Wall clock time and date at job start Mon Mar 8 2021 10:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32599 * 1 3 3 C 1.47745 * 120.00285 * 2 1 4 4 C 1.39826 * 120.14193 * 46.30817 * 3 2 1 5 5 O 1.35926 * 120.14854 * 359.97438 * 4 3 2 6 6 C 1.42898 * 116.99760 * 92.04639 * 5 4 3 7 7 F 1.39897 * 109.47449 * 300.00503 * 6 5 4 8 8 F 1.39908 * 109.47021 * 60.00115 * 6 5 4 9 9 C 1.39002 * 119.70119 * 179.79684 * 4 3 2 10 10 O 1.36003 * 120.00312 * 180.20895 * 9 4 3 11 11 C 1.42898 * 116.99944 * 180.25167 * 10 9 4 12 12 C 1.52999 * 109.47464 * 179.97438 * 11 10 9 13 13 C 1.38580 * 119.99108 * 0.45660 * 9 4 3 14 14 C 1.38413 * 120.29486 * 359.79303 * 13 9 4 15 15 C 1.50703 * 119.85210 * 179.97438 * 14 13 9 16 16 O 1.42895 * 109.47035 * 120.01966 * 15 14 13 17 17 Si 1.86299 * 109.46971 * 0.02562 * 15 14 13 18 18 H 1.48497 * 109.47335 * 299.99813 * 17 15 14 19 19 H 1.48499 * 109.47223 * 60.00250 * 17 15 14 20 20 H 1.48498 * 109.46965 * 180.02562 * 17 15 14 21 21 C 1.37915 * 120.29757 * 359.97438 * 14 13 9 22 22 Si 1.86805 * 119.99947 * 180.27419 * 2 1 3 23 23 C 1.86298 * 109.46955 * 90.50025 * 22 2 1 24 24 C 1.86302 * 109.47099 * 210.49593 * 22 2 1 25 25 C 1.86298 * 109.47110 * 330.50043 * 22 2 1 26 26 H 1.07999 * 120.00254 * 357.26358 * 1 2 3 27 27 H 1.07997 * 119.99966 * 177.25991 * 1 2 3 28 28 H 1.09001 * 109.47605 * 179.97438 * 6 5 4 29 29 H 1.08998 * 109.47406 * 299.99885 * 11 10 9 30 30 H 1.09010 * 109.47107 * 59.99652 * 11 10 9 31 31 H 1.09001 * 109.47040 * 59.99629 * 12 11 10 32 32 H 1.08998 * 109.47702 * 179.97438 * 12 11 10 33 33 H 1.08998 * 109.47042 * 300.00509 * 12 11 10 34 34 H 1.08002 * 119.85470 * 179.76950 * 13 9 4 35 35 H 1.08993 * 109.46663 * 240.02296 * 15 14 13 36 36 H 0.96701 * 113.99813 * 179.97438 * 16 15 14 37 37 H 1.07993 * 120.00098 * 180.02562 * 21 14 13 38 38 H 1.09002 * 109.47308 * 59.99886 * 23 22 2 39 39 H 1.09001 * 109.47294 * 179.97438 * 23 22 2 40 40 H 1.08995 * 109.47413 * 299.99849 * 23 22 2 41 41 H 1.09007 * 109.46882 * 54.85463 * 24 22 2 42 42 H 1.09002 * 109.47180 * 174.84799 * 24 22 2 43 43 H 1.08994 * 109.47751 * 294.85387 * 24 22 2 44 44 H 1.08995 * 109.47121 * 60.00235 * 25 22 2 45 45 H 1.09007 * 109.46917 * 180.02562 * 25 22 2 46 46 H 1.08997 * 109.46714 * 299.99690 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0648 1.2795 0.0000 4 6 1.6925 2.3052 0.8743 5 8 0.6491 2.1298 1.7276 6 6 0.9538 1.6277 3.0303 7 9 1.5611 0.3726 2.9161 8 9 1.8250 2.5101 3.6782 9 6 2.3966 3.5037 0.8696 10 8 2.0425 4.5039 1.7203 11 6 2.8063 5.7100 1.6574 12 6 2.2641 6.7110 2.6796 13 6 3.4562 3.6811 -0.0058 14 6 3.8212 2.6675 -0.8748 15 6 4.9748 2.8714 -1.8229 16 8 5.9821 1.8911 -1.5652 17 14 5.6881 4.5745 -1.5758 18 1 4.6414 5.5933 -1.8435 19 1 6.1669 4.7124 -0.1769 20 1 6.8244 4.7756 -2.5104 21 6 3.1340 1.4717 -0.8769 22 14 2.2600 -1.6178 -0.0077 23 6 2.5837 -2.1394 -1.7666 24 6 3.8812 -1.4031 0.8847 25 6 1.2466 -2.9240 0.8509 26 1 -0.5400 0.9342 0.0447 27 1 -0.5400 -0.9342 -0.0447 28 1 0.0343 1.5355 3.6085 29 1 3.8503 5.4911 1.8812 30 1 2.7308 6.1360 0.6568 31 1 2.3392 6.2852 3.6802 32 1 2.8470 7.6308 2.6319 33 1 1.2202 6.9299 2.4553 34 1 3.9994 4.6145 -0.0102 35 1 4.6233 2.7701 -2.8497 36 1 6.7562 1.9621 -2.1404 37 1 3.4231 0.6840 -1.5567 38 1 3.1767 -1.3751 -2.2691 39 1 3.1291 -3.0832 -1.7712 40 1 1.6353 -2.2650 -2.2888 41 1 3.6963 -1.0104 1.8846 42 1 4.3848 -2.3669 0.9603 43 1 4.5111 -0.7065 0.3315 44 1 0.2981 -3.0496 0.3287 45 1 1.7918 -3.8679 0.8468 46 1 1.0572 -2.6188 1.8800 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419812.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:12:06 Heat of formation + Delta-G solvation = -207.913906 kcal Electronic energy + Delta-G solvation = -30743.771010 eV Core-core repulsion = 26393.955562 eV Total energy + Delta-G solvation = -4349.815449 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.02266 -48.15835 -41.77157 -39.49790 -38.89272 -37.21671 -34.79364 -33.00348 -31.16512 -30.59782 -29.41621 -28.28263 -28.20773 -27.62950 -25.88071 -25.04994 -23.30554 -22.84809 -20.58486 -19.75460 -19.09009 -18.85868 -18.65109 -18.40101 -17.60041 -17.22220 -16.92312 -16.16428 -15.82348 -15.69589 -15.43239 -15.05780 -14.81854 -14.55960 -14.53631 -14.49572 -14.09061 -13.99659 -13.99111 -13.85739 -13.75482 -13.53365 -13.40638 -13.22271 -13.19608 -13.08804 -13.06600 -12.96047 -12.76773 -12.63782 -12.43198 -12.26947 -11.95490 -11.86971 -11.82976 -11.22703 -10.82541 -10.77537 -10.41792 -10.30886 -9.47639 -9.26447 -0.30396 0.10633 1.05243 1.18774 1.36054 1.40510 1.74877 1.82005 1.88629 2.00303 2.05076 2.23579 2.60343 2.70074 2.74457 3.25886 3.51959 3.68246 3.75618 3.77612 3.87340 3.88229 4.03943 4.13683 4.17761 4.20225 4.25026 4.54918 4.69365 4.80813 4.81394 4.81992 4.83778 4.84441 4.87426 4.90093 4.91716 4.95626 5.05452 5.12550 5.21960 5.34653 5.48245 5.58804 5.64960 5.69844 5.71136 5.89237 6.28066 6.79973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.394 4.394 3 C 0.011 3.989 4 C 0.012 3.988 5 O -0.319 6.319 6 C 0.392 3.608 7 F -0.207 7.207 8 F -0.216 7.216 9 C 0.127 3.873 10 O -0.315 6.315 11 C 0.039 3.961 12 C -0.147 4.147 13 C -0.231 4.231 14 C -0.030 4.030 15 C -0.080 4.080 16 O -0.556 6.556 17 Si 0.958 3.042 18 H -0.256 1.256 19 H -0.272 1.272 20 H -0.242 1.242 21 C -0.129 4.129 22 Si 1.094 2.906 23 C -0.451 4.451 24 C -0.462 4.462 25 C -0.452 4.452 26 H 0.089 0.911 27 H 0.128 0.872 28 H 0.213 0.787 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.137 0.863 35 H 0.109 0.891 36 H 0.401 0.599 37 H 0.155 0.845 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 -0.181 -3.024 3.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.433 4.433 3 C 0.011 3.989 4 C -0.032 4.032 5 O -0.238 6.238 6 C 0.303 3.697 7 F -0.189 7.189 8 F -0.198 7.198 9 C 0.080 3.920 10 O -0.228 6.228 11 C -0.035 4.035 12 C -0.204 4.204 13 C -0.249 4.249 14 C -0.030 4.030 15 C -0.191 4.191 16 O -0.365 6.365 17 Si 0.782 3.218 18 H -0.180 1.180 19 H -0.197 1.197 20 H -0.166 1.166 21 C -0.147 4.147 22 Si 1.282 2.718 23 C -0.559 4.559 24 C -0.568 4.568 25 C -0.561 4.561 26 H 0.108 0.892 27 H 0.146 0.854 28 H 0.229 0.771 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.155 0.845 35 H 0.127 0.873 36 H 0.252 0.748 37 H 0.172 0.828 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.383 0.609 -2.312 2.421 hybrid contribution 0.701 0.331 -0.039 0.776 sum 0.317 0.939 -2.351 2.552 Atomic orbital electron populations 1.24538 0.95230 1.02733 0.91563 1.28244 1.01578 1.07112 1.06383 1.19348 0.93945 0.92306 0.93315 1.18141 0.94592 0.92342 0.98125 1.86679 1.30908 1.83461 1.22788 1.24298 0.90506 0.71848 0.82999 1.93039 1.86689 1.43441 1.95773 1.93063 1.74668 1.70281 1.81831 1.19277 0.93234 0.88857 0.90591 1.86171 1.56819 1.23554 1.56270 1.23144 0.95415 0.83216 1.01731 1.21783 1.02742 0.97737 0.98120 1.21104 1.01033 1.02005 1.00775 1.19344 0.95290 0.93490 0.94893 1.24716 0.89997 1.03812 1.00559 1.86466 1.31643 1.54543 1.63885 0.85588 0.80467 0.75339 0.80415 1.17966 1.19726 1.16567 1.21126 0.94999 0.97983 1.00607 0.77717 0.64575 0.62144 0.67349 1.26158 1.05463 1.06035 1.18245 1.26337 1.18108 1.04497 1.07839 1.26162 1.09706 1.12234 1.07957 0.89226 0.85372 0.77122 0.91809 0.90990 0.91928 0.88113 0.91451 0.84528 0.87318 0.74824 0.82779 0.90983 0.90521 0.90487 0.92786 0.90745 0.91626 0.90147 0.90504 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.07 12.73 66.66 0.85 0.78 16 2 C -0.39 -0.96 3.22 23.63 0.08 -0.89 16 3 C 0.01 0.08 5.15 -20.05 -0.10 -0.03 16 4 C 0.01 0.11 5.18 22.84 0.12 0.23 16 5 O -0.32 -2.52 8.07 -78.77 -0.64 -3.16 16 6 C 0.39 1.69 6.35 113.37 0.72 2.41 16 7 F -0.21 -1.27 16.05 44.97 0.72 -0.55 16 8 F -0.22 -2.08 16.17 44.97 0.73 -1.35 16 9 C 0.13 1.32 6.40 22.53 0.14 1.46 16 10 O -0.31 -3.13 9.12 -79.63 -0.73 -3.85 16 11 C 0.04 0.14 5.46 71.98 0.39 0.54 16 12 C -0.15 0.00 10.28 71.98 0.74 0.74 16 13 C -0.23 -1.71 7.66 22.39 0.17 -1.54 16 14 C -0.03 -0.16 5.42 -19.90 -0.11 -0.27 16 15 C -0.08 0.06 2.81 71.24 0.20 0.26 16 16 O -0.56 0.38 12.74 -148.98 -1.90 -1.52 16 17 Si 0.96 -0.49 25.06 68.60 1.72 1.22 16 18 H -0.26 -0.10 7.11 99.48 0.71 0.60 16 19 H -0.27 -1.00 7.11 99.48 0.71 -0.29 16 20 H -0.24 0.51 7.11 99.48 0.71 1.22 16 21 C -0.13 -0.67 8.46 22.53 0.19 -0.47 16 22 Si 1.09 -1.54 11.18 68.60 0.77 -0.77 16 23 C -0.45 1.11 8.65 113.37 0.98 2.09 16 24 C -0.46 -1.50 8.65 113.37 0.98 -0.52 16 25 C -0.45 0.86 8.51 113.37 0.96 1.83 16 26 H 0.09 0.28 7.09 -2.91 -0.02 0.25 16 27 H 0.13 -0.56 7.28 -2.91 -0.02 -0.58 16 28 H 0.21 -1.16 8.14 -2.39 -0.02 -1.18 16 29 H 0.06 0.18 7.66 -2.39 -0.02 0.16 16 30 H 0.07 0.09 7.66 -2.38 -0.02 0.07 16 31 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.10 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.14 0.62 3.07 -2.91 -0.01 0.61 16 35 H 0.11 -0.65 7.96 -2.39 -0.02 -0.66 16 36 H 0.40 -4.04 8.74 -74.06 -0.65 -4.69 16 37 H 0.15 0.17 6.56 -2.91 -0.02 0.15 16 38 H 0.07 -0.17 7.20 -2.39 -0.02 -0.19 16 39 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 40 H 0.08 -0.26 7.96 -2.39 -0.02 -0.28 16 41 H 0.05 0.34 7.96 -2.38 -0.02 0.32 16 42 H 0.07 0.11 7.96 -2.39 -0.02 0.09 16 43 H 0.06 0.32 7.73 -2.39 -0.02 0.30 16 44 H 0.08 -0.32 7.64 -2.39 -0.02 -0.33 16 45 H 0.08 -0.19 7.96 -2.38 -0.02 -0.21 16 46 H 0.07 -0.03 7.96 -2.39 -0.02 -0.05 16 Total: 0.00 -16.80 383.56 8.09 -8.71 By element: Atomic # 1 Polarization: -6.45 SS G_CDS: 1.10 Total: -5.35 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 6.32 Total: 6.62 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -3.26 Total: -8.54 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 1.45 Total: -1.90 kcal Atomic # 14 Polarization: -2.03 SS G_CDS: 2.49 Total: 0.46 kcal Total: -16.80 8.09 -8.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419812.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.206 kcal (2) G-P(sol) polarization free energy of solvation -16.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds