Wall clock time and date at job start Mon Mar 8 2021 10:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32563 * 1 3 3 C 1.47808 * 120.00396 * 2 1 4 4 C 1.39511 * 120.14251 * 312.83658 * 3 2 1 5 5 C 1.37991 * 119.86061 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.93476 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.46914 * 299.99989 * 6 5 4 8 8 Si 1.86305 * 109.47330 * 180.02562 * 6 5 4 9 9 H 1.48497 * 109.46824 * 179.97438 * 8 6 5 10 10 H 1.48494 * 109.47039 * 300.00062 * 8 6 5 11 11 H 1.48501 * 109.46857 * 59.99825 * 8 6 5 12 12 C 1.38328 * 120.14064 * 0.27673 * 5 4 3 13 13 C 1.38378 * 120.28259 * 359.44886 * 12 5 4 14 14 C 1.50700 * 119.92897 * 180.27368 * 13 12 5 15 15 F 1.39891 * 109.47259 * 270.27567 * 14 13 12 16 16 F 1.39901 * 109.46825 * 30.27455 * 14 13 12 17 17 F 1.39901 * 109.46975 * 150.27260 * 14 13 12 18 18 C 1.37946 * 120.13922 * 0.55110 * 13 12 5 19 19 Si 1.86805 * 119.99675 * 180.02562 * 2 1 3 20 20 C 1.86300 * 109.46892 * 174.67938 * 19 2 1 21 21 C 1.86295 * 109.47207 * 294.67853 * 19 2 1 22 22 C 1.86304 * 109.47106 * 54.68212 * 19 2 1 23 23 H 1.08003 * 120.00197 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.99862 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.07349 * 0.02562 * 4 3 2 26 26 H 1.08993 * 109.46889 * 59.99890 * 6 5 4 27 27 H 0.96696 * 114.00187 * 300.00102 * 7 6 5 28 28 H 1.07993 * 119.85998 * 179.70467 * 12 5 4 29 29 H 1.08006 * 120.07336 * 179.75022 * 18 13 12 30 30 H 1.08997 * 109.47352 * 68.28151 * 20 19 2 31 31 H 1.09004 * 109.46946 * 188.28313 * 20 19 2 32 32 H 1.08993 * 109.47189 * 308.27816 * 20 19 2 33 33 H 1.09004 * 109.46978 * 60.00053 * 21 19 2 34 34 H 1.09004 * 109.47235 * 179.97438 * 21 19 2 35 35 H 1.08998 * 109.47153 * 300.00064 * 21 19 2 36 36 H 1.08993 * 109.47155 * 59.99678 * 22 19 2 37 37 H 1.09001 * 109.46943 * 180.02562 * 22 19 2 38 38 H 1.09004 * 109.46953 * 299.99868 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0648 1.2800 0.0000 4 6 1.7047 2.2969 -0.8847 5 6 2.3984 3.4897 -0.8793 6 6 2.0105 4.5895 -1.8339 7 8 2.1384 4.1208 -3.1778 8 14 3.1304 6.0565 -1.5793 9 1 2.7485 7.1398 -2.5204 10 1 2.9982 6.5437 -0.1828 11 1 4.5375 5.6548 -1.8323 12 6 3.4525 3.6763 -0.0032 13 6 3.8110 2.6738 0.8807 14 6 4.9567 2.8880 1.8359 15 9 6.1491 2.4710 1.2350 16 9 5.0472 4.2463 2.1585 17 9 4.7372 2.1456 3.0012 18 6 3.1255 1.4767 0.8853 19 14 2.2596 -1.6178 -0.0007 20 6 4.0846 -1.2812 -0.1634 21 6 1.9349 -2.5230 1.5948 22 6 1.6906 -2.6627 -1.4344 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 0.8843 2.1511 -1.5718 26 1 0.9776 4.8839 -1.6485 27 1 3.0335 3.8411 -3.4133 28 1 3.9953 4.6099 -0.0062 29 1 3.4089 0.6935 1.5729 30 1 4.4473 -0.7981 0.7438 31 1 4.6158 -2.2214 -0.3116 32 1 4.2587 -0.6271 -1.0178 33 1 0.8671 -2.7200 1.6900 34 1 2.4795 -3.4673 1.5942 35 1 2.2678 -1.9117 2.4336 36 1 1.8805 -2.1331 -2.3679 37 1 2.2352 -3.6069 -1.4345 38 1 0.6227 -2.8596 -1.3392 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:21:25 Heat of formation + Delta-G solvation = -177.231839 kcal Electronic energy + Delta-G solvation = -23475.312107 eV Core-core repulsion = 19605.812779 eV Total energy + Delta-G solvation = -3869.499328 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.097 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.30117 -48.82383 -48.76473 -40.93651 -37.82883 -35.30135 -33.28970 -31.06430 -29.45780 -28.29771 -28.26374 -27.22457 -26.90821 -24.23879 -22.54627 -20.60704 -19.63132 -19.49306 -19.10890 -17.78593 -17.53623 -16.58254 -16.47825 -16.23646 -15.66105 -15.51058 -15.40487 -15.21522 -15.03356 -14.92502 -14.79688 -14.65668 -14.08078 -13.93268 -13.79165 -13.72013 -13.69649 -13.25749 -13.20359 -13.16167 -13.07870 -12.90560 -12.62880 -12.32341 -12.13387 -11.79968 -11.42495 -10.94963 -10.79064 -10.60588 -10.40613 -10.14061 -9.48462 -0.25103 -0.09325 1.08978 1.11902 1.37131 1.44028 1.52118 1.78881 1.85108 1.97364 2.15565 2.43523 2.57620 2.68417 2.86235 3.27101 3.41220 3.56616 3.62306 3.88448 4.08845 4.11014 4.44110 4.50519 4.66454 4.80058 4.81181 4.83037 4.85927 4.88044 4.89118 4.90891 4.94233 5.09007 5.21439 5.37784 5.57223 5.61269 5.67219 5.67878 5.81380 6.63728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.394 4.394 3 C -0.030 4.030 4 C -0.060 4.060 5 C -0.114 4.114 6 C -0.068 4.068 7 O -0.546 6.546 8 Si 0.957 3.043 9 H -0.265 1.265 10 H -0.258 1.258 11 H -0.254 1.254 12 C -0.099 4.099 13 C -0.181 4.181 14 C 0.505 3.495 15 F -0.179 7.179 16 F -0.182 7.182 17 F -0.177 7.177 18 C -0.073 4.073 19 Si 1.106 2.894 20 C -0.466 4.466 21 C -0.461 4.461 22 C -0.458 4.458 23 H 0.125 0.875 24 H 0.096 0.904 25 H 0.149 0.851 26 H 0.136 0.864 27 H 0.390 0.610 28 H 0.131 0.869 29 H 0.150 0.850 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 -2.655 -1.517 4.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.434 4.434 3 C -0.030 4.030 4 C -0.078 4.078 5 C -0.115 4.115 6 C -0.179 4.179 7 O -0.353 6.353 8 Si 0.782 3.218 9 H -0.189 1.189 10 H -0.183 1.183 11 H -0.178 1.178 12 C -0.117 4.117 13 C -0.182 4.182 14 C 0.451 3.549 15 F -0.160 7.160 16 F -0.163 7.163 17 F -0.158 7.158 18 C -0.091 4.091 19 Si 1.293 2.707 20 C -0.573 4.573 21 C -0.568 4.568 22 C -0.565 4.565 23 H 0.143 0.857 24 H 0.114 0.886 25 H 0.166 0.834 26 H 0.153 0.847 27 H 0.239 0.761 28 H 0.149 0.851 29 H 0.167 0.833 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.983 -1.719 -1.377 3.708 hybrid contribution 0.758 -0.059 0.353 0.838 sum -2.226 -1.778 -1.024 3.027 Atomic orbital electron populations 1.24533 0.95191 1.03141 0.92097 1.28174 1.01512 1.07413 1.06258 1.19142 0.94681 0.94594 0.94537 1.21586 0.98365 0.90960 0.96917 1.20302 0.95816 0.97442 0.97893 1.24857 1.09863 1.00549 0.82627 1.86501 1.36481 1.86244 1.26050 0.85567 0.78665 0.77348 0.80254 1.18949 1.18265 1.17789 1.20915 0.97396 0.98270 0.95120 1.19777 0.98874 0.98697 1.00886 1.18443 0.82735 0.73741 0.79941 1.93229 1.49445 1.90032 1.83339 1.93189 1.96591 1.33210 1.93348 1.93197 1.94688 1.76876 1.51035 1.21269 0.94020 0.95457 0.98308 0.77481 0.64334 0.62161 0.66680 1.26443 1.21342 1.05126 1.04352 1.26270 1.05447 1.08472 1.16579 1.26225 1.06479 1.09606 1.14173 0.85654 0.88560 0.83378 0.84651 0.76063 0.85138 0.83266 0.91564 0.90731 0.91618 0.90686 0.90820 0.91352 0.91292 0.90861 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.64 13.32 66.67 0.89 1.53 16 2 C -0.39 1.61 4.41 23.65 0.10 1.71 16 3 C -0.03 0.03 5.22 -20.12 -0.11 -0.08 16 4 C -0.06 0.08 8.90 22.52 0.20 0.28 16 5 C -0.11 0.07 5.38 -19.90 -0.11 -0.04 16 6 C -0.07 0.19 2.82 71.24 0.20 0.39 16 7 O -0.55 1.10 12.76 -148.98 -1.90 -0.80 16 8 Si 0.96 -0.80 25.06 68.60 1.72 0.91 16 9 H -0.26 -0.51 7.11 99.48 0.71 0.20 16 10 H -0.26 -0.28 7.11 99.48 0.71 0.43 16 11 H -0.25 0.00 7.11 99.48 0.71 0.71 16 12 C -0.10 -0.18 8.02 22.32 0.18 0.00 16 13 C -0.18 -0.55 5.45 -19.90 -0.11 -0.66 16 14 C 0.51 2.51 3.36 71.24 0.24 2.75 16 15 F -0.18 -1.11 17.30 44.97 0.78 -0.33 16 16 F -0.18 -1.15 16.46 44.97 0.74 -0.41 16 17 F -0.18 -0.92 16.46 44.97 0.74 -0.18 16 18 C -0.07 -0.05 7.57 22.52 0.17 0.12 16 19 Si 1.11 -7.02 11.58 68.60 0.79 -6.23 16 20 C -0.47 1.38 7.82 113.37 0.89 2.26 16 21 C -0.46 2.23 8.65 113.37 0.98 3.21 16 22 C -0.46 2.35 8.65 113.37 0.98 3.33 16 23 H 0.13 -1.18 7.73 -2.91 -0.02 -1.20 16 24 H 0.10 -0.54 7.86 -2.91 -0.02 -0.56 16 25 H 0.15 -0.52 7.96 -2.91 -0.02 -0.54 16 26 H 0.14 -0.72 7.96 -2.39 -0.02 -0.74 16 27 H 0.39 -3.05 8.70 -74.06 -0.64 -3.70 16 28 H 0.13 0.15 4.40 -2.91 -0.01 0.14 16 29 H 0.15 -0.26 5.79 -2.91 -0.02 -0.28 16 30 H 0.07 -0.15 6.46 -2.39 -0.02 -0.17 16 31 H 0.07 -0.25 7.96 -2.38 -0.02 -0.27 16 32 H 0.06 -0.11 7.96 -2.39 -0.02 -0.13 16 33 H 0.07 -0.41 7.96 -2.38 -0.02 -0.43 16 34 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 35 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 36 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 37 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 38 H 0.07 -0.46 7.96 -2.38 -0.02 -0.48 16 Total: 0.00 -9.18 331.08 8.57 -0.60 By element: Atomic # 1 Polarization: -9.57 SS G_CDS: 1.19 Total: -8.38 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 4.51 Total: 14.80 kcal Atomic # 8 Polarization: 1.10 SS G_CDS: -1.90 Total: -0.80 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 2.26 Total: -0.92 kcal Atomic # 14 Polarization: -7.83 SS G_CDS: 2.51 Total: -5.31 kcal Total: -9.18 8.57 -0.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.629 kcal (2) G-P(sol) polarization free energy of solvation -9.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -0.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds