Wall clock time and date at job start Mon Mar 8 2021 10:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32605 * 1 3 3 C 1.47743 * 120.00437 * 2 1 4 4 C 1.39828 * 120.13942 * 47.80455 * 3 2 1 5 5 O 1.35920 * 120.14940 * 0.02562 * 4 3 2 6 6 C 1.42905 * 116.99840 * 95.04018 * 5 4 3 7 7 F 1.39903 * 109.46773 * 299.99589 * 6 5 4 8 8 F 1.39898 * 109.47248 * 59.99782 * 6 5 4 9 9 C 1.39006 * 119.69899 * 179.97438 * 4 3 2 10 10 O 1.35997 * 120.00146 * 180.02562 * 9 4 3 11 11 C 1.42902 * 116.99872 * 179.97438 * 10 9 4 12 12 C 1.38585 * 119.99084 * 359.72620 * 9 4 3 13 13 C 1.38412 * 120.29424 * 0.54921 * 12 9 4 14 14 C 1.50692 * 119.85316 * 179.72185 * 13 12 9 15 15 O 1.42899 * 109.46982 * 119.72665 * 14 13 12 16 16 Si 1.86309 * 109.47025 * 359.73170 * 14 13 12 17 17 H 1.48496 * 109.47160 * 180.02562 * 16 14 13 18 18 H 1.48501 * 109.46798 * 299.99522 * 16 14 13 19 19 H 1.48494 * 109.47323 * 59.99665 * 16 14 13 20 20 C 1.37922 * 120.29616 * 359.44963 * 13 12 9 21 21 Si 1.86804 * 119.99772 * 180.02562 * 2 1 3 22 22 C 1.86302 * 109.47221 * 275.15875 * 21 2 1 23 23 C 1.86306 * 109.47077 * 35.15929 * 21 2 1 24 24 C 1.86301 * 109.46863 * 155.15751 * 21 2 1 25 25 H 1.08008 * 119.99712 * 5.25438 * 1 2 3 26 26 H 1.07994 * 120.00549 * 185.25634 * 1 2 3 27 27 H 1.09001 * 109.46954 * 180.02562 * 6 5 4 28 28 H 1.09000 * 109.47131 * 60.00060 * 11 10 9 29 29 H 1.09004 * 109.46871 * 180.02562 * 11 10 9 30 30 H 1.09002 * 109.46818 * 299.99369 * 11 10 9 31 31 H 1.08005 * 119.85123 * 180.27520 * 12 9 4 32 32 H 1.08993 * 109.47332 * 239.72797 * 14 13 12 33 33 H 0.96702 * 114.00287 * 299.99726 * 15 14 13 34 34 H 1.07996 * 119.99849 * 180.24536 * 20 13 12 35 35 H 1.08993 * 109.47099 * 59.99894 * 22 21 2 36 36 H 1.08997 * 109.47129 * 180.02562 * 22 21 2 37 37 H 1.09001 * 109.46756 * 300.00110 * 22 21 2 38 38 H 1.08996 * 109.47096 * 59.99553 * 23 21 2 39 39 H 1.08997 * 109.47057 * 179.97438 * 23 21 2 40 40 H 1.09007 * 109.46564 * 299.99891 * 23 21 2 41 41 H 1.08996 * 109.47512 * 54.84786 * 24 21 2 42 42 H 1.09004 * 109.47103 * 174.84928 * 24 21 2 43 43 H 1.08998 * 109.47471 * 294.84300 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0649 1.2794 0.0000 4 6 1.7126 2.2936 0.8959 5 8 0.6894 2.1065 1.7708 6 6 1.0315 1.6504 3.0812 7 9 1.6791 0.4136 2.9901 8 9 1.8824 2.5787 3.6907 9 6 2.4143 3.4935 0.8883 10 8 2.0772 4.4838 1.7573 11 6 2.8411 5.6899 1.6945 12 6 3.4613 3.6782 -0.0006 13 6 3.8061 2.6762 -0.8911 14 6 4.9423 2.8900 -1.8577 15 8 5.9536 1.9067 -1.6289 16 14 5.6608 4.5903 -1.6051 17 1 6.7801 4.8012 -2.5579 18 1 4.6098 5.6121 -1.8429 19 1 6.1648 4.7131 -0.2137 20 6 3.1180 1.4809 -0.8940 21 14 2.2600 -1.6178 -0.0007 22 6 2.4337 -2.2354 1.7483 23 6 1.3268 -2.8731 -1.0128 24 6 3.9509 -1.3583 -0.7386 25 1 -0.5400 0.9315 -0.0857 26 1 -0.5401 -0.9313 0.0857 27 1 0.1249 1.5424 3.6765 28 1 2.7476 6.1279 0.7007 29 1 2.4698 6.3943 2.4389 30 1 3.8889 5.4672 1.8964 31 1 4.0078 4.6097 -0.0015 32 1 4.5723 2.7999 -2.8789 33 1 6.3290 1.9285 -0.7379 34 1 3.3937 0.7009 -1.5883 35 1 1.4445 -2.3872 2.1800 36 1 2.9791 -3.1791 1.7479 37 1 2.9797 -1.5009 2.3404 38 1 1.2251 -2.5118 -2.0361 39 1 1.8720 -3.8170 -1.0136 40 1 0.3375 -3.0249 -0.5810 41 1 4.4625 -0.5590 -0.2025 42 1 4.5286 -2.2789 -0.6558 43 1 3.8510 -1.0853 -1.7891 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:09 Heat of formation + Delta-G solvation = -208.363356 kcal Electronic energy + Delta-G solvation = -28725.509864 eV Core-core repulsion = 24531.212545 eV Total energy + Delta-G solvation = -4194.297319 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.121 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.87647 -47.99558 -41.66762 -39.26026 -38.94050 -37.12671 -34.67111 -31.63160 -30.78959 -29.50708 -28.53316 -28.35018 -28.21579 -27.42214 -25.60362 -23.98024 -22.82537 -20.60396 -19.75666 -19.00670 -18.81973 -18.63676 -17.72603 -17.34181 -16.99135 -16.64366 -16.16115 -16.13675 -15.69517 -15.41151 -15.08448 -14.77592 -14.63566 -14.38628 -14.30360 -14.23278 -13.95792 -13.87663 -13.76053 -13.47616 -13.32579 -13.22563 -13.11435 -13.00759 -12.97074 -12.89018 -12.80323 -12.32341 -12.27608 -12.11301 -11.91177 -11.76558 -11.22684 -10.83931 -10.82399 -10.50447 -10.41003 -9.38658 -9.14929 -0.21515 0.21841 1.04350 1.18136 1.33182 1.40757 1.73302 1.81826 1.90614 1.96523 2.14001 2.22953 2.60729 2.74934 2.78396 3.37986 3.49287 3.63183 3.66174 3.88003 3.96749 4.10197 4.14237 4.23512 4.32158 4.37567 4.50412 4.58278 4.72859 4.74117 4.81593 4.84288 4.86312 4.86996 4.89718 4.93905 5.15635 5.25704 5.41763 5.48430 5.58091 5.62226 5.66962 5.73723 5.92541 6.38094 6.47897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.380 4.380 3 C 0.014 3.986 4 C 0.037 3.963 5 O -0.313 6.313 6 C 0.401 3.599 7 F -0.199 7.199 8 F -0.200 7.200 9 C 0.139 3.861 10 O -0.299 6.299 11 C 0.022 3.978 12 C -0.219 4.219 13 C -0.070 4.070 14 C -0.080 4.080 15 O -0.533 6.533 16 Si 0.942 3.058 17 H -0.249 1.249 18 H -0.250 1.250 19 H -0.251 1.251 20 C -0.126 4.126 21 Si 1.047 2.953 22 C -0.443 4.443 23 C -0.448 4.448 24 C -0.446 4.446 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.170 0.830 28 H 0.057 0.943 29 H 0.106 0.894 30 H 0.056 0.944 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.377 0.623 34 H 0.149 0.851 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 0.126 0.019 0.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.420 4.420 3 C 0.014 3.986 4 C -0.006 4.006 5 O -0.233 6.233 6 C 0.312 3.688 7 F -0.180 7.180 8 F -0.182 7.182 9 C 0.092 3.908 10 O -0.211 6.211 11 C -0.073 4.073 12 C -0.238 4.238 13 C -0.070 4.070 14 C -0.191 4.191 15 O -0.338 6.338 16 Si 0.764 3.236 17 H -0.173 1.173 18 H -0.174 1.174 19 H -0.174 1.174 20 C -0.144 4.144 21 Si 1.238 2.762 22 C -0.551 4.551 23 C -0.556 4.556 24 C -0.554 4.554 25 H 0.117 0.883 26 H 0.123 0.877 27 H 0.186 0.814 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.141 0.859 33 H 0.224 0.776 34 H 0.166 0.834 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.345 0.914 -0.330 1.031 hybrid contribution 0.201 0.161 0.628 0.679 sum -0.144 1.075 0.298 1.125 Atomic orbital electron populations 1.24326 0.95364 1.02016 0.92318 1.27859 1.01107 1.07110 1.05960 1.19065 0.93958 0.91813 0.93802 1.17870 0.94446 0.91666 0.96642 1.86708 1.30940 1.84722 1.20889 1.23569 0.89127 0.72597 0.83549 1.93082 1.84690 1.44363 1.95912 1.93098 1.74919 1.66928 1.83211 1.19125 0.92877 0.88721 0.90074 1.86203 1.56726 1.23604 1.54613 1.23183 0.96183 0.84780 1.03167 1.21013 1.01089 1.01272 1.00393 1.20102 0.97158 0.93885 0.95891 1.24985 0.88775 1.03979 1.01371 1.86534 1.53703 1.56688 1.36843 0.85797 0.80881 0.75471 0.81431 1.17300 1.17382 1.17417 1.21234 0.95067 0.97816 1.00290 0.78409 0.66485 0.63324 0.67963 1.26096 1.04642 1.05926 1.18411 1.26142 1.08443 1.11665 1.09302 1.26287 1.17207 1.05040 1.06854 0.88297 0.87657 0.81401 0.92442 0.87550 0.92507 0.85225 0.85859 0.77583 0.83355 0.91298 0.91331 0.90896 0.91041 0.90889 0.91229 0.90613 0.91079 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.00 12.55 28.83 0.36 0.37 16 2 C -0.38 -0.16 3.59 -37.60 -0.14 -0.29 16 3 C 0.01 0.03 5.18 -104.91 -0.54 -0.52 16 4 C 0.04 0.12 5.21 -38.70 -0.20 -0.08 16 5 O -0.31 -0.86 8.36 -34.08 -0.29 -1.14 16 6 C 0.40 0.43 6.35 101.05 0.64 1.07 16 7 F -0.20 -0.36 15.08 2.25 0.03 -0.33 16 8 F -0.20 -0.64 15.83 2.25 0.04 -0.61 16 9 C 0.14 0.45 6.37 -39.17 -0.25 0.20 16 10 O -0.30 -0.94 9.16 -34.33 -0.31 -1.25 16 11 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 12 C -0.22 -0.36 7.66 -39.39 -0.30 -0.66 16 13 C -0.07 -0.06 5.39 -104.68 -0.56 -0.63 16 14 C -0.08 0.05 2.82 36.00 0.10 0.15 16 15 O -0.53 0.12 12.76 -35.23 -0.45 -0.33 16 16 Si 0.94 -0.58 25.06 -169.99 -4.26 -4.83 16 17 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 18 H -0.25 0.05 7.11 56.52 0.40 0.45 16 19 H -0.25 0.13 7.11 56.52 0.40 0.53 16 20 C -0.13 -0.15 7.56 -39.19 -0.30 -0.44 16 21 Si 1.05 -1.45 12.05 -169.99 -2.05 -3.49 16 22 C -0.44 0.08 8.21 101.05 0.83 0.91 16 23 C -0.45 0.57 8.65 101.05 0.87 1.45 16 24 C -0.45 0.37 7.11 101.05 0.72 1.09 16 25 H 0.10 0.08 7.57 -52.48 -0.40 -0.31 16 26 H 0.11 -0.20 7.60 -52.49 -0.40 -0.60 16 27 H 0.17 -0.51 8.14 -51.93 -0.42 -0.94 16 28 H 0.06 -0.07 7.67 -51.93 -0.40 -0.47 16 29 H 0.11 -0.22 8.14 -51.93 -0.42 -0.65 16 30 H 0.06 -0.07 7.65 -51.93 -0.40 -0.46 16 31 H 0.13 0.02 3.07 -52.48 -0.16 -0.14 16 32 H 0.12 -0.20 7.96 -51.93 -0.41 -0.61 16 33 H 0.38 -1.17 8.70 45.56 0.40 -0.78 16 34 H 0.15 -0.01 5.17 -52.49 -0.27 -0.28 16 35 H 0.07 -0.01 7.96 -51.93 -0.41 -0.43 16 36 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 37 H 0.07 0.07 6.99 -51.93 -0.36 -0.30 16 38 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 39 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 40 H 0.07 -0.11 7.84 -51.92 -0.41 -0.51 16 41 H 0.07 -0.02 6.98 -51.93 -0.36 -0.38 16 42 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 43 H 0.07 -0.07 6.84 -51.93 -0.36 -0.43 16 LS Contribution 356.21 15.07 5.37 5.37 Total: 0.00 -6.12 356.21 -4.93 -11.05 By element: Atomic # 1 Polarization: -2.80 SS G_CDS: -5.24 Total: -8.03 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 2.23 Total: 3.60 kcal Atomic # 8 Polarization: -1.67 SS G_CDS: -1.05 Total: -2.72 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.07 Total: -0.94 kcal Atomic # 14 Polarization: -2.02 SS G_CDS: -6.31 Total: -8.33 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -6.12 -4.93 -11.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.316 kcal (2) G-P(sol) polarization free energy of solvation -6.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds