Wall clock time and date at job start Mon Mar 8 2021 10:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32604 * 1 3 3 C 1.47743 * 119.99576 * 2 1 4 4 C 1.39541 * 120.11889 * 114.50628 * 3 2 1 5 5 C 1.37948 * 119.95584 * 179.72319 * 4 3 2 6 6 C 1.50695 * 119.86214 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.47529 * 64.99733 * 6 5 4 8 8 Si 1.86306 * 109.47419 * 184.99925 * 6 5 4 9 9 H 1.48498 * 109.46904 * 59.99261 * 8 6 5 10 10 H 1.48497 * 109.47258 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46810 * 299.99865 * 8 6 5 12 12 C 1.38323 * 120.27942 * 0.04085 * 5 4 3 13 13 C 1.38790 * 120.37499 * 359.97438 * 12 5 4 14 14 C 1.38783 * 119.90266 * 359.91363 * 13 12 5 15 15 O 1.36007 * 120.86132 * 180.34619 * 14 13 12 16 16 C 1.43178 * 116.71011 * 342.63693 * 15 14 13 17 17 C 1.53473 * 108.21645 * 46.22546 * 16 15 14 18 18 O 1.36132 * 119.34634 * 179.77464 * 13 12 5 19 19 Si 1.86798 * 120.00235 * 179.97438 * 2 1 3 20 20 C 1.86296 * 109.47029 * 240.00404 * 19 2 1 21 21 C 1.86301 * 109.47024 * 0.02562 * 19 2 1 22 22 C 1.86293 * 109.47096 * 120.00498 * 19 2 1 23 23 H 1.08001 * 119.99804 * 174.82886 * 1 2 3 24 24 H 1.07995 * 120.00454 * 354.83349 * 1 2 3 25 25 H 1.08005 * 120.01806 * 359.74203 * 4 3 2 26 26 H 1.09002 * 109.46856 * 304.99360 * 6 5 4 27 27 H 0.96699 * 114.00022 * 59.99418 * 7 6 5 28 28 H 1.07997 * 119.80910 * 179.97438 * 12 5 4 29 29 H 1.09005 * 109.72016 * 286.54357 * 16 15 14 30 30 H 1.09006 * 109.71592 * 165.90182 * 16 15 14 31 31 H 1.08997 * 109.71367 * 180.66057 * 17 16 15 32 32 H 1.09000 * 109.70734 * 60.03533 * 17 16 15 33 33 H 1.09005 * 109.47429 * 60.00051 * 20 19 2 34 34 H 1.09011 * 109.47139 * 179.97438 * 20 19 2 35 35 H 1.09002 * 109.47611 * 299.99885 * 20 19 2 36 36 H 1.09008 * 109.46744 * 60.00404 * 21 19 2 37 37 H 1.09003 * 109.47019 * 179.97438 * 21 19 2 38 38 H 1.09001 * 109.47622 * 300.00255 * 21 19 2 39 39 H 1.08998 * 109.47374 * 60.00029 * 22 19 2 40 40 H 1.09003 * 109.47465 * 180.02562 * 22 19 2 41 41 H 1.09007 * 109.47149 * 299.99478 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0647 1.2795 0.0000 4 6 2.8483 1.6357 1.0983 5 6 3.5411 2.8286 1.0923 6 6 4.3872 3.2108 2.2793 7 8 5.4691 2.2864 2.4106 8 14 5.0648 4.9285 2.0317 9 1 3.9406 5.8891 1.8951 10 1 5.8981 5.3054 3.2016 11 1 5.8952 4.9604 0.8010 12 6 3.4622 3.6755 0.0015 13 6 2.6863 3.3340 -1.0974 14 6 1.9863 2.1357 -1.1047 15 8 1.2258 1.7784 -2.1741 16 6 0.8739 2.8207 -3.0905 17 6 2.1352 3.6420 -3.3904 18 8 2.6199 4.1853 -2.1577 19 14 2.2601 -1.6177 0.0007 20 6 3.3310 -1.7157 1.5219 21 6 1.0495 -3.0337 0.0006 22 6 3.3312 -1.7169 -1.5202 23 1 -0.5400 -0.9315 -0.0843 24 1 -0.5400 0.9314 0.0842 25 1 2.9126 0.9776 1.9523 26 1 3.7776 3.1875 3.1826 27 1 6.0543 2.2541 1.6415 28 1 4.0074 4.6077 0.0051 29 1 0.1148 3.4628 -2.6434 30 1 0.4907 2.3852 -4.0134 31 1 1.8919 4.4515 -4.0785 32 1 2.8960 2.9989 -3.8328 33 1 2.7043 -1.6576 2.4119 34 1 3.8758 -2.6599 1.5226 35 1 4.0394 -0.8872 1.5217 36 1 0.4232 -2.9762 -0.8898 37 1 1.5945 -3.9777 0.0005 38 1 0.4224 -2.9759 0.8903 39 1 4.0395 -0.8884 -1.5206 40 1 3.8760 -2.6611 -1.5201 41 1 2.7046 -1.6597 -2.4103 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419810.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:09:33 Heat of formation + Delta-G solvation = -97.469667 kcal Electronic energy + Delta-G solvation = -22507.904586 eV Core-core repulsion = 19284.635407 eV Total energy + Delta-G solvation = -3223.269179 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.32866 -39.59402 -38.39662 -37.33500 -34.69128 -32.40468 -30.83009 -29.87347 -29.39723 -28.30411 -28.18387 -26.82462 -25.16629 -24.18223 -21.70691 -20.52071 -19.47291 -18.52489 -18.43633 -17.30975 -16.76998 -16.40591 -16.04269 -15.85896 -15.62277 -15.43918 -15.33461 -15.01385 -14.62621 -14.19073 -13.94833 -13.85277 -13.73919 -13.53975 -13.32686 -13.17571 -13.05755 -12.94890 -12.78721 -12.40838 -12.22543 -12.15140 -12.02855 -11.77245 -11.56211 -11.11547 -10.90178 -10.75205 -10.40341 -10.17679 -9.30586 -9.09835 0.00991 0.19667 1.11875 1.17529 1.42081 1.50621 1.82898 1.88461 1.99279 2.04644 2.20137 2.27670 2.55335 2.75044 3.21797 3.52075 3.58923 3.74948 3.87951 3.97562 4.09664 4.17662 4.24119 4.48453 4.51013 4.56877 4.75164 4.80141 4.82747 4.82900 4.88617 4.91034 4.91345 4.94417 4.96893 5.07197 5.27427 5.45794 5.55973 5.59146 5.67437 5.72378 5.82584 5.89046 6.35385 6.71032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.380 4.380 3 C -0.034 4.034 4 C -0.093 4.093 5 C -0.111 4.111 6 C -0.067 4.067 7 O -0.545 6.545 8 Si 0.972 3.028 9 H -0.264 1.264 10 H -0.267 1.267 11 H -0.257 1.257 12 C -0.143 4.143 13 C 0.042 3.958 14 C 0.044 3.956 15 O -0.309 6.309 16 C 0.013 3.987 17 C 0.015 3.985 18 O -0.327 6.327 19 Si 1.103 2.897 20 C -0.457 4.457 21 C -0.455 4.455 22 C -0.460 4.460 23 H 0.124 0.876 24 H 0.078 0.922 25 H 0.153 0.847 26 H 0.133 0.867 27 H 0.389 0.611 28 H 0.133 0.867 29 H 0.076 0.924 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.360 -1.480 -1.896 2.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.419 4.419 3 C -0.035 4.035 4 C -0.111 4.111 5 C -0.112 4.112 6 C -0.178 4.178 7 O -0.352 6.352 8 Si 0.797 3.203 9 H -0.189 1.189 10 H -0.192 1.192 11 H -0.181 1.181 12 C -0.161 4.161 13 C -0.003 4.003 14 C -0.002 4.002 15 O -0.224 6.224 16 C -0.062 4.062 17 C -0.060 4.060 18 O -0.242 6.242 19 Si 1.291 2.709 20 C -0.564 4.564 21 C -0.563 4.563 22 C -0.566 4.566 23 H 0.142 0.858 24 H 0.096 0.904 25 H 0.171 0.829 26 H 0.150 0.850 27 H 0.238 0.762 28 H 0.150 0.850 29 H 0.095 0.905 30 H 0.168 0.832 31 H 0.167 0.833 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.364 -0.643 -1.530 2.148 hybrid contribution -0.139 0.329 -0.980 1.043 sum -1.502 -0.314 -2.510 2.942 Atomic orbital electron populations 1.24320 0.95401 1.01985 0.93873 1.28163 1.01192 1.07548 1.04960 1.18583 0.99205 0.94894 0.90772 1.21140 0.95518 0.96504 0.97940 1.20054 1.00207 0.95221 0.95696 1.24859 0.90340 1.03792 0.98856 1.86492 1.39992 1.63234 1.45514 0.85367 0.79924 0.75217 0.79746 1.18889 1.19180 1.18105 1.20456 1.00988 1.01566 0.93097 1.18870 0.99445 0.91577 0.90429 1.19114 0.95982 0.94750 0.90306 1.86307 1.66560 1.36011 1.33494 1.23920 0.96689 0.90527 0.95025 1.23936 0.96307 1.01433 0.84339 1.86286 1.82535 1.36653 1.18703 0.77575 0.65104 0.61844 0.66388 1.26234 1.09992 1.04843 1.15333 1.26192 1.11501 1.13732 1.04879 1.26264 1.09972 1.04064 1.16272 0.85776 0.90407 0.82932 0.84975 0.76221 0.84980 0.90543 0.83202 0.83298 0.90183 0.90716 0.90658 0.91079 0.90995 0.90475 0.90486 0.92388 0.90706 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.11 13.26 66.66 0.88 0.77 16 2 C -0.38 -0.63 3.80 23.63 0.09 -0.54 16 3 C -0.03 -0.17 4.91 -20.03 -0.10 -0.27 16 4 C -0.09 -0.32 8.82 22.52 0.20 -0.12 16 5 C -0.11 -0.38 5.34 -19.91 -0.11 -0.48 16 6 C -0.07 -0.01 2.80 71.23 0.20 0.19 16 7 O -0.55 -0.20 12.83 -148.98 -1.91 -2.11 16 8 Si 0.97 1.03 25.13 68.60 1.72 2.76 16 9 H -0.26 -0.88 7.11 99.48 0.71 -0.17 16 10 H -0.27 -0.87 7.11 99.48 0.71 -0.17 16 11 H -0.26 -0.47 7.04 99.48 0.70 0.23 16 12 C -0.14 -0.87 8.58 22.42 0.19 -0.68 16 13 C 0.04 0.33 6.49 22.53 0.15 0.48 16 14 C 0.04 0.32 6.46 22.82 0.15 0.47 16 15 O -0.31 -1.70 9.54 -81.32 -0.78 -2.48 16 16 C 0.01 -0.02 7.26 72.14 0.52 0.51 16 17 C 0.01 -0.01 7.26 72.14 0.52 0.51 16 18 O -0.33 -2.23 10.42 -82.75 -0.86 -3.10 16 19 Si 1.10 -3.15 12.33 68.60 0.85 -2.30 16 20 C -0.46 0.96 8.19 113.37 0.93 1.89 16 21 C -0.45 1.58 7.88 113.37 0.89 2.47 16 22 C -0.46 -0.18 8.65 113.37 0.98 0.80 16 23 H 0.12 -0.40 7.07 -2.91 -0.02 -0.42 16 24 H 0.08 0.23 8.05 -2.91 -0.02 0.21 16 25 H 0.15 0.07 7.06 -2.91 -0.02 0.05 16 26 H 0.13 -0.32 7.96 -2.39 -0.02 -0.34 16 27 H 0.39 -2.13 8.70 -74.06 -0.64 -2.78 16 28 H 0.13 0.61 4.83 -2.91 -0.01 0.59 16 29 H 0.08 -0.10 8.14 -2.38 -0.02 -0.12 16 30 H 0.15 -1.12 8.14 -2.38 -0.02 -1.14 16 31 H 0.15 -1.06 8.14 -2.39 -0.02 -1.08 16 32 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.07 -0.20 7.96 -2.38 -0.02 -0.22 16 34 H 0.07 -0.21 7.96 -2.38 -0.02 -0.23 16 35 H 0.07 -0.07 7.23 -2.39 -0.02 -0.08 16 36 H 0.07 -0.25 7.96 -2.38 -0.02 -0.26 16 37 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 38 H 0.08 -0.33 7.96 -2.39 -0.02 -0.34 16 39 H 0.06 0.14 7.96 -2.39 -0.02 0.12 16 40 H 0.07 -0.08 7.96 -2.39 -0.02 -0.09 16 41 H 0.06 0.09 7.96 -2.38 -0.02 0.07 16 Total: 0.00 -13.49 338.38 5.65 -7.84 By element: Atomic # 1 Polarization: -7.75 SS G_CDS: 1.13 Total: -6.62 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 5.50 Total: 6.00 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -3.55 Total: -7.68 kcal Atomic # 14 Polarization: -2.11 SS G_CDS: 2.57 Total: 0.46 kcal Total: -13.49 5.65 -7.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419810.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.626 kcal (2) G-P(sol) polarization free energy of solvation -13.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds