Wall clock time and date at job start Mon Mar 8 2021 10:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32590 * 1 3 3 C 1.47774 * 119.99761 * 2 1 4 4 C 1.39559 * 120.08362 * 244.00067 * 3 2 1 5 5 C 1.37881 * 119.91380 * 179.97438 * 4 3 2 6 6 C 1.38831 * 120.08602 * 359.97438 * 5 4 3 7 7 O 1.35862 * 119.91490 * 180.02562 * 6 5 4 8 8 C 1.42894 * 116.99948 * 359.97438 * 7 6 5 9 9 C 1.38893 * 120.17015 * 359.74869 * 6 5 4 10 10 C 1.37829 * 120.08490 * 0.50625 * 9 6 5 11 11 C 1.50695 * 120.04192 * 179.77052 * 10 9 6 12 12 O 1.42899 * 109.47460 * 255.54733 * 11 10 9 13 13 Si 1.86306 * 109.47201 * 15.54618 * 11 10 9 14 14 H 1.48497 * 109.46866 * 60.00137 * 13 11 10 15 15 H 1.48494 * 109.46863 * 300.00170 * 13 11 10 16 16 H 1.48496 * 109.47042 * 180.02562 * 13 11 10 17 17 Si 1.86797 * 120.00124 * 179.97438 * 2 1 3 18 18 C 1.86299 * 109.47454 * 240.00168 * 17 2 1 19 19 C 1.86308 * 109.46980 * 0.02562 * 17 2 1 20 20 C 1.86298 * 109.47059 * 119.99987 * 17 2 1 21 21 H 1.08001 * 120.00516 * 175.13866 * 1 2 3 22 22 H 1.08006 * 120.00423 * 355.13936 * 1 2 3 23 23 H 1.08000 * 120.04222 * 0.02562 * 4 3 2 24 24 H 1.08000 * 119.95261 * 180.02562 * 5 4 3 25 25 H 1.09000 * 109.47443 * 180.02562 * 8 7 6 26 26 H 1.09001 * 109.47450 * 300.00683 * 8 7 6 27 27 H 1.09000 * 109.47144 * 60.00348 * 8 7 6 28 28 H 1.08002 * 119.95252 * 180.25836 * 9 6 5 29 29 H 1.08998 * 109.47436 * 135.54613 * 11 10 9 30 30 H 0.96701 * 114.00099 * 304.71011 * 12 11 10 31 31 H 1.08995 * 109.46786 * 60.00049 * 18 17 2 32 32 H 1.08995 * 109.46727 * 179.97438 * 18 17 2 33 33 H 1.08992 * 109.46928 * 299.99986 * 18 17 2 34 34 H 1.08995 * 109.47074 * 59.99587 * 19 17 2 35 35 H 1.08999 * 109.46966 * 180.02562 * 19 17 2 36 36 H 1.09000 * 109.46444 * 299.99638 * 19 17 2 37 37 H 1.09001 * 109.47131 * 60.00344 * 20 17 2 38 38 H 1.08995 * 109.47579 * 180.02562 * 20 17 2 39 39 H 1.09005 * 109.47426 * 300.00109 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3259 0.0000 0.0000 3 6 2.0647 1.2798 0.0000 4 6 2.8729 1.6210 -1.0854 5 6 3.5603 2.8162 -1.0819 6 6 3.4488 3.6801 -0.0009 7 8 4.1273 4.8572 -0.0014 8 6 4.9355 5.1396 -1.1454 9 6 2.6410 3.3467 1.0786 10 6 1.9548 2.1513 1.0849 11 6 1.0826 1.7882 2.2590 12 8 1.7427 0.8029 3.0561 13 14 0.7631 3.3077 3.2886 14 1 0.0771 4.3316 2.4603 15 1 2.0539 3.8526 3.7806 16 1 -0.0958 2.9497 4.4459 17 14 2.2599 -1.6177 0.0007 18 6 3.3310 -1.7158 1.5219 19 6 1.0492 -3.0338 0.0006 20 6 3.3310 -1.7170 -1.5204 21 1 -0.5401 -0.9319 -0.0793 22 1 -0.5401 0.9320 0.0793 23 1 2.9592 0.9500 -1.9273 24 1 4.1856 3.0811 -1.9217 25 1 5.4211 6.1070 -1.0174 26 1 5.6938 4.3644 -1.2550 27 1 4.3082 5.1628 -2.0366 28 1 2.5535 4.0232 1.9159 29 1 0.1352 1.3883 1.8979 30 1 2.0051 0.0117 2.5659 31 1 2.7043 -1.6577 2.4118 32 1 3.8756 -2.6599 1.5224 33 1 4.0392 -0.8874 1.5215 34 1 0.4229 -2.9762 -0.8896 35 1 1.5943 -3.9777 0.0015 36 1 0.4223 -2.9758 0.8904 37 1 4.0393 -0.8885 -1.5207 38 1 3.8757 -2.6611 -1.5202 39 1 2.7043 -1.6597 -2.4104 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419808.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:08:36 Heat of formation + Delta-G solvation = -66.048560 kcal Electronic energy + Delta-G solvation = -18902.722540 eV Core-core repulsion = 16127.724215 eV Total energy + Delta-G solvation = -2774.998325 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.125 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.34351 -39.38736 -37.21500 -34.45609 -32.76105 -30.35856 -29.40284 -28.59812 -28.35924 -27.82357 -26.67056 -23.87861 -22.51277 -20.55163 -19.15982 -18.14241 -17.35967 -17.05073 -16.70173 -16.14958 -15.64569 -15.45124 -14.87405 -14.81146 -14.26105 -14.04933 -13.87657 -13.82238 -13.65713 -13.44576 -13.38786 -13.10617 -13.08971 -12.95372 -12.71383 -12.35185 -12.31337 -12.03439 -11.83209 -11.40622 -11.22127 -11.00377 -10.75474 -10.69603 -10.12434 -10.01286 -8.92437 0.14455 0.25038 1.05434 1.16072 1.41539 1.46109 1.84295 1.87934 2.03705 2.19602 2.29801 2.59880 2.74865 3.56376 3.75283 3.85281 3.91606 4.18575 4.20317 4.28327 4.34587 4.43008 4.59668 4.69283 4.81414 4.82833 4.83629 4.88689 4.89960 4.91154 4.91519 4.94781 5.07937 5.26503 5.44092 5.47985 5.58745 5.64525 5.67771 5.72304 5.87060 6.37175 6.55067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.392 4.392 3 C -0.061 4.061 4 C -0.079 4.079 5 C -0.200 4.200 6 C 0.111 3.889 7 O -0.340 6.340 8 C 0.018 3.982 9 C -0.174 4.174 10 C -0.086 4.086 11 C -0.094 4.094 12 O -0.549 6.549 13 Si 1.022 2.978 14 H -0.246 1.246 15 H -0.270 1.270 16 H -0.262 1.262 17 Si 1.104 2.896 18 C -0.472 4.472 19 C -0.459 4.459 20 C -0.462 4.462 21 H 0.128 0.872 22 H 0.090 0.910 23 H 0.153 0.847 24 H 0.151 0.849 25 H 0.115 0.885 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.372 0.628 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.215 -2.621 -4.251 4.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.431 4.431 3 C -0.061 4.061 4 C -0.097 4.097 5 C -0.219 4.219 6 C 0.066 3.934 7 O -0.255 6.255 8 C -0.076 4.076 9 C -0.193 4.193 10 C -0.086 4.086 11 C -0.203 4.203 12 O -0.358 6.358 13 Si 0.844 3.156 14 H -0.169 1.169 15 H -0.195 1.195 16 H -0.187 1.187 17 Si 1.292 2.708 18 C -0.577 4.577 19 C -0.566 4.566 20 C -0.569 4.569 21 H 0.146 0.854 22 H 0.109 0.891 23 H 0.170 0.830 24 H 0.169 0.831 25 H 0.133 0.867 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.142 0.858 29 H 0.116 0.884 30 H 0.224 0.776 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.490 -1.224 -3.160 3.424 hybrid contribution 0.454 -0.398 -0.853 1.045 sum -0.036 -1.623 -4.012 4.328 Atomic orbital electron populations 1.24581 0.95423 1.02861 0.93349 1.28255 1.01370 1.07892 1.05629 1.18919 0.98919 0.94845 0.93433 1.21366 0.94276 0.95929 0.98085 1.21490 1.05027 0.96206 0.99165 1.19150 0.93209 0.86188 0.94883 1.86040 1.59546 1.35174 1.44695 1.23344 0.94014 1.03440 0.86794 1.20430 1.01106 0.98769 0.98983 1.20182 0.98239 0.93554 0.96671 1.25411 0.96999 1.02111 0.95769 1.86717 1.79729 1.31065 1.38331 0.84345 0.79368 0.73893 0.78020 1.16902 1.19509 1.18692 0.77534 0.64965 0.61860 0.66447 1.26405 1.10435 1.04877 1.16025 1.26232 1.11608 1.13758 1.05043 1.26288 1.10071 1.04685 1.15808 0.85400 0.89127 0.82967 0.83135 0.86723 0.91505 0.91475 0.85791 0.88431 0.77646 0.90810 0.90221 0.91777 0.90557 0.90694 0.90655 0.91251 0.90847 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.48 12.04 66.66 0.80 1.28 16 2 C -0.39 1.01 2.88 23.64 0.07 1.08 16 3 C -0.06 -0.13 4.90 -20.11 -0.10 -0.23 16 4 C -0.08 -0.08 9.13 22.50 0.21 0.13 16 5 C -0.20 -0.48 9.02 22.33 0.20 -0.28 16 6 C 0.11 0.77 6.69 22.57 0.15 0.92 16 7 O -0.34 -2.32 10.49 -92.00 -0.97 -3.28 16 8 C 0.02 -0.03 9.81 113.37 1.11 1.08 16 9 C -0.17 -1.43 8.59 22.33 0.19 -1.24 16 10 C -0.09 -0.47 5.24 -19.63 -0.10 -0.58 16 11 C -0.09 -0.39 2.17 71.23 0.15 -0.23 16 12 O -0.55 -3.11 12.68 -148.98 -1.89 -5.00 16 13 Si 1.02 5.30 25.77 68.60 1.77 7.07 16 14 H -0.25 -1.09 7.11 99.48 0.71 -0.38 16 15 H -0.27 -2.22 6.71 99.48 0.67 -1.56 16 16 H -0.26 -1.58 7.11 99.48 0.71 -0.87 16 17 Si 1.10 -7.02 11.77 68.60 0.81 -6.22 16 18 C -0.47 1.53 7.73 113.37 0.88 2.41 16 19 C -0.46 2.85 7.88 113.37 0.89 3.74 16 20 C -0.46 2.28 8.12 113.37 0.92 3.20 16 21 H 0.13 -1.00 7.07 -2.91 -0.02 -1.02 16 22 H 0.09 -0.26 7.32 -2.91 -0.02 -0.28 16 23 H 0.15 -0.55 6.85 -2.91 -0.02 -0.57 16 24 H 0.15 -0.38 6.28 -2.91 -0.02 -0.40 16 25 H 0.11 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H 0.07 -0.27 7.65 -2.39 -0.02 -0.29 16 27 H 0.07 -0.28 7.65 -2.39 -0.02 -0.30 16 28 H 0.12 1.06 4.89 -2.91 -0.01 1.04 16 29 H 0.10 0.01 5.44 -2.39 -0.01 -0.01 16 30 H 0.37 0.42 4.70 -74.06 -0.35 0.07 16 31 H 0.07 -0.26 6.42 -2.39 -0.02 -0.28 16 32 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 33 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 34 H 0.08 -0.52 7.96 -2.39 -0.02 -0.54 16 35 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 36 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 37 H 0.07 -0.29 7.09 -2.39 -0.02 -0.31 16 38 H 0.07 -0.37 7.96 -2.39 -0.02 -0.38 16 39 H 0.07 -0.42 7.96 -2.38 -0.02 -0.44 16 Total: 0.00 -11.14 311.05 6.50 -4.64 By element: Atomic # 1 Polarization: -9.90 SS G_CDS: 1.41 Total: -8.49 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 5.37 Total: 11.28 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -2.85 Total: -8.28 kcal Atomic # 14 Polarization: -1.72 SS G_CDS: 2.58 Total: 0.85 kcal Total: -11.14 6.50 -4.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419808.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.408 kcal (2) G-P(sol) polarization free energy of solvation -11.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds