46928 * 299.99986 * 18 17 2 34 34 H 1.08995 * 109.47074 * 59.99587 * 19 17 2 35 35 H 1.08999 * 109.46966 * 180.02562 * 19 17 2 36 36 H 1.09000 * 109.46444 * 299.99638 * 19 17 2 37 37 H 1.09001 * 109.47131 * 60.00344 * 20 17 2 38 38 H 1.08995 * 109.47579 * 180.02562 * 20 17 2 39 39 H 1.09005 * 109.47426 * 300.00109 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3259 0.0000 0.0000 3 6 2.0647 1.2798 0.0000 4 6 2.8729 1.6210 -1.0854 5 6 3.5603 2.8162 -1.0819 6 6 3.4488 3.6801 -0.0009 7 8 4.1273 4.8572 -0.0014 8 6 4.9355 5.1396 -1.1454 9 6 2.6410 3.3467 1.0786 10 6 1.9548 2.1513 1.0849 11 6 1.0826 1.7882 2.2590 12 8 1.7427 0.8029 3.0561 13 14 0.7631 3.3077 3.2886 14 1 0.0771 4.3316 2.4603 15 1 2.0539 3.8526 3.7806 16 1 -0.0958 2.9497 4.4459 17 14 2.2599 -1.6177 0.0007 18 6 3.3310 -1.7158 1.5219 19 6 1.0492 -3.0338 0.0006 20 6 3.3310 -1.7170 -1.5204 21 1 -0.5401 -0.9319 -0.0793 22 1 -0.5401 0.9320 0.0793 23 1 2.9592 0.9500 -1.9273 24 1 4.1856 3.0811 -1.9217 25 1 5.4211 6.1070 -1.0174 26 1 5.6938 4.3644 -1.2550 27 1 4.3082 5.1628 -2.0366 28 1 2.5535 4.0232 1.9159 29 1 0.1352 1.3883 1.8979 30 1 2.0051 0.0117 2.5659 31 1 2.7043 -1.6577 2.4118 32 1 3.8756 -2.6599 1.5224 33 1 4.0392 -0.8874 1.5215 34 1 0.4229 -2.9762 -0.8896 35 1 1.5943 -3.9777 0.0015 36 1 0.4223 -2.9758 0.8904 37 1 4.0393 -0.8885 -1.5207 38 1 3.8757 -2.6611 -1.5202 39 1 2.7043 -1.6597 -2.4104 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:08:37 Heat of formation + Delta-G solvation = -74.325465 kcal Electronic energy + Delta-G solvation = -18903.081453 eV Core-core repulsion = 16127.724215 eV Total energy + Delta-G solvation = -2775.357238 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.125 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.27332 -39.31269 -37.09046 -34.50111 -32.67597 -30.37267 -29.58455 -28.72675 -28.53134 -27.93625 -26.59106 -23.82692 -22.45375 -20.58373 -19.07478 -18.03713 -17.27544 -17.05561 -16.67199 -16.03930 -15.56709 -15.47211 -14.87227 -14.74978 -14.24864 -14.16794 -14.02545 -13.95960 -13.76928 -13.48031 -13.41393 -13.28411 -13.23570 -13.13693 -12.81591 -12.30615 -12.14779 -12.03944 -11.64532 -11.39336 -11.18908 -11.06583 -10.95498 -10.69968 -10.22888 -9.91072 -8.86409 0.22016 0.33290 0.97570 1.28430 1.59252 1.64632 1.67440 1.80246 2.01101 2.05853 2.30600 2.47968 2.76640 3.64100 3.81030 3.88956 3.93197 4.13665 4.20478 4.22718 4.34297 4.45598 4.55568 4.61574 4.63934 4.64786 4.66922 4.69532 4.71129 4.73436 4.77330 4.95966 5.08937 5.32360 5.39752 5.44683 5.47145 5.50491 5.52187 5.66319 5.80826 6.42350 6.59771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.377 4.377 3 C -0.061 4.061 4 C -0.075 4.075 5 C -0.200 4.200 6 C 0.129 3.871 7 O -0.317 6.317 8 C 0.026 3.974 9 C -0.151 4.151 10 C -0.074 4.074 11 C -0.095 4.095 12 O -0.536 6.536 13 Si 1.008 2.992 14 H -0.248 1.248 15 H -0.249 1.249 16 H -0.255 1.255 17 Si 1.046 2.954 18 C -0.455 4.455 19 C -0.450 4.450 20 C -0.449 4.449 21 H 0.109 0.891 22 H 0.096 0.904 23 H 0.132 0.868 24 H 0.131 0.869 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.133 0.867 29 H 0.080 0.920 30 H 0.364 0.636 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.105 -1.540 -3.117 3.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.418 4.418 3 C -0.061 4.061 4 C -0.093 4.093 5 C -0.219 4.219 6 C 0.084 3.916 7 O -0.230 6.230 8 C -0.069 4.069 9 C -0.169 4.169 10 C -0.074 4.074 11 C -0.203 4.203 12 O -0.344 6.344 13 Si 0.828 3.172 14 H -0.171 1.171 15 H -0.173 1.173 16 H -0.179 1.179 17 Si 1.237 2.763 18 C -0.562 4.562 19 C -0.558 4.558 20 C -0.556 4.556 21 H 0.127 0.873 22 H 0.114 0.886 23 H 0.150 0.850 24 H 0.149 0.851 25 H 0.120 0.880 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.150 0.850 29 H 0.098 0.902 30 H 0.214 0.786 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.170 -0.157 -2.025 2.038 hybrid contribution 0.326 -0.759 -1.204 1.461 sum 0.156 -0.917 -3.229 3.360 Atomic orbital electron populations 1.24384 0.95512 1.02120 0.94286 1.27915 1.00970 1.08025 1.04883 1.18656 0.99114 0.94424 0.93920 1.21056 0.94754 0.95827 0.97615 1.21232 1.05054 0.96420 0.99176 1.18967 0.92715 0.85617 0.94305 1.86077 1.58988 1.35012 1.42945 1.23103 0.93934 1.02429 0.87405 1.20287 0.99944 0.98087 0.98620 1.20083 0.97921 0.93462 0.95976 1.25434 0.96344 1.02426 0.96061 1.86746 1.79500 1.30494 1.37642 0.84532 0.80705 0.73571 0.78396 1.17133 1.17323 1.17921 0.78425 0.66344 0.63387 0.68118 1.26193 1.10099 1.05160 1.14742 1.26154 1.11350 1.13683 1.04651 1.26148 1.09755 1.04697 1.15042 0.87318 0.88613 0.84981 0.85090 0.87989 0.92457 0.92490 0.84970 0.90176 0.78601 0.90899 0.90530 0.90705 0.91026 0.90778 0.90943 0.90980 0.90978 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.17 12.04 28.83 0.35 0.52 16 2 C -0.38 0.34 2.88 -37.59 -0.11 0.23 16 3 C -0.06 -0.07 4.90 -105.00 -0.51 -0.58 16 4 C -0.07 -0.05 9.13 -39.22 -0.36 -0.41 16 5 C -0.20 -0.24 9.02 -39.49 -0.36 -0.59 16 6 C 0.13 0.37 6.69 -39.12 -0.26 0.11 16 7 O -0.32 -0.88 10.49 -19.31 -0.20 -1.08 16 8 C 0.03 -0.03 9.81 101.05 0.99 0.96 16 9 C -0.15 -0.48 8.59 -39.49 -0.34 -0.82 16 10 C -0.07 -0.17 5.24 -104.27 -0.55 -0.72 16 11 C -0.09 -0.16 2.17 36.00 0.08 -0.08 16 12 O -0.54 -1.33 12.68 -35.23 -0.45 -1.78 16 13 Si 1.01 1.84 25.77 -169.99 -4.38 -2.54 16 14 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 15 H -0.25 -0.68 6.71 56.52 0.38 -0.30 16 16 H -0.26 -0.61 7.11 56.52 0.40 -0.21 16 17 Si 1.05 -2.84 11.77 -169.99 -2.00 -4.84 16 18 C -0.45 0.73 7.73 101.05 0.78 1.51 16 19 C -0.45 1.07 7.88 101.05 0.80 1.86 16 20 C -0.45 0.88 8.12 101.05 0.82 1.70 16 21 H 0.11 -0.32 7.07 -52.49 -0.37 -0.69 16 22 H 0.10 -0.10 7.32 -52.48 -0.38 -0.49 16 23 H 0.13 -0.15 6.85 -52.49 -0.36 -0.51 16 24 H 0.13 -0.12 6.28 -52.49 -0.33 -0.45 16 25 H 0.10 -0.26 8.14 -51.93 -0.42 -0.68 16 26 H 0.06 -0.11 7.65 -51.93 -0.40 -0.51 16 27 H 0.06 -0.11 7.65 -51.93 -0.40 -0.51 16 28 H 0.13 0.38 4.89 -52.49 -0.26 0.12 16 29 H 0.08 0.00 5.44 -51.93 -0.28 -0.28 16 30 H 0.36 0.14 4.70 45.56 0.21 0.35 16 31 H 0.07 -0.13 6.42 -51.93 -0.33 -0.47 16 32 H 0.08 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 34 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 35 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 36 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 37 H 0.07 -0.12 7.09 -51.93 -0.37 -0.49 16 38 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 39 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 LS Contribution 311.05 15.07 4.69 4.69 Total: 0.00 -4.47 311.05 -6.41 -10.88 By element: Atomic # 1 Polarization: -3.62 SS G_CDS: -5.40 Total: -9.02 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 1.33 Total: 3.70 kcal Atomic # 8 Polarization: -2.21 SS G_CDS: -0.65 Total: -2.86 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: -6.38 Total: -7.39 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -4.47 -6.41 -10.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.447 kcal (2) G-P(sol) polarization free energy of solvation -4.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds