Wall clock time and date at job start Mon Mar 8 2021 10:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32564 * 1 3 3 C 1.47816 * 119.99510 * 2 1 4 4 C 1.39519 * 120.13993 * 245.69661 * 3 2 1 5 5 C 1.37993 * 119.85559 * 179.97438 * 4 3 2 6 6 C 1.38321 * 120.14234 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.85549 * 179.97438 * 6 5 4 8 8 F 1.39897 * 109.47446 * 0.02562 * 7 6 5 9 9 F 1.39905 * 109.46935 * 119.99993 * 7 6 5 10 10 F 1.39898 * 109.47379 * 239.99978 * 7 6 5 11 11 C 1.38365 * 120.28768 * 359.77102 * 6 5 4 12 12 C 1.37956 * 120.14045 * 0.50016 * 11 6 5 13 13 C 1.50693 * 120.07367 * 179.74799 * 12 11 6 14 14 O 1.42898 * 109.47160 * 255.47924 * 13 12 11 15 15 Si 1.86303 * 109.47239 * 15.47834 * 13 12 11 16 16 H 1.48503 * 109.46944 * 59.99674 * 15 13 12 17 17 H 1.48505 * 109.46979 * 300.00198 * 15 13 12 18 18 H 1.48493 * 109.47352 * 179.97438 * 15 13 12 19 19 Si 1.86798 * 120.00549 * 179.97438 * 2 1 3 20 20 C 1.86297 * 109.47123 * 185.18729 * 19 2 1 21 21 C 1.86299 * 109.47169 * 305.18835 * 19 2 1 22 22 C 1.86302 * 109.46827 * 65.18668 * 19 2 1 23 23 H 1.07999 * 119.99587 * 175.05340 * 1 2 3 24 24 H 1.07998 * 120.00707 * 355.04979 * 1 2 3 25 25 H 1.08001 * 120.07133 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.93012 * 179.97438 * 5 4 3 27 27 H 1.08000 * 119.93151 * 180.27779 * 11 6 5 28 28 H 1.09000 * 109.47383 * 135.48218 * 13 12 11 29 29 H 0.96695 * 114.00436 * 304.99679 * 14 13 12 30 30 H 1.08999 * 109.47301 * 64.97297 * 20 19 2 31 31 H 1.09002 * 109.47029 * 184.97217 * 20 19 2 32 32 H 1.09000 * 109.47307 * 304.97202 * 20 19 2 33 33 H 1.09005 * 109.47092 * 59.99671 * 21 19 2 34 34 H 1.08989 * 109.47227 * 179.97438 * 21 19 2 35 35 H 1.08998 * 109.47045 * 299.99958 * 21 19 2 36 36 H 1.09004 * 109.46766 * 60.00063 * 22 19 2 37 37 H 1.09003 * 109.47166 * 179.97438 * 22 19 2 38 38 H 1.08996 * 109.47038 * 300.00348 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0646 1.2802 0.0000 4 6 2.8449 1.6387 -1.0996 5 6 3.5319 2.8354 -1.0936 6 6 3.4477 3.6791 -0.0008 7 6 4.2011 4.9843 -0.0008 8 9 4.9049 5.1165 -1.2026 9 9 3.2974 6.0444 0.1289 10 9 5.1000 5.0039 1.0710 11 6 2.6714 3.3319 1.0907 12 6 1.9842 2.1358 1.0996 13 6 1.1437 1.7566 2.2915 14 8 1.8238 0.7590 3.0559 15 14 0.8545 3.2612 3.3514 16 1 0.1478 4.2979 2.5570 17 1 2.1591 3.7975 3.8161 18 1 0.0258 2.8876 4.5256 19 14 2.2598 -1.6176 0.0007 20 6 4.0851 -1.2806 0.1594 21 6 1.6938 -2.6609 1.4367 22 6 1.9319 -2.5247 -1.5932 23 1 -0.5399 -0.9319 -0.0807 24 1 -0.5401 0.9317 0.0807 25 1 2.9111 0.9809 -1.9537 26 1 4.1366 3.1139 -1.9440 27 1 2.6063 3.9971 1.9391 28 1 0.1862 1.3629 1.9505 29 1 2.0755 -0.0233 2.5464 30 1 4.2882 -0.8294 1.1306 31 1 4.6365 -2.2167 0.0712 32 1 4.3987 -0.5984 -0.6308 33 1 0.6258 -2.8581 1.3438 34 1 2.2385 -3.6050 1.4368 35 1 1.8856 -2.1302 2.3692 36 1 2.2631 -1.9142 -2.4333 37 1 2.4774 -3.4684 -1.5930 38 1 0.8640 -2.7218 -1.6860 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:23:37 Heat of formation + Delta-G solvation = -188.684173 kcal Electronic energy + Delta-G solvation = -23703.404026 eV Core-core repulsion = 19833.408087 eV Total energy + Delta-G solvation = -3869.995939 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.097 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.08688 -48.61105 -48.53768 -41.09051 -37.73675 -35.41996 -32.90662 -31.72077 -29.67200 -28.57764 -28.55745 -27.11867 -26.88915 -23.75761 -22.75885 -20.88185 -19.43943 -19.40668 -19.34517 -18.21268 -17.32516 -16.79167 -16.20545 -15.78692 -15.68909 -15.44357 -15.16715 -15.10077 -14.98057 -14.69844 -14.69624 -14.55294 -14.33962 -14.28767 -14.04583 -13.95341 -13.66213 -13.46925 -13.44995 -13.33971 -13.21374 -13.09655 -12.64741 -12.26262 -11.85538 -11.74737 -11.41787 -11.24001 -11.02511 -10.97823 -10.48301 -10.16881 -9.77943 -0.34441 0.03575 0.72442 1.12004 1.45405 1.48631 1.49876 1.67694 1.69939 1.86936 1.92622 2.26052 2.43889 2.73427 3.01711 3.41481 3.45943 3.56250 3.65821 3.74955 4.02520 4.10705 4.32222 4.38770 4.52064 4.57601 4.59994 4.61395 4.62177 4.65734 4.67348 4.68749 4.83873 4.99189 5.16954 5.18671 5.33129 5.38812 5.40028 5.47319 5.60465 6.42634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.394 4.394 3 C 0.017 3.983 4 C -0.115 4.115 5 C -0.061 4.061 6 C -0.185 4.185 7 C 0.508 3.492 8 F -0.176 7.176 9 F -0.176 7.176 10 F -0.175 7.175 11 C -0.067 4.067 12 C -0.118 4.118 13 C -0.091 4.091 14 O -0.530 6.530 15 Si 0.998 3.002 16 H -0.244 1.244 17 H -0.247 1.247 18 H -0.249 1.249 19 Si 1.047 2.953 20 C -0.450 4.450 21 C -0.450 4.450 22 C -0.447 4.447 23 H 0.111 0.889 24 H 0.098 0.902 25 H 0.140 0.860 26 H 0.143 0.857 27 H 0.134 0.866 28 H 0.082 0.918 29 H 0.363 0.637 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.264 -4.191 -1.890 5.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.435 4.435 3 C 0.016 3.984 4 C -0.133 4.133 5 C -0.079 4.079 6 C -0.186 4.186 7 C 0.454 3.546 8 F -0.157 7.157 9 F -0.157 7.157 10 F -0.156 7.156 11 C -0.085 4.085 12 C -0.118 4.118 13 C -0.200 4.200 14 O -0.336 6.336 15 Si 0.817 3.183 16 H -0.168 1.168 17 H -0.171 1.171 18 H -0.173 1.173 19 Si 1.238 2.762 20 C -0.558 4.558 21 C -0.558 4.558 22 C -0.555 4.555 23 H 0.129 0.871 24 H 0.117 0.883 25 H 0.158 0.842 26 H 0.160 0.840 27 H 0.152 0.848 28 H 0.100 0.900 29 H 0.211 0.789 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.519 -2.931 -0.909 3.970 hybrid contribution 0.302 -0.413 -0.920 1.052 sum -2.216 -3.344 -1.828 4.408 Atomic orbital electron populations 1.24322 0.95216 1.02415 0.92654 1.28087 1.01290 1.07862 1.06212 1.19042 0.94148 0.92867 0.92303 1.21219 0.97015 0.96646 0.98442 1.21012 0.97110 0.93072 0.96742 1.19909 1.04398 0.95486 0.98834 1.18286 0.77593 0.84996 0.73772 1.93176 1.79959 1.96363 1.46195 1.93233 1.67267 1.59675 1.95570 1.93239 1.69215 1.96829 1.56326 1.20771 0.94274 0.96459 0.96960 1.20282 1.00306 0.94432 0.96797 1.25391 0.96253 1.02042 0.96268 1.86762 1.78712 1.30321 1.37845 0.84673 0.81198 0.73728 0.78747 1.16753 1.17119 1.17276 0.78430 0.66384 0.63119 0.68232 1.26142 1.19338 1.05234 1.05055 1.26166 1.06250 1.09693 1.13700 1.26105 1.05129 1.08290 1.15952 0.87099 0.88331 0.84195 0.83961 0.84836 0.90000 0.78886 0.90967 0.90847 0.90982 0.90951 0.90558 0.90840 0.91035 0.90821 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.35 12.08 28.82 0.35 0.70 16 2 C -0.39 1.08 2.88 -37.57 -0.11 0.98 16 3 C 0.02 -0.01 4.78 -105.01 -0.50 -0.52 16 4 C -0.12 0.14 8.83 -39.19 -0.35 -0.21 16 5 C -0.06 0.01 9.41 -39.64 -0.37 -0.36 16 6 C -0.18 -0.26 5.38 -104.54 -0.56 -0.82 16 7 C 0.51 1.15 3.31 36.01 0.12 1.27 16 8 F -0.18 -0.39 15.96 2.25 0.04 -0.35 16 9 F -0.18 -0.52 17.23 2.25 0.04 -0.48 16 10 F -0.17 -0.56 17.24 2.25 0.04 -0.52 16 11 C -0.07 -0.09 8.20 -39.64 -0.32 -0.42 16 12 C -0.12 -0.05 5.24 -104.24 -0.55 -0.59 16 13 C -0.09 0.01 2.17 36.00 0.08 0.09 16 14 O -0.53 -0.31 12.68 -35.23 -0.45 -0.76 16 15 Si 1.00 0.58 25.77 -169.99 -4.38 -3.80 16 16 H -0.24 -0.08 7.11 56.52 0.40 0.32 16 17 H -0.25 -0.36 6.72 56.52 0.38 0.02 16 18 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 19 Si 1.05 -4.28 11.03 -169.99 -1.87 -6.15 16 20 C -0.45 1.13 8.55 101.05 0.86 1.99 16 21 C -0.45 1.52 8.65 101.05 0.87 2.39 16 22 C -0.45 1.42 8.65 101.05 0.87 2.29 16 23 H 0.11 -0.54 7.73 -52.49 -0.41 -0.95 16 24 H 0.10 -0.30 7.46 -52.49 -0.39 -0.69 16 25 H 0.14 -0.47 8.06 -52.49 -0.42 -0.90 16 26 H 0.14 -0.23 7.14 -52.49 -0.37 -0.61 16 27 H 0.13 0.14 4.89 -52.49 -0.26 -0.12 16 28 H 0.08 -0.15 5.61 -51.93 -0.29 -0.44 16 29 H 0.36 -0.69 5.96 45.56 0.27 -0.42 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 32 H 0.07 -0.16 7.36 -51.93 -0.38 -0.55 16 33 H 0.07 -0.25 7.96 -51.93 -0.41 -0.67 16 34 H 0.08 -0.24 7.96 -51.94 -0.41 -0.65 16 35 H 0.07 -0.24 6.96 -51.93 -0.36 -0.61 16 36 H 0.07 -0.22 7.96 -51.93 -0.41 -0.63 16 37 H 0.07 -0.22 7.96 -51.93 -0.41 -0.63 16 38 H 0.07 -0.23 7.96 -51.93 -0.41 -0.64 16 LS Contribution 325.89 15.07 4.91 4.91 Total: 0.00 -3.99 325.89 -5.61 -9.60 By element: Atomic # 1 Polarization: -4.91 SS G_CDS: -4.33 Total: -9.24 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 0.40 Total: 6.79 kcal Atomic # 8 Polarization: -0.31 SS G_CDS: -0.45 Total: -0.76 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.11 Total: -1.35 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: -6.26 Total: -9.96 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -3.99 -5.61 -9.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.088 kcal (2) G-P(sol) polarization free energy of solvation -3.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds