Wall clock time and date at job start Mon Mar 8 2021 10:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32604 * 1 3 3 C 1.47743 * 119.99576 * 2 1 4 4 C 1.39541 * 120.11889 * 114.50628 * 3 2 1 5 5 C 1.37948 * 119.95584 * 179.72319 * 4 3 2 6 6 C 1.50695 * 119.86214 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.47529 * 64.99733 * 6 5 4 8 8 Si 1.86306 * 109.47419 * 184.99925 * 6 5 4 9 9 H 1.48498 * 109.46904 * 59.99261 * 8 6 5 10 10 H 1.48497 * 109.47258 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46810 * 299.99865 * 8 6 5 12 12 C 1.38323 * 120.27942 * 0.04085 * 5 4 3 13 13 C 1.38790 * 120.37499 * 359.97438 * 12 5 4 14 14 C 1.38783 * 119.90266 * 359.91363 * 13 12 5 15 15 O 1.36007 * 120.86132 * 180.34619 * 14 13 12 16 16 C 1.43178 * 116.71011 * 342.63693 * 15 14 13 17 17 C 1.53473 * 108.21645 * 46.22546 * 16 15 14 18 18 O 1.36132 * 119.34634 * 179.77464 * 13 12 5 19 19 Si 1.86798 * 120.00235 * 179.97438 * 2 1 3 20 20 C 1.86296 * 109.47029 * 240.00404 * 19 2 1 21 21 C 1.86301 * 109.47024 * 0.02562 * 19 2 1 22 22 C 1.86293 * 109.47096 * 120.00498 * 19 2 1 23 23 H 1.08001 * 119.99804 * 174.82886 * 1 2 3 24 24 H 1.07995 * 120.00454 * 354.83349 * 1 2 3 25 25 H 1.08005 * 120.01806 * 359.74203 * 4 3 2 26 26 H 1.09002 * 109.46856 * 304.99360 * 6 5 4 27 27 H 0.96699 * 114.00022 * 59.99418 * 7 6 5 28 28 H 1.07997 * 119.80910 * 179.97438 * 12 5 4 29 29 H 1.09005 * 109.72016 * 286.54357 * 16 15 14 30 30 H 1.09006 * 109.71592 * 165.90182 * 16 15 14 31 31 H 1.08997 * 109.71367 * 180.66057 * 17 16 15 32 32 H 1.09000 * 109.70734 * 60.03533 * 17 16 15 33 33 H 1.09005 * 109.47429 * 60.00051 * 20 19 2 34 34 H 1.09011 * 109.47139 * 179.97438 * 20 19 2 35 35 H 1.09002 * 109.47611 * 299.99885 * 20 19 2 36 36 H 1.09008 * 109.46744 * 60.00404 * 21 19 2 37 37 H 1.09003 * 109.47019 * 179.97438 * 21 19 2 38 38 H 1.09001 * 109.47622 * 300.00255 * 21 19 2 39 39 H 1.08998 * 109.47374 * 60.00029 * 22 19 2 40 40 H 1.09003 * 109.47465 * 180.02562 * 22 19 2 41 41 H 1.09007 * 109.47149 * 299.99478 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0647 1.2795 0.0000 4 6 2.8483 1.6357 1.0983 5 6 3.5411 2.8286 1.0923 6 6 4.3872 3.2108 2.2793 7 8 5.4691 2.2864 2.4106 8 14 5.0648 4.9285 2.0317 9 1 3.9406 5.8891 1.8951 10 1 5.8981 5.3054 3.2016 11 1 5.8952 4.9604 0.8010 12 6 3.4622 3.6755 0.0015 13 6 2.6863 3.3340 -1.0974 14 6 1.9863 2.1357 -1.1047 15 8 1.2258 1.7784 -2.1741 16 6 0.8739 2.8207 -3.0905 17 6 2.1352 3.6420 -3.3904 18 8 2.6199 4.1853 -2.1577 19 14 2.2601 -1.6177 0.0007 20 6 3.3310 -1.7157 1.5219 21 6 1.0495 -3.0337 0.0006 22 6 3.3312 -1.7169 -1.5202 23 1 -0.5400 -0.9315 -0.0843 24 1 -0.5400 0.9314 0.0842 25 1 2.9126 0.9776 1.9523 26 1 3.7776 3.1875 3.1826 27 1 6.0543 2.2541 1.6415 28 1 4.0074 4.6077 0.0051 29 1 0.1148 3.4628 -2.6434 30 1 0.4907 2.3852 -4.0134 31 1 1.8919 4.4515 -4.0785 32 1 2.8960 2.9989 -3.8328 33 1 2.7043 -1.6576 2.4119 34 1 3.8758 -2.6599 1.5226 35 1 4.0394 -0.8872 1.5217 36 1 0.4232 -2.9762 -0.8898 37 1 1.5945 -3.9777 0.0005 38 1 0.4224 -2.9759 0.8903 39 1 4.0395 -0.8884 -1.5206 40 1 3.8760 -2.6611 -1.5201 41 1 2.7046 -1.6597 -2.4103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:09:34 Heat of formation + Delta-G solvation = -104.218722 kcal Electronic energy + Delta-G solvation = -22508.197247 eV Core-core repulsion = 19284.635407 eV Total energy + Delta-G solvation = -3223.561840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.125 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.25508 -39.53409 -38.30749 -37.31106 -34.64971 -32.38761 -30.77946 -29.82971 -29.46652 -28.34655 -28.28154 -26.77717 -25.13352 -24.11914 -21.67414 -20.47243 -19.39756 -18.48802 -18.37436 -17.27888 -16.72974 -16.34268 -16.03804 -15.80376 -15.57846 -15.39619 -15.24500 -15.00828 -14.59801 -14.22248 -13.99702 -13.92495 -13.76817 -13.53399 -13.32272 -13.25979 -13.10933 -13.01412 -12.81039 -12.35550 -12.17256 -12.13321 -11.99392 -11.72310 -11.51958 -11.14861 -10.88725 -10.83446 -10.38057 -10.16741 -9.20598 -8.98391 0.12318 0.32035 1.13056 1.19463 1.46895 1.55921 1.78395 1.92418 1.94754 2.02406 2.16357 2.25536 2.58289 2.76772 3.20209 3.49343 3.61034 3.75689 3.82213 3.89587 4.12425 4.22689 4.25954 4.42633 4.44709 4.55970 4.71346 4.73827 4.78480 4.82025 4.82382 4.84771 4.86296 4.92848 5.01174 5.16595 5.34645 5.48553 5.52322 5.59010 5.64345 5.67672 5.85034 5.93977 6.44432 6.57692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.365 4.365 3 C -0.026 4.026 4 C -0.088 4.088 5 C -0.114 4.114 6 C -0.074 4.074 7 O -0.536 6.536 8 Si 0.944 3.056 9 H -0.250 1.250 10 H -0.253 1.253 11 H -0.251 1.251 12 C -0.128 4.128 13 C 0.058 3.942 14 C 0.059 3.941 15 O -0.295 6.295 16 C 0.018 3.982 17 C 0.020 3.980 18 O -0.308 6.308 19 Si 1.051 2.949 20 C -0.448 4.448 21 C -0.449 4.449 22 C -0.445 4.445 23 H 0.106 0.894 24 H 0.089 0.911 25 H 0.141 0.859 26 H 0.120 0.880 27 H 0.377 0.623 28 H 0.131 0.869 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 -0.643 -1.943 2.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.406 4.406 3 C -0.027 4.027 4 C -0.106 4.106 5 C -0.114 4.114 6 C -0.185 4.185 7 O -0.341 6.341 8 Si 0.767 3.233 9 H -0.173 1.173 10 H -0.177 1.177 11 H -0.175 1.175 12 C -0.147 4.147 13 C 0.013 3.987 14 C 0.014 3.986 15 O -0.209 6.209 16 C -0.058 4.058 17 C -0.056 4.056 18 O -0.222 6.222 19 Si 1.242 2.758 20 C -0.556 4.556 21 C -0.557 4.557 22 C -0.553 4.553 23 H 0.124 0.876 24 H 0.108 0.892 25 H 0.159 0.841 26 H 0.138 0.862 27 H 0.224 0.776 28 H 0.148 0.852 29 H 0.095 0.905 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.078 0.179 -1.553 1.899 hybrid contribution -0.230 0.032 -0.905 0.934 sum -1.308 0.210 -2.458 2.792 Atomic orbital electron populations 1.24199 0.95400 1.01645 0.94046 1.27728 1.00835 1.07182 1.04850 1.18295 0.99135 0.94420 0.90817 1.20955 0.95660 0.96297 0.97712 1.19907 1.00408 0.95466 0.95660 1.24884 0.90415 1.04260 0.98906 1.86521 1.39784 1.63286 1.44530 0.85756 0.81086 0.75517 0.80899 1.17342 1.17702 1.17464 1.20286 1.00546 1.01104 0.92723 1.18646 0.98941 0.91214 0.89931 1.18927 0.95498 0.94549 0.89669 1.86346 1.66614 1.34726 1.33262 1.23671 0.96761 0.90751 0.94573 1.23668 0.96337 1.00374 0.85190 1.86328 1.82158 1.35929 1.17805 0.78349 0.66279 0.63272 0.67887 1.26143 1.09812 1.04806 1.14820 1.26149 1.11359 1.13699 1.04513 1.26066 1.09706 1.04209 1.15305 0.87598 0.89220 0.84082 0.86180 0.77627 0.85192 0.90454 0.85884 0.85904 0.90276 0.91108 0.91070 0.90605 0.91135 0.90870 0.91046 0.91360 0.91250 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.05 13.26 28.83 0.38 0.33 16 2 C -0.37 -0.26 3.80 -37.60 -0.14 -0.40 16 3 C -0.03 -0.06 4.91 -104.88 -0.52 -0.57 16 4 C -0.09 -0.13 8.82 -39.20 -0.35 -0.48 16 5 C -0.11 -0.15 5.34 -104.70 -0.56 -0.71 16 6 C -0.07 0.00 2.80 36.00 0.10 0.10 16 7 O -0.54 -0.16 12.83 -35.23 -0.45 -0.61 16 8 Si 0.94 0.19 25.13 -169.99 -4.27 -4.08 16 9 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 10 H -0.25 -0.34 7.11 56.52 0.40 0.07 16 11 H -0.25 -0.13 7.04 56.52 0.40 0.27 16 12 C -0.13 -0.31 8.58 -39.35 -0.34 -0.64 16 13 C 0.06 0.19 6.49 -39.18 -0.25 -0.07 16 14 C 0.06 0.18 6.46 -38.73 -0.25 -0.07 16 15 O -0.30 -0.68 9.54 -32.64 -0.31 -0.99 16 16 C 0.02 -0.01 7.26 37.40 0.27 0.26 16 17 C 0.02 -0.01 7.26 37.40 0.27 0.26 16 18 O -0.31 -0.86 10.42 -33.04 -0.34 -1.21 16 19 Si 1.05 -1.32 12.33 -169.99 -2.10 -3.41 16 20 C -0.45 0.34 8.19 101.05 0.83 1.17 16 21 C -0.45 0.53 7.88 101.05 0.80 1.33 16 22 C -0.45 -0.01 8.65 101.05 0.87 0.86 16 23 H 0.11 -0.14 7.07 -52.49 -0.37 -0.51 16 24 H 0.09 0.10 8.05 -52.49 -0.42 -0.33 16 25 H 0.14 0.04 7.06 -52.48 -0.37 -0.33 16 26 H 0.12 -0.12 7.96 -51.93 -0.41 -0.54 16 27 H 0.38 -1.03 8.70 45.56 0.40 -0.63 16 28 H 0.13 0.20 4.83 -52.49 -0.25 -0.05 16 29 H 0.08 -0.07 8.14 -51.93 -0.42 -0.50 16 30 H 0.12 -0.42 8.14 -51.93 -0.42 -0.84 16 31 H 0.12 -0.41 8.14 -51.93 -0.42 -0.83 16 32 H 0.08 -0.08 8.14 -51.93 -0.42 -0.51 16 33 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 34 H 0.07 -0.07 7.96 -51.92 -0.41 -0.48 16 35 H 0.07 -0.03 7.23 -51.93 -0.38 -0.40 16 36 H 0.07 -0.08 7.96 -51.92 -0.41 -0.50 16 37 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 38 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 39 H 0.07 0.05 7.96 -51.93 -0.41 -0.36 16 40 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 41 H 0.07 0.03 7.96 -51.93 -0.41 -0.39 16 LS Contribution 338.38 15.07 5.10 5.10 Total: 0.00 -5.65 338.38 -6.87 -12.52 By element: Atomic # 1 Polarization: -3.07 SS G_CDS: -5.61 Total: -8.68 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 1.12 Total: 1.37 kcal Atomic # 8 Polarization: -1.70 SS G_CDS: -1.11 Total: -2.81 kcal Atomic # 14 Polarization: -1.13 SS G_CDS: -6.37 Total: -7.50 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -5.65 -6.87 -12.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.700 kcal (2) G-P(sol) polarization free energy of solvation -5.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds