Wall clock time and date at job start Mon Mar 8 2021 10:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32564 * 1 3 3 C 1.47816 * 119.99510 * 2 1 4 4 C 1.39519 * 120.13993 * 245.69661 * 3 2 1 5 5 C 1.37993 * 119.85559 * 179.97438 * 4 3 2 6 6 C 1.38321 * 120.14234 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.85549 * 179.97438 * 6 5 4 8 8 F 1.39897 * 109.47446 * 0.02562 * 7 6 5 9 9 F 1.39905 * 109.46935 * 119.99993 * 7 6 5 10 10 F 1.39898 * 109.47379 * 239.99978 * 7 6 5 11 11 C 1.38365 * 120.28768 * 359.77102 * 6 5 4 12 12 C 1.37956 * 120.14045 * 0.50016 * 11 6 5 13 13 C 1.50693 * 120.07367 * 179.74799 * 12 11 6 14 14 O 1.42898 * 109.47160 * 255.47924 * 13 12 11 15 15 Si 1.86303 * 109.47239 * 15.47834 * 13 12 11 16 16 H 1.48503 * 109.46944 * 59.99674 * 15 13 12 17 17 H 1.48505 * 109.46979 * 300.00198 * 15 13 12 18 18 H 1.48493 * 109.47352 * 179.97438 * 15 13 12 19 19 Si 1.86798 * 120.00549 * 179.97438 * 2 1 3 20 20 C 1.86297 * 109.47123 * 185.18729 * 19 2 1 21 21 C 1.86299 * 109.47169 * 305.18835 * 19 2 1 22 22 C 1.86302 * 109.46827 * 65.18668 * 19 2 1 23 23 H 1.07999 * 119.99587 * 175.05340 * 1 2 3 24 24 H 1.07998 * 120.00707 * 355.04979 * 1 2 3 25 25 H 1.08001 * 120.07133 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.93012 * 179.97438 * 5 4 3 27 27 H 1.08000 * 119.93151 * 180.27779 * 11 6 5 28 28 H 1.09000 * 109.47383 * 135.48218 * 13 12 11 29 29 H 0.96695 * 114.00436 * 304.99679 * 14 13 12 30 30 H 1.08999 * 109.47301 * 64.97297 * 20 19 2 31 31 H 1.09002 * 109.47029 * 184.97217 * 20 19 2 32 32 H 1.09000 * 109.47307 * 304.97202 * 20 19 2 33 33 H 1.09005 * 109.47092 * 59.99671 * 21 19 2 34 34 H 1.08989 * 109.47227 * 179.97438 * 21 19 2 35 35 H 1.08998 * 109.47045 * 299.99958 * 21 19 2 36 36 H 1.09004 * 109.46766 * 60.00063 * 22 19 2 37 37 H 1.09003 * 109.47166 * 179.97438 * 22 19 2 38 38 H 1.08996 * 109.47038 * 300.00348 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3256 0.0000 0.0000 3 6 2.0646 1.2802 0.0000 4 6 2.8449 1.6387 -1.0996 5 6 3.5319 2.8354 -1.0936 6 6 3.4477 3.6791 -0.0008 7 6 4.2011 4.9843 -0.0008 8 9 4.9049 5.1165 -1.2026 9 9 3.2974 6.0444 0.1289 10 9 5.1000 5.0039 1.0710 11 6 2.6714 3.3319 1.0907 12 6 1.9842 2.1358 1.0996 13 6 1.1437 1.7566 2.2915 14 8 1.8238 0.7590 3.0559 15 14 0.8545 3.2612 3.3514 16 1 0.1478 4.2979 2.5570 17 1 2.1591 3.7975 3.8161 18 1 0.0258 2.8876 4.5256 19 14 2.2598 -1.6176 0.0007 20 6 4.0851 -1.2806 0.1594 21 6 1.6938 -2.6609 1.4367 22 6 1.9319 -2.5247 -1.5932 23 1 -0.5399 -0.9319 -0.0807 24 1 -0.5401 0.9317 0.0807 25 1 2.9111 0.9809 -1.9537 26 1 4.1366 3.1139 -1.9440 27 1 2.6063 3.9971 1.9391 28 1 0.1862 1.3629 1.9505 29 1 2.0755 -0.0233 2.5464 30 1 4.2882 -0.8294 1.1306 31 1 4.6365 -2.2167 0.0712 32 1 4.3987 -0.5984 -0.6308 33 1 0.6258 -2.8581 1.3438 34 1 2.2385 -3.6050 1.4368 35 1 1.8856 -2.1302 2.3692 36 1 2.2631 -1.9142 -2.4333 37 1 2.4774 -3.4684 -1.5930 38 1 0.8640 -2.7218 -1.6860 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:23:37 Heat of formation + Delta-G solvation = -178.485513 kcal Electronic energy + Delta-G solvation = -23702.961779 eV Core-core repulsion = 19833.408087 eV Total energy + Delta-G solvation = -3869.553692 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.097 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.28627 -48.80434 -48.76068 -41.04061 -37.72982 -35.28286 -32.87233 -31.61628 -29.38975 -28.32416 -28.26224 -27.07082 -26.93933 -23.73711 -22.73976 -20.72679 -19.61485 -19.53826 -19.48833 -18.21683 -17.20441 -16.78527 -16.19203 -15.78388 -15.70783 -15.60804 -15.25111 -15.19597 -15.07659 -14.91782 -14.83216 -14.49790 -14.22800 -14.02591 -13.80436 -13.69009 -13.59494 -13.37356 -13.15478 -13.11223 -12.96383 -12.93896 -12.63185 -12.34083 -11.96427 -11.61890 -11.33351 -11.02928 -10.88386 -10.75702 -10.24651 -10.13789 -9.66844 -0.30591 0.06346 0.96923 1.10523 1.39007 1.41376 1.54720 1.77240 1.85548 1.99489 2.17574 2.36387 2.60769 2.68355 2.89089 3.28717 3.45974 3.61818 3.75299 3.80412 4.09027 4.16492 4.40779 4.48412 4.71327 4.81458 4.85685 4.86715 4.90350 4.91701 4.92326 4.93089 4.98056 5.03728 5.24202 5.37339 5.57379 5.61816 5.71112 5.71935 5.77112 6.56390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.408 4.408 3 C 0.021 3.979 4 C -0.116 4.116 5 C -0.064 4.064 6 C -0.200 4.200 7 C 0.506 3.494 8 F -0.176 7.176 9 F -0.183 7.183 10 F -0.184 7.184 11 C -0.084 4.084 12 C -0.127 4.127 13 C -0.087 4.087 14 O -0.544 6.544 15 Si 1.004 2.996 16 H -0.242 1.242 17 H -0.268 1.268 18 H -0.260 1.260 19 Si 1.115 2.885 20 C -0.469 4.469 21 C -0.464 4.464 22 C -0.460 4.460 23 H 0.132 0.868 24 H 0.096 0.904 25 H 0.165 0.835 26 H 0.155 0.845 27 H 0.128 0.872 28 H 0.103 0.897 29 H 0.374 0.626 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.067 -5.556 -2.813 6.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.447 4.447 3 C 0.021 3.979 4 C -0.133 4.133 5 C -0.082 4.082 6 C -0.201 4.201 7 C 0.452 3.548 8 F -0.157 7.157 9 F -0.164 7.164 10 F -0.165 7.165 11 C -0.102 4.102 12 C -0.127 4.127 13 C -0.196 4.196 14 O -0.351 6.351 15 Si 0.826 3.174 16 H -0.165 1.165 17 H -0.193 1.193 18 H -0.184 1.184 19 Si 1.302 2.698 20 C -0.576 4.576 21 C -0.571 4.571 22 C -0.567 4.567 23 H 0.150 0.850 24 H 0.114 0.886 25 H 0.183 0.817 26 H 0.172 0.828 27 H 0.145 0.855 28 H 0.120 0.880 29 H 0.224 0.776 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.316 -4.284 -1.833 5.720 hybrid contribution 0.565 0.015 -0.623 0.841 sum -2.751 -4.270 -2.456 5.642 Atomic orbital electron populations 1.24561 0.95060 1.03381 0.91250 1.28305 1.01651 1.07358 1.07387 1.19284 0.93752 0.93186 0.91691 1.21551 0.96237 0.96458 0.99096 1.21233 0.97218 0.93188 0.96546 1.19915 1.05111 0.95377 0.99715 1.18460 0.77462 0.85400 0.73465 1.93166 1.80000 1.96408 1.46122 1.93212 1.67465 1.60172 1.95601 1.93214 1.69580 1.96892 1.56823 1.20853 0.95124 0.97181 0.97034 1.20366 1.00489 0.94392 0.97473 1.25276 0.97079 1.01508 0.95703 1.86732 1.78921 1.30944 1.38544 0.84578 0.79863 0.74443 0.78491 1.16519 1.19267 1.18381 0.77371 0.63961 0.61516 0.66947 1.26402 1.21517 1.05129 1.04523 1.26317 1.06717 1.09873 1.14198 1.26251 1.05433 1.08415 1.16595 0.85028 0.88570 0.81735 0.82752 0.85482 0.87965 0.77627 0.91765 0.90908 0.91182 0.90382 0.90748 0.90893 0.90970 0.91026 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.90 12.08 66.67 0.81 1.70 16 2 C -0.41 2.85 2.88 23.66 0.07 2.92 16 3 C 0.02 -0.05 4.78 -20.12 -0.10 -0.15 16 4 C -0.12 0.38 8.83 22.52 0.20 0.58 16 5 C -0.06 0.03 9.41 22.23 0.21 0.24 16 6 C -0.20 -0.74 5.38 -19.81 -0.11 -0.85 16 7 C 0.51 2.98 3.31 71.24 0.24 3.21 16 8 F -0.18 -0.92 15.96 44.97 0.72 -0.20 16 9 F -0.18 -1.37 17.23 44.97 0.77 -0.59 16 10 F -0.18 -1.49 17.24 44.97 0.78 -0.71 16 11 C -0.08 -0.34 8.20 22.23 0.18 -0.15 16 12 C -0.13 -0.12 5.24 -19.62 -0.10 -0.23 16 13 C -0.09 0.01 2.17 71.23 0.15 0.17 16 14 O -0.54 -0.61 12.68 -148.98 -1.89 -2.50 16 15 Si 1.00 2.36 25.77 68.60 1.77 4.13 16 16 H -0.24 -0.41 7.11 99.48 0.71 0.30 16 17 H -0.27 -1.45 6.72 99.48 0.67 -0.78 16 18 H -0.26 -0.98 7.11 99.48 0.71 -0.28 16 19 Si 1.12 -10.53 11.03 68.60 0.76 -9.78 16 20 C -0.47 2.51 8.55 113.37 0.97 3.48 16 21 C -0.46 3.68 8.65 113.37 0.98 4.66 16 22 C -0.46 3.61 8.65 113.37 0.98 4.59 16 23 H 0.13 -1.65 7.73 -2.91 -0.02 -1.68 16 24 H 0.10 -0.74 7.46 -2.91 -0.02 -0.76 16 25 H 0.17 -1.42 8.06 -2.91 -0.02 -1.45 16 26 H 0.15 -0.55 7.14 -2.91 -0.02 -0.57 16 27 H 0.13 0.54 4.89 -2.91 -0.01 0.53 16 28 H 0.10 -0.46 5.61 -2.39 -0.01 -0.48 16 29 H 0.37 -1.61 5.96 -74.06 -0.44 -2.05 16 30 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 31 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 32 H 0.07 -0.35 7.36 -2.39 -0.02 -0.36 16 33 H 0.08 -0.68 7.96 -2.38 -0.02 -0.70 16 34 H 0.07 -0.53 7.96 -2.39 -0.02 -0.55 16 35 H 0.07 -0.55 6.96 -2.39 -0.02 -0.57 16 36 H 0.07 -0.55 7.96 -2.39 -0.02 -0.57 16 37 H 0.07 -0.51 7.96 -2.39 -0.02 -0.53 16 38 H 0.07 -0.63 7.96 -2.39 -0.02 -0.65 16 Total: 0.00 -10.03 325.89 8.74 -1.29 By element: Atomic # 1 Polarization: -13.17 SS G_CDS: 1.36 Total: -11.81 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 4.48 Total: 20.17 kcal Atomic # 8 Polarization: -0.61 SS G_CDS: -1.89 Total: -2.50 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 2.27 Total: -1.50 kcal Atomic # 14 Polarization: -8.17 SS G_CDS: 2.52 Total: -5.65 kcal Total: -10.03 8.74 -1.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.194 kcal (2) G-P(sol) polarization free energy of solvation -10.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -1.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds