Wall clock time and date at job start Mon Mar 8 2021 10:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32597 * 1 3 3 C 1.47776 * 119.99791 * 2 1 4 4 C 1.39555 * 120.08411 * 180.02562 * 3 2 1 5 5 C 1.37880 * 119.91545 * 179.97438 * 4 3 2 6 6 C 1.38835 * 120.08232 * 359.97438 * 5 4 3 7 7 O 1.35865 * 119.91296 * 180.02562 * 6 5 4 8 8 C 1.42899 * 116.99998 * 0.02562 * 7 6 5 9 9 C 1.53004 * 109.47154 * 180.02562 * 8 7 6 10 10 O 1.42895 * 109.46976 * 64.99725 * 9 8 7 11 11 C 1.42904 * 113.99876 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47084 * 180.02562 * 11 10 9 13 13 C 1.38882 * 120.17727 * 0.04038 * 6 5 4 14 14 C 1.50696 * 119.96218 * 179.97438 * 13 6 5 15 15 O 1.42900 * 109.46984 * 285.00514 * 14 13 6 16 16 Si 1.86295 * 109.47479 * 165.00613 * 14 13 6 17 17 H 1.48498 * 109.46989 * 59.99653 * 16 14 13 18 18 H 1.48494 * 109.47513 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46934 * 300.00279 * 16 14 13 20 20 C 1.37839 * 120.08017 * 359.70819 * 13 6 5 21 21 Si 1.86801 * 119.99996 * 179.97438 * 2 1 3 22 22 C 1.86300 * 109.46957 * 359.97438 * 21 2 1 23 23 C 1.86298 * 109.47026 * 120.00101 * 21 2 1 24 24 C 1.86301 * 109.47053 * 240.00115 * 21 2 1 25 25 H 1.08002 * 120.00233 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.99999 * 359.72499 * 1 2 3 27 27 H 1.08008 * 120.04338 * 359.97438 * 4 3 2 28 28 H 1.07994 * 119.95739 * 180.02562 * 5 4 3 29 29 H 1.09004 * 109.46950 * 300.00120 * 8 7 6 30 30 H 1.08996 * 109.47459 * 60.00039 * 8 7 6 31 31 H 1.09007 * 109.46936 * 185.00015 * 9 8 7 32 32 H 1.08994 * 109.46808 * 304.99737 * 9 8 7 33 33 H 1.08999 * 109.46997 * 300.00358 * 11 10 9 34 34 H 1.08994 * 109.47133 * 59.99870 * 11 10 9 35 35 H 1.08998 * 109.46822 * 299.99699 * 12 11 10 36 36 H 1.09000 * 109.47087 * 60.00065 * 12 11 10 37 37 H 1.09005 * 109.46712 * 179.97438 * 12 11 10 38 38 H 1.09005 * 109.46792 * 45.00121 * 14 13 6 39 39 H 0.96703 * 113.99991 * 300.00157 * 15 14 13 40 40 H 1.07996 * 120.04068 * 180.29552 * 20 13 6 41 41 H 1.09003 * 109.46704 * 60.00197 * 22 21 2 42 42 H 1.09003 * 109.46993 * 180.02562 * 22 21 2 43 43 H 1.08999 * 109.47326 * 299.99568 * 22 21 2 44 44 H 1.08998 * 109.47156 * 60.00082 * 23 21 2 45 45 H 1.08995 * 109.46874 * 180.02562 * 23 21 2 46 46 H 1.08997 * 109.46887 * 299.99740 * 23 21 2 47 47 H 1.09004 * 109.47199 * 59.99984 * 24 21 2 48 48 H 1.08998 * 109.47265 * 180.02562 * 24 21 2 49 49 H 1.09007 * 109.47146 * 300.00054 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0648 1.2798 0.0000 4 6 3.4603 1.2819 -0.0005 5 6 4.1462 2.4780 -0.0011 6 6 3.4502 3.6793 -0.0016 7 8 4.1295 4.8559 -0.0027 8 6 5.5565 4.7812 -0.0037 9 6 6.1413 6.1951 -0.0042 10 8 5.7980 6.8528 1.2171 11 6 6.2990 8.1873 1.3192 12 6 5.8739 8.7904 2.6595 13 6 2.0613 3.6815 -0.0008 14 6 1.3107 4.9882 -0.0008 15 8 1.3768 5.5754 1.3003 16 14 -0.4700 4.6816 -0.4540 17 1 -1.0812 3.7596 0.5368 18 1 -1.2095 5.9693 -0.4546 19 1 -0.5386 4.0712 -1.8061 20 6 1.3686 2.4898 -0.0055 21 14 2.2600 -1.6177 0.0007 22 6 1.0493 -3.0337 0.0021 23 6 3.3310 -1.7171 -1.5203 24 6 3.3310 -1.7157 1.5219 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0045 27 1 4.0025 0.3477 -0.0005 28 1 5.2261 2.4804 -0.0019 29 1 5.8931 4.2494 0.8863 30 1 5.8918 4.2487 -0.8937 31 1 7.2262 6.1395 -0.0946 32 1 5.7348 6.7560 -0.8457 33 1 7.3871 8.1727 1.2565 34 1 5.8963 8.7898 0.5051 35 1 4.7858 8.8050 2.7225 36 1 6.2770 8.1877 3.4733 37 1 6.2565 9.8081 2.7375 38 1 1.7595 5.6649 -0.7280 39 1 0.9949 5.0269 1.9992 40 1 0.2887 2.4922 -0.0096 41 1 0.4223 -2.9765 -0.8877 42 1 1.5943 -3.9777 0.0030 43 1 0.4230 -2.9755 0.8923 44 1 4.0393 -0.8886 -1.5207 45 1 3.8757 -2.6612 -1.5201 46 1 2.7044 -1.6598 -2.4103 47 1 2.7043 -1.6576 2.4119 48 1 3.8764 -2.6595 1.5222 49 1 4.0394 -0.8872 1.5216 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:17:50 Heat of formation + Delta-G solvation = -117.850329 kcal Electronic energy + Delta-G solvation = -25911.722498 eV Core-core repulsion = 22349.182831 eV Total energy + Delta-G solvation = -3562.539667 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.34199 -39.33432 -38.35971 -37.53951 -34.49822 -32.98045 -32.60439 -30.54429 -29.64757 -29.53759 -28.42679 -28.24539 -26.58353 -24.94847 -23.66723 -23.35025 -22.21836 -20.28907 -19.41268 -17.96453 -17.80030 -17.23651 -17.01174 -16.51593 -16.33917 -16.26461 -15.67415 -15.28539 -14.97969 -14.77641 -14.69817 -14.42656 -14.18568 -14.07241 -14.01212 -13.75917 -13.64921 -13.40638 -13.36940 -13.23157 -13.19018 -13.11260 -12.82530 -12.61053 -12.46308 -12.35782 -12.19376 -12.10099 -11.93259 -11.75708 -11.61147 -11.22479 -10.93820 -10.71417 -10.54715 -10.45857 -10.21321 -9.92843 -8.64295 0.07329 0.29981 1.22441 1.34916 1.44900 1.57064 1.69257 1.81716 1.96209 2.10892 2.22436 2.52653 2.67135 2.92685 3.60831 3.74270 3.84432 3.87998 3.94955 4.04517 4.15343 4.17746 4.23782 4.30304 4.35533 4.39490 4.49166 4.51207 4.66010 4.67242 4.67363 4.69300 4.71549 4.72564 4.74556 4.77511 4.83297 4.86422 4.95679 5.05821 5.12897 5.29419 5.31811 5.39313 5.42486 5.49654 5.52364 5.56643 5.77442 5.93787 6.24199 6.49877 6.74383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.362 4.362 3 C -0.068 4.068 4 C -0.075 4.075 5 C -0.207 4.207 6 C 0.157 3.843 7 O -0.292 6.292 8 C 0.059 3.941 9 C 0.064 3.936 10 O -0.379 6.379 11 C 0.057 3.943 12 C -0.152 4.152 13 C -0.150 4.150 14 C -0.065 4.065 15 O -0.530 6.530 16 Si 0.941 3.059 17 H -0.252 1.252 18 H -0.252 1.252 19 H -0.248 1.248 20 C -0.089 4.089 21 Si 1.045 2.955 22 C -0.450 4.450 23 C -0.450 4.450 24 C -0.450 4.450 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.371 0.629 40 H 0.129 0.871 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.054 -1.840 -1.025 2.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.403 4.403 3 C -0.068 4.068 4 C -0.093 4.093 5 C -0.226 4.226 6 C 0.111 3.889 7 O -0.205 6.205 8 C -0.017 4.017 9 C -0.012 4.012 10 O -0.299 6.299 11 C -0.019 4.019 12 C -0.209 4.209 13 C -0.151 4.151 14 C -0.176 4.176 15 O -0.334 6.334 16 Si 0.764 3.236 17 H -0.176 1.176 18 H -0.175 1.175 19 H -0.172 1.172 20 C -0.107 4.107 21 Si 1.237 2.763 22 C -0.558 4.558 23 C -0.557 4.557 24 C -0.557 4.557 25 H 0.126 0.874 26 H 0.110 0.890 27 H 0.150 0.850 28 H 0.149 0.851 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.133 0.867 39 H 0.217 0.783 40 H 0.147 0.853 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.274 -1.307 -1.442 2.326 hybrid contribution 0.548 -0.304 0.148 0.644 sum 1.822 -1.610 -1.293 2.754 Atomic orbital electron populations 1.24365 0.95859 1.01908 0.96040 1.27995 1.01039 1.08123 1.03170 1.18718 0.92779 0.92615 1.02711 1.21198 0.93366 0.97711 0.97033 1.21219 1.00347 0.92021 1.08981 1.18789 0.90916 0.84725 0.94477 1.86209 1.19231 1.27384 1.87650 1.22898 0.79259 0.97275 1.02225 1.22486 0.98404 0.92031 0.88313 1.87996 1.77056 1.27387 1.37449 1.22481 0.97493 0.83192 0.98730 1.21740 1.02878 1.00269 0.96040 1.19548 0.91365 0.95877 1.08272 1.24776 1.09249 0.94072 0.89549 1.86588 1.84546 1.46403 1.15889 0.85877 0.75715 0.80768 0.81256 1.17614 1.17545 1.17186 1.21146 0.99656 0.91208 0.98646 0.78411 0.66508 0.63636 0.67745 1.26141 1.11363 1.13668 1.04604 1.26200 1.09696 1.04557 1.15264 1.26205 1.09693 1.04561 1.15264 0.87426 0.89039 0.85019 0.85080 0.90948 0.90402 0.91128 0.92085 0.93469 0.93264 0.91543 0.91879 0.91028 0.86679 0.78269 0.85325 0.91031 0.90831 0.91026 0.91067 0.90999 0.90977 0.90968 0.91004 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.02 13.39 28.83 0.39 0.40 16 2 C -0.36 -0.08 4.70 -37.59 -0.18 -0.25 16 3 C -0.07 -0.12 5.84 -105.00 -0.61 -0.73 16 4 C -0.08 -0.07 8.70 -39.22 -0.34 -0.41 16 5 C -0.21 -0.28 9.02 -39.49 -0.36 -0.64 16 6 C 0.16 0.47 6.67 -39.12 -0.26 0.21 16 7 O -0.29 -1.00 9.42 -24.17 -0.23 -1.22 16 8 C 0.06 0.02 5.12 37.16 0.19 0.21 16 9 C 0.06 0.02 6.32 37.16 0.23 0.26 16 10 O -0.38 -1.20 10.31 -40.09 -0.41 -1.61 16 11 C 0.06 0.05 6.66 37.16 0.25 0.30 16 12 C -0.15 -0.09 10.28 37.16 0.38 0.29 16 13 C -0.15 -0.41 5.27 -104.53 -0.55 -0.96 16 14 C -0.07 -0.14 2.37 36.00 0.09 -0.06 16 15 O -0.53 -1.64 12.88 -35.23 -0.45 -2.09 16 16 Si 0.94 1.05 25.48 -169.99 -4.33 -3.28 16 17 H -0.25 -0.17 6.74 56.52 0.38 0.21 16 18 H -0.25 -0.57 7.11 56.52 0.40 -0.17 16 19 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 20 C -0.09 -0.19 8.00 -39.22 -0.31 -0.51 16 21 Si 1.04 -2.08 10.79 -169.99 -1.83 -3.92 16 22 C -0.45 0.75 7.86 101.05 0.79 1.54 16 23 C -0.45 0.62 8.65 101.05 0.87 1.50 16 24 C -0.45 0.58 8.65 101.05 0.87 1.45 16 25 H 0.11 -0.19 7.05 -52.49 -0.37 -0.56 16 26 H 0.09 -0.01 6.03 -52.48 -0.32 -0.32 16 27 H 0.13 -0.16 3.69 -52.48 -0.19 -0.35 16 28 H 0.13 -0.11 6.28 -52.49 -0.33 -0.44 16 29 H 0.07 0.01 7.65 -51.93 -0.40 -0.39 16 30 H 0.08 -0.15 7.65 -51.93 -0.40 -0.55 16 31 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 32 H 0.06 0.00 8.14 -51.93 -0.42 -0.42 16 33 H 0.05 -0.02 8.14 -51.93 -0.42 -0.44 16 34 H 0.05 0.01 8.14 -51.93 -0.42 -0.41 16 35 H 0.07 0.11 8.14 -51.93 -0.42 -0.32 16 36 H 0.06 0.06 8.14 -51.93 -0.42 -0.37 16 37 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 38 H 0.12 0.26 7.82 -51.93 -0.41 -0.14 16 39 H 0.37 -0.09 8.70 45.56 0.40 0.30 16 40 H 0.13 0.14 2.98 -52.49 -0.16 -0.02 16 41 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 42 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 43 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 44 H 0.07 -0.10 6.57 -51.93 -0.34 -0.44 16 45 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 46 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 47 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 48 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 49 H 0.07 -0.09 6.57 -51.92 -0.34 -0.43 16 LS Contribution 391.06 15.07 5.89 5.89 Total: 0.00 -6.16 391.06 -7.43 -13.59 By element: Atomic # 1 Polarization: -2.43 SS G_CDS: -7.52 Total: -9.96 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 1.46 Total: 2.60 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -1.09 Total: -4.93 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: -6.17 Total: -7.20 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -6.16 -7.43 -13.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.258 kcal (2) G-P(sol) polarization free energy of solvation -6.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds