Wall clock time and date at job start Mon Mar 8 2021 10:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32605 * 1 3 3 C 1.47743 * 120.00437 * 2 1 4 4 C 1.39828 * 120.13942 * 47.80455 * 3 2 1 5 5 O 1.35920 * 120.14940 * 0.02562 * 4 3 2 6 6 C 1.42905 * 116.99840 * 95.04018 * 5 4 3 7 7 F 1.39903 * 109.46773 * 299.99589 * 6 5 4 8 8 F 1.39898 * 109.47248 * 59.99782 * 6 5 4 9 9 C 1.39006 * 119.69899 * 179.97438 * 4 3 2 10 10 O 1.35997 * 120.00146 * 180.02562 * 9 4 3 11 11 C 1.42902 * 116.99872 * 179.97438 * 10 9 4 12 12 C 1.38585 * 119.99084 * 359.72620 * 9 4 3 13 13 C 1.38412 * 120.29424 * 0.54921 * 12 9 4 14 14 C 1.50692 * 119.85316 * 179.72185 * 13 12 9 15 15 O 1.42899 * 109.46982 * 119.72665 * 14 13 12 16 16 Si 1.86309 * 109.47025 * 359.73170 * 14 13 12 17 17 H 1.48496 * 109.47160 * 180.02562 * 16 14 13 18 18 H 1.48501 * 109.46798 * 299.99522 * 16 14 13 19 19 H 1.48494 * 109.47323 * 59.99665 * 16 14 13 20 20 C 1.37922 * 120.29616 * 359.44963 * 13 12 9 21 21 Si 1.86804 * 119.99772 * 180.02562 * 2 1 3 22 22 C 1.86302 * 109.47221 * 275.15875 * 21 2 1 23 23 C 1.86306 * 109.47077 * 35.15929 * 21 2 1 24 24 C 1.86301 * 109.46863 * 155.15751 * 21 2 1 25 25 H 1.08008 * 119.99712 * 5.25438 * 1 2 3 26 26 H 1.07994 * 120.00549 * 185.25634 * 1 2 3 27 27 H 1.09001 * 109.46954 * 180.02562 * 6 5 4 28 28 H 1.09000 * 109.47131 * 60.00060 * 11 10 9 29 29 H 1.09004 * 109.46871 * 180.02562 * 11 10 9 30 30 H 1.09002 * 109.46818 * 299.99369 * 11 10 9 31 31 H 1.08005 * 119.85123 * 180.27520 * 12 9 4 32 32 H 1.08993 * 109.47332 * 239.72797 * 14 13 12 33 33 H 0.96702 * 114.00287 * 299.99726 * 15 14 13 34 34 H 1.07996 * 119.99849 * 180.24536 * 20 13 12 35 35 H 1.08993 * 109.47099 * 59.99894 * 22 21 2 36 36 H 1.08997 * 109.47129 * 180.02562 * 22 21 2 37 37 H 1.09001 * 109.46756 * 300.00110 * 22 21 2 38 38 H 1.08996 * 109.47096 * 59.99553 * 23 21 2 39 39 H 1.08997 * 109.47057 * 179.97438 * 23 21 2 40 40 H 1.09007 * 109.46564 * 299.99891 * 23 21 2 41 41 H 1.08996 * 109.47512 * 54.84786 * 24 21 2 42 42 H 1.09004 * 109.47103 * 174.84928 * 24 21 2 43 43 H 1.08998 * 109.47471 * 294.84300 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0649 1.2794 0.0000 4 6 1.7126 2.2936 0.8959 5 8 0.6894 2.1065 1.7708 6 6 1.0315 1.6504 3.0812 7 9 1.6791 0.4136 2.9901 8 9 1.8824 2.5787 3.6907 9 6 2.4143 3.4935 0.8883 10 8 2.0772 4.4838 1.7573 11 6 2.8411 5.6899 1.6945 12 6 3.4613 3.6782 -0.0006 13 6 3.8061 2.6762 -0.8911 14 6 4.9423 2.8900 -1.8577 15 8 5.9536 1.9067 -1.6289 16 14 5.6608 4.5903 -1.6051 17 1 6.7801 4.8012 -2.5579 18 1 4.6098 5.6121 -1.8429 19 1 6.1648 4.7131 -0.2137 20 6 3.1180 1.4809 -0.8940 21 14 2.2600 -1.6178 -0.0007 22 6 2.4337 -2.2354 1.7483 23 6 1.3268 -2.8731 -1.0128 24 6 3.9509 -1.3583 -0.7386 25 1 -0.5400 0.9315 -0.0857 26 1 -0.5401 -0.9313 0.0857 27 1 0.1249 1.5424 3.6765 28 1 2.7476 6.1279 0.7007 29 1 2.4698 6.3943 2.4389 30 1 3.8889 5.4672 1.8964 31 1 4.0078 4.6097 -0.0015 32 1 4.5723 2.7999 -2.8789 33 1 6.3290 1.9285 -0.7379 34 1 3.3937 0.7009 -1.5883 35 1 1.4445 -2.3872 2.1800 36 1 2.9791 -3.1791 1.7479 37 1 2.9797 -1.5009 2.3404 38 1 1.2251 -2.5118 -2.0361 39 1 1.8720 -3.8170 -1.0136 40 1 0.3375 -3.0249 -0.5810 41 1 4.4625 -0.5590 -0.2025 42 1 4.5286 -2.2789 -0.6558 43 1 3.8510 -1.0853 -1.7891 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:08 Heat of formation + Delta-G solvation = -201.839684 kcal Electronic energy + Delta-G solvation = -28725.226977 eV Core-core repulsion = 24531.212545 eV Total energy + Delta-G solvation = -4194.014432 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 332.121 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.99341 -48.12619 -41.74569 -39.34713 -38.98233 -37.13702 -34.68212 -31.68593 -30.81756 -29.42546 -28.51899 -28.29625 -28.13061 -27.45282 -25.63368 -24.02179 -22.89438 -20.64795 -19.83461 -19.07082 -18.86626 -18.72009 -17.78595 -17.37247 -17.06273 -16.70518 -16.16118 -16.11383 -15.68541 -15.47367 -15.14192 -14.86983 -14.66453 -14.50534 -14.37716 -14.21552 -13.87186 -13.84483 -13.70816 -13.46849 -13.34470 -13.16481 -13.11605 -12.98521 -12.93183 -12.86013 -12.76986 -12.33418 -12.28261 -12.13407 -11.93122 -11.77766 -11.19396 -10.83053 -10.73371 -10.47769 -10.38686 -9.45695 -9.23224 -0.28888 0.12462 1.08394 1.19554 1.37094 1.43444 1.78576 1.83742 1.93636 2.03277 2.16012 2.25962 2.62651 2.71967 2.75055 3.42046 3.49807 3.60903 3.70195 3.81191 3.96008 4.13152 4.18504 4.21635 4.26087 4.38083 4.58664 4.63540 4.81587 4.84802 4.86298 4.88913 4.90720 4.90784 4.91858 4.95910 5.10521 5.21296 5.38521 5.51144 5.62443 5.67798 5.70708 5.74493 5.90059 6.29496 6.65377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.395 4.395 3 C 0.007 3.993 4 C 0.015 3.985 5 O -0.321 6.321 6 C 0.392 3.608 7 F -0.205 7.205 8 F -0.215 7.215 9 C 0.121 3.879 10 O -0.319 6.319 11 C 0.013 3.987 12 C -0.225 4.225 13 C -0.069 4.069 14 C -0.077 4.077 15 O -0.543 6.543 16 Si 0.965 3.035 17 H -0.266 1.266 18 H -0.256 1.256 19 H -0.252 1.252 20 C -0.131 4.131 21 Si 1.097 2.903 22 C -0.456 4.456 23 C -0.453 4.453 24 C -0.456 4.456 25 H 0.086 0.914 26 H 0.126 0.874 27 H 0.210 0.790 28 H 0.065 0.935 29 H 0.121 0.879 30 H 0.062 0.938 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.388 0.612 34 H 0.160 0.840 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.289 -0.477 -0.362 0.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.434 4.434 3 C 0.007 3.993 4 C -0.029 4.029 5 O -0.241 6.241 6 C 0.304 3.696 7 F -0.187 7.187 8 F -0.197 7.197 9 C 0.074 3.926 10 O -0.232 6.232 11 C -0.081 4.081 12 C -0.244 4.244 13 C -0.070 4.070 14 C -0.188 4.188 15 O -0.349 6.349 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.180 1.180 19 H -0.176 1.176 20 C -0.149 4.149 21 Si 1.285 2.715 22 C -0.562 4.562 23 C -0.561 4.561 24 C -0.563 4.563 25 H 0.104 0.896 26 H 0.144 0.856 27 H 0.226 0.774 28 H 0.083 0.917 29 H 0.140 0.860 30 H 0.081 0.919 31 H 0.158 0.842 32 H 0.153 0.847 33 H 0.237 0.763 34 H 0.177 0.823 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.413 0.324 -0.689 0.867 hybrid contribution 0.234 0.372 0.771 0.888 sum -0.179 0.696 0.082 0.723 Atomic orbital electron populations 1.24451 0.95322 1.02391 0.91845 1.28259 1.01492 1.07338 1.06266 1.19314 0.94259 0.92202 0.93548 1.18168 0.95016 0.92282 0.97413 1.86679 1.31140 1.84857 1.21401 1.24253 0.90062 0.71915 0.83413 1.93065 1.85013 1.44649 1.95932 1.93062 1.75636 1.67572 1.83406 1.19366 0.93580 0.88982 0.90670 1.86165 1.57657 1.24468 1.54912 1.23417 0.96422 0.84063 1.04234 1.21172 1.00916 1.01959 1.00311 1.20290 0.97322 0.93599 0.95766 1.25016 0.88232 1.03903 1.01601 1.86507 1.53681 1.56775 1.37972 0.85459 0.79790 0.75104 0.80682 1.19060 1.17984 1.17590 1.21431 0.94905 0.98236 1.00309 0.77663 0.65476 0.61852 0.66521 1.26264 1.04506 1.05892 1.19523 1.26180 1.08771 1.11728 1.09400 1.26394 1.17800 1.05011 1.07117 0.89600 0.85623 0.77445 0.91653 0.86041 0.91911 0.84215 0.84725 0.76265 0.82254 0.91271 0.90902 0.92238 0.90837 0.90561 0.90743 0.91264 0.90708 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.00 12.55 66.66 0.84 0.83 16 2 C -0.39 -0.41 3.59 23.63 0.08 -0.33 16 3 C 0.01 0.03 5.18 -20.05 -0.10 -0.07 16 4 C 0.01 0.11 5.21 22.84 0.12 0.23 16 5 O -0.32 -2.10 8.36 -78.69 -0.66 -2.76 16 6 C 0.39 1.09 6.35 113.37 0.72 1.81 16 7 F -0.20 -0.90 15.08 44.97 0.68 -0.23 16 8 F -0.21 -1.63 15.83 44.97 0.71 -0.91 16 9 C 0.12 0.92 6.37 22.54 0.14 1.07 16 10 O -0.32 -2.39 9.16 -79.56 -0.73 -3.12 16 11 C 0.01 0.00 9.81 113.37 1.11 1.11 16 12 C -0.23 -0.89 7.66 22.39 0.17 -0.72 16 13 C -0.07 -0.15 5.39 -19.90 -0.11 -0.25 16 14 C -0.08 0.10 2.82 71.23 0.20 0.30 16 15 O -0.54 0.42 12.76 -148.98 -1.90 -1.48 16 16 Si 0.97 -1.14 25.06 68.60 1.72 0.58 16 17 H -0.27 -0.42 7.11 99.48 0.71 0.29 16 18 H -0.26 0.08 7.11 99.48 0.71 0.79 16 19 H -0.25 0.27 7.11 99.48 0.71 0.98 16 20 C -0.13 -0.35 7.56 22.53 0.17 -0.18 16 21 Si 1.10 -3.37 12.05 68.60 0.83 -2.55 16 22 C -0.46 0.10 8.21 113.37 0.93 1.03 16 23 C -0.45 1.65 8.65 113.37 0.98 2.63 16 24 C -0.46 0.88 7.11 113.37 0.81 1.69 16 25 H 0.09 0.22 7.57 -2.91 -0.02 0.20 16 26 H 0.13 -0.58 7.60 -2.91 -0.02 -0.61 16 27 H 0.21 -1.34 8.14 -2.39 -0.02 -1.36 16 28 H 0.06 -0.14 7.67 -2.39 -0.02 -0.16 16 29 H 0.12 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H 0.06 -0.11 7.65 -2.39 -0.02 -0.13 16 31 H 0.14 0.11 3.07 -2.91 -0.01 0.10 16 32 H 0.14 -0.51 7.96 -2.39 -0.02 -0.53 16 33 H 0.39 -2.46 8.70 -74.06 -0.64 -3.11 16 34 H 0.16 -0.04 5.17 -2.91 -0.02 -0.06 16 35 H 0.07 -0.03 7.96 -2.39 -0.02 -0.05 16 36 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 37 H 0.06 0.16 6.99 -2.39 -0.02 0.14 16 38 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 39 H 0.08 -0.30 7.96 -2.39 -0.02 -0.32 16 40 H 0.07 -0.32 7.84 -2.38 -0.02 -0.34 16 41 H 0.07 -0.03 6.98 -2.39 -0.02 -0.04 16 42 H 0.07 -0.20 7.96 -2.38 -0.02 -0.21 16 43 H 0.08 -0.20 6.84 -2.39 -0.02 -0.22 16 Total: 0.00 -14.70 356.21 7.86 -6.83 By element: Atomic # 1 Polarization: -6.68 SS G_CDS: 1.15 Total: -5.53 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 6.07 Total: 9.15 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -3.29 Total: -7.35 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 1.39 Total: -1.14 kcal Atomic # 14 Polarization: -4.51 SS G_CDS: 2.55 Total: -1.97 kcal Total: -14.70 7.86 -6.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.007 kcal (2) G-P(sol) polarization free energy of solvation -14.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds