Wall clock time and date at job start Mon Mar 8 2021 10:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32597 * 1 3 3 C 1.47776 * 119.99791 * 2 1 4 4 C 1.39555 * 120.08411 * 180.02562 * 3 2 1 5 5 C 1.37880 * 119.91545 * 179.97438 * 4 3 2 6 6 C 1.38835 * 120.08232 * 359.97438 * 5 4 3 7 7 O 1.35865 * 119.91296 * 180.02562 * 6 5 4 8 8 C 1.42899 * 116.99998 * 0.02562 * 7 6 5 9 9 C 1.53004 * 109.47154 * 180.02562 * 8 7 6 10 10 O 1.42895 * 109.46976 * 64.99725 * 9 8 7 11 11 C 1.42904 * 113.99876 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47084 * 180.02562 * 11 10 9 13 13 C 1.38882 * 120.17727 * 0.04038 * 6 5 4 14 14 C 1.50696 * 119.96218 * 179.97438 * 13 6 5 15 15 O 1.42900 * 109.46984 * 285.00514 * 14 13 6 16 16 Si 1.86295 * 109.47479 * 165.00613 * 14 13 6 17 17 H 1.48498 * 109.46989 * 59.99653 * 16 14 13 18 18 H 1.48494 * 109.47513 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46934 * 300.00279 * 16 14 13 20 20 C 1.37839 * 120.08017 * 359.70819 * 13 6 5 21 21 Si 1.86801 * 119.99996 * 179.97438 * 2 1 3 22 22 C 1.86300 * 109.46957 * 359.97438 * 21 2 1 23 23 C 1.86298 * 109.47026 * 120.00101 * 21 2 1 24 24 C 1.86301 * 109.47053 * 240.00115 * 21 2 1 25 25 H 1.08002 * 120.00233 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.99999 * 359.72499 * 1 2 3 27 27 H 1.08008 * 120.04338 * 359.97438 * 4 3 2 28 28 H 1.07994 * 119.95739 * 180.02562 * 5 4 3 29 29 H 1.09004 * 109.46950 * 300.00120 * 8 7 6 30 30 H 1.08996 * 109.47459 * 60.00039 * 8 7 6 31 31 H 1.09007 * 109.46936 * 185.00015 * 9 8 7 32 32 H 1.08994 * 109.46808 * 304.99737 * 9 8 7 33 33 H 1.08999 * 109.46997 * 300.00358 * 11 10 9 34 34 H 1.08994 * 109.47133 * 59.99870 * 11 10 9 35 35 H 1.08998 * 109.46822 * 299.99699 * 12 11 10 36 36 H 1.09000 * 109.47087 * 60.00065 * 12 11 10 37 37 H 1.09005 * 109.46712 * 179.97438 * 12 11 10 38 38 H 1.09005 * 109.46792 * 45.00121 * 14 13 6 39 39 H 0.96703 * 113.99991 * 300.00157 * 15 14 13 40 40 H 1.07996 * 120.04068 * 180.29552 * 20 13 6 41 41 H 1.09003 * 109.46704 * 60.00197 * 22 21 2 42 42 H 1.09003 * 109.46993 * 180.02562 * 22 21 2 43 43 H 1.08999 * 109.47326 * 299.99568 * 22 21 2 44 44 H 1.08998 * 109.47156 * 60.00082 * 23 21 2 45 45 H 1.08995 * 109.46874 * 180.02562 * 23 21 2 46 46 H 1.08997 * 109.46887 * 299.99740 * 23 21 2 47 47 H 1.09004 * 109.47199 * 59.99984 * 24 21 2 48 48 H 1.08998 * 109.47265 * 180.02562 * 24 21 2 49 49 H 1.09007 * 109.47146 * 300.00054 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0648 1.2798 0.0000 4 6 3.4603 1.2819 -0.0005 5 6 4.1462 2.4780 -0.0011 6 6 3.4502 3.6793 -0.0016 7 8 4.1295 4.8559 -0.0027 8 6 5.5565 4.7812 -0.0037 9 6 6.1413 6.1951 -0.0042 10 8 5.7980 6.8528 1.2171 11 6 6.2990 8.1873 1.3192 12 6 5.8739 8.7904 2.6595 13 6 2.0613 3.6815 -0.0008 14 6 1.3107 4.9882 -0.0008 15 8 1.3768 5.5754 1.3003 16 14 -0.4700 4.6816 -0.4540 17 1 -1.0812 3.7596 0.5368 18 1 -1.2095 5.9693 -0.4546 19 1 -0.5386 4.0712 -1.8061 20 6 1.3686 2.4898 -0.0055 21 14 2.2600 -1.6177 0.0007 22 6 1.0493 -3.0337 0.0021 23 6 3.3310 -1.7171 -1.5203 24 6 3.3310 -1.7157 1.5219 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0045 27 1 4.0025 0.3477 -0.0005 28 1 5.2261 2.4804 -0.0019 29 1 5.8931 4.2494 0.8863 30 1 5.8918 4.2487 -0.8937 31 1 7.2262 6.1395 -0.0946 32 1 5.7348 6.7560 -0.8457 33 1 7.3871 8.1727 1.2565 34 1 5.8963 8.7898 0.5051 35 1 4.7858 8.8050 2.7225 36 1 6.2770 8.1877 3.4733 37 1 6.2565 9.8081 2.7375 38 1 1.7595 5.6649 -0.7280 39 1 0.9949 5.0269 1.9992 40 1 0.2887 2.4922 -0.0096 41 1 0.4223 -2.9765 -0.8877 42 1 1.5943 -3.9777 0.0030 43 1 0.4230 -2.9755 0.8923 44 1 4.0393 -0.8886 -1.5207 45 1 3.8757 -2.6612 -1.5201 46 1 2.7044 -1.6598 -2.4103 47 1 2.7043 -1.6576 2.4119 48 1 3.8764 -2.6595 1.5222 49 1 4.0394 -0.8872 1.5216 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:17:49 Heat of formation + Delta-G solvation = -110.897934 kcal Electronic energy + Delta-G solvation = -25911.421020 eV Core-core repulsion = 22349.182831 eV Total energy + Delta-G solvation = -3562.238188 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.172 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.43237 -39.41093 -38.45716 -37.70596 -34.51506 -33.03870 -32.67407 -30.58904 -29.59270 -29.46504 -28.27983 -28.14055 -26.69849 -25.00055 -23.72039 -23.38385 -22.30437 -20.31467 -19.49947 -18.03359 -17.92592 -17.31039 -17.06210 -16.61953 -16.42074 -16.32788 -15.80413 -15.35026 -15.04632 -14.83376 -14.70083 -14.47563 -14.11636 -13.99781 -13.94756 -13.75937 -13.61857 -13.36808 -13.26545 -13.15964 -13.11548 -12.97858 -12.79680 -12.63948 -12.52137 -12.39718 -12.24955 -12.22762 -11.98680 -11.80770 -11.73038 -11.16365 -10.78585 -10.67803 -10.60981 -10.41132 -10.36438 -10.02960 -8.72346 0.00455 0.19925 1.09381 1.33129 1.36945 1.45517 1.81305 1.82960 1.99115 2.18110 2.21770 2.65454 2.66831 2.85692 3.51023 3.68253 3.78976 3.84200 3.96014 4.05734 4.14271 4.14991 4.21806 4.27243 4.36054 4.39556 4.46871 4.47831 4.57506 4.66753 4.79998 4.82922 4.84081 4.84705 4.86767 4.87173 4.89133 4.91406 4.93238 4.99756 5.07548 5.23168 5.25632 5.32642 5.46857 5.59062 5.66983 5.69444 5.73366 5.94126 6.21249 6.42786 6.69289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.380 4.380 3 C -0.077 4.077 4 C -0.080 4.080 5 C -0.208 4.208 6 C 0.137 3.863 7 O -0.315 6.315 8 C 0.053 3.947 9 C 0.060 3.940 10 O -0.410 6.410 11 C 0.052 3.948 12 C -0.152 4.152 13 C -0.162 4.162 14 C -0.071 4.071 15 O -0.549 6.549 16 Si 0.976 3.024 17 H -0.243 1.243 18 H -0.269 1.269 19 H -0.255 1.255 20 C -0.102 4.102 21 Si 1.098 2.902 22 C -0.459 4.459 23 C -0.461 4.461 24 C -0.462 4.462 25 H 0.124 0.876 26 H 0.087 0.913 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.383 0.617 40 H 0.135 0.865 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.700 -3.020 -1.235 4.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.419 4.419 3 C -0.078 4.078 4 C -0.097 4.097 5 C -0.227 4.227 6 C 0.091 3.909 7 O -0.228 6.228 8 C -0.022 4.022 9 C -0.016 4.016 10 O -0.330 6.330 11 C -0.024 4.024 12 C -0.209 4.209 13 C -0.163 4.163 14 C -0.180 4.180 15 O -0.356 6.356 16 Si 0.799 3.201 17 H -0.167 1.167 18 H -0.194 1.194 19 H -0.179 1.179 20 C -0.120 4.120 21 Si 1.287 2.713 22 C -0.567 4.567 23 C -0.568 4.568 24 C -0.569 4.569 25 H 0.142 0.858 26 H 0.105 0.895 27 H 0.170 0.830 28 H 0.169 0.831 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.231 0.769 40 H 0.152 0.848 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.925 -2.482 -1.641 3.544 hybrid contribution 0.367 0.079 0.217 0.433 sum 2.292 -2.404 -1.424 3.613 Atomic orbital electron populations 1.24583 0.96017 1.02566 0.95568 1.28484 1.01488 1.08588 1.03356 1.19026 0.93404 0.93075 1.02247 1.21480 0.93313 0.98459 0.96456 1.21484 1.01445 0.91571 1.08193 1.19020 0.91233 0.85224 0.95379 1.86178 1.20751 1.27992 1.87910 1.23127 0.78006 0.97709 1.03353 1.22681 0.99874 0.91757 0.87309 1.87958 1.77820 1.28388 1.38840 1.22608 0.98443 0.82527 0.98789 1.21762 1.01894 1.01257 0.95996 1.19676 0.91722 0.96131 1.08792 1.24898 1.10316 0.93819 0.89004 1.86539 1.84970 1.47330 1.16712 0.85369 0.74153 0.79679 0.80873 1.16699 1.19423 1.17852 1.21297 1.00102 0.91384 0.99189 0.77618 0.65302 0.61826 0.66598 1.26239 1.11665 1.14039 1.04770 1.26323 1.09997 1.04930 1.15543 1.26341 1.10001 1.04887 1.15626 0.85759 0.89529 0.83001 0.83095 0.90880 0.88037 0.88611 0.92206 0.91851 0.92979 0.93049 0.92324 0.89302 0.87609 0.76893 0.84762 0.90864 0.90486 0.90902 0.91023 0.90396 0.91311 0.91380 0.90406 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.07 13.39 66.66 0.89 0.96 16 2 C -0.38 -0.07 4.70 23.64 0.11 0.04 16 3 C -0.08 -0.28 5.84 -20.11 -0.12 -0.40 16 4 C -0.08 -0.14 8.70 22.50 0.20 0.06 16 5 C -0.21 -0.59 9.02 22.33 0.20 -0.39 16 6 C 0.14 0.97 6.67 22.57 0.15 1.12 16 7 O -0.31 -2.56 9.42 -87.39 -0.82 -3.38 16 8 C 0.05 0.05 5.12 71.98 0.37 0.42 16 9 C 0.06 0.05 6.32 71.98 0.45 0.51 16 10 O -0.41 -2.94 10.31 -144.34 -1.49 -4.43 16 11 C 0.05 0.12 6.66 71.98 0.48 0.60 16 12 C -0.15 -0.30 10.28 71.98 0.74 0.44 16 13 C -0.16 -1.11 5.27 -19.81 -0.10 -1.22 16 14 C -0.07 -0.43 2.37 71.23 0.17 -0.27 16 15 O -0.55 -4.40 12.88 -148.98 -1.92 -6.32 16 16 Si 0.98 3.16 25.48 68.60 1.75 4.91 16 17 H -0.24 -0.37 6.74 99.48 0.67 0.30 16 18 H -0.27 -1.58 7.11 99.48 0.71 -0.87 16 19 H -0.25 -1.02 7.11 99.48 0.71 -0.31 16 20 C -0.10 -0.53 8.00 22.50 0.18 -0.35 16 21 Si 1.10 -5.31 10.79 68.60 0.74 -4.57 16 22 C -0.46 2.00 7.86 113.37 0.89 2.89 16 23 C -0.46 1.70 8.65 113.37 0.98 2.68 16 24 C -0.46 1.56 8.65 113.37 0.98 2.54 16 25 H 0.12 -0.54 7.05 -2.91 -0.02 -0.56 16 26 H 0.09 0.01 6.03 -2.91 -0.02 -0.01 16 27 H 0.15 -0.49 3.69 -2.91 -0.01 -0.50 16 28 H 0.15 -0.34 6.28 -2.91 -0.02 -0.36 16 29 H 0.07 0.03 7.65 -2.38 -0.02 0.01 16 30 H 0.10 -0.45 7.65 -2.39 -0.02 -0.47 16 31 H 0.10 -0.45 8.14 -2.38 -0.02 -0.47 16 32 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 34 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.09 -0.17 8.14 -2.38 -0.02 -0.19 16 38 H 0.11 0.75 7.82 -2.38 -0.02 0.73 16 39 H 0.38 0.44 8.70 -74.06 -0.64 -0.20 16 40 H 0.14 0.39 2.98 -2.91 -0.01 0.38 16 41 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 42 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 43 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 44 H 0.07 -0.27 6.57 -2.39 -0.02 -0.28 16 45 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 46 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 47 H 0.07 -0.16 7.96 -2.38 -0.02 -0.18 16 48 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 49 H 0.07 -0.23 6.57 -2.38 -0.02 -0.24 16 Total: 0.00 -14.94 391.06 5.84 -9.10 By element: Atomic # 1 Polarization: -5.95 SS G_CDS: 1.01 Total: -4.94 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 6.57 Total: 9.63 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -4.23 Total: -14.13 kcal Atomic # 14 Polarization: -2.14 SS G_CDS: 2.49 Total: 0.34 kcal Total: -14.94 5.84 -9.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.802 kcal (2) G-P(sol) polarization free energy of solvation -14.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds