Wall clock time and date at job start Mon Mar 8 2021 10:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32566 * 1 3 3 C 1.47806 * 120.00418 * 2 1 4 4 C 1.39517 * 120.14374 * 180.02562 * 3 2 1 5 5 C 1.37997 * 119.85449 * 180.02562 * 4 3 2 6 6 C 1.38323 * 120.14176 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.85228 * 180.02562 * 6 5 4 8 8 O 1.42900 * 109.47328 * 104.99775 * 7 6 5 9 9 Si 1.86299 * 109.47180 * 344.99384 * 7 6 5 10 10 H 1.48493 * 109.46923 * 60.00607 * 9 7 6 11 11 H 1.48496 * 109.46886 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47094 * 300.00458 * 9 7 6 13 13 C 1.38361 * 120.29001 * 359.97438 * 6 5 4 14 14 C 1.50704 * 119.93067 * 180.02562 * 13 6 5 15 15 F 1.39903 * 109.46934 * 180.02562 * 14 13 6 16 16 F 1.39893 * 109.47329 * 300.00379 * 14 13 6 17 17 F 1.39901 * 109.46485 * 60.00590 * 14 13 6 18 18 C 1.37954 * 120.14037 * 359.76753 * 13 6 5 19 19 Si 1.86801 * 119.99740 * 179.97438 * 2 1 3 20 20 C 1.86298 * 109.47258 * 359.97438 * 19 2 1 21 21 C 1.86298 * 109.47026 * 120.00111 * 19 2 1 22 22 C 1.86301 * 109.47053 * 240.00125 * 19 2 1 23 23 H 1.08002 * 120.00489 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.99743 * 359.72519 * 1 2 3 25 25 H 1.07997 * 120.07044 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.92349 * 180.02562 * 5 4 3 27 27 H 1.09002 * 109.46786 * 224.99814 * 7 6 5 28 28 H 0.96693 * 113.99815 * 299.99815 * 8 7 6 29 29 H 1.08003 * 120.07525 * 180.25439 * 18 13 6 30 30 H 1.09005 * 109.47054 * 60.00202 * 20 19 2 31 31 H 1.08995 * 109.47563 * 179.97438 * 20 19 2 32 32 H 1.09004 * 109.47189 * 300.00136 * 20 19 2 33 33 H 1.08998 * 109.47156 * 60.00082 * 21 19 2 34 34 H 1.09003 * 109.47006 * 180.02562 * 21 19 2 35 35 H 1.08997 * 109.46887 * 299.99740 * 21 19 2 36 36 H 1.08999 * 109.47593 * 60.00210 * 22 19 2 37 37 H 1.09003 * 109.47036 * 179.97438 * 22 19 2 38 38 H 1.08998 * 109.47195 * 299.99958 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2800 0.0000 4 6 3.4599 1.2834 -0.0005 5 6 4.1440 2.4819 0.0000 6 6 3.4494 3.6781 0.0016 7 6 4.2030 4.9832 0.0016 8 8 4.1378 5.5709 -1.2993 9 14 5.9833 4.6723 0.4541 10 1 6.5920 3.7493 -0.5372 11 1 6.7256 5.9583 0.4547 12 1 6.0510 4.0615 1.8059 13 6 2.0658 3.6816 0.0021 14 6 1.3172 4.9896 0.0033 15 9 -0.0592 4.7391 0.0043 16 9 1.6584 5.7212 1.1458 17 9 1.6575 5.7225 -1.1387 18 6 1.3700 2.4904 -0.0038 19 14 2.2596 -1.6178 0.0007 20 6 1.0489 -3.0338 0.0021 21 6 3.3307 -1.7172 -1.5203 22 6 3.3306 -1.7158 1.5219 23 1 -0.5401 -0.9353 0.0004 24 1 -0.5400 0.9354 0.0045 25 1 4.0034 0.3501 -0.0014 26 1 5.2240 2.4858 -0.0008 27 1 3.7562 5.6607 0.7292 28 1 4.5182 5.0218 -1.9984 29 1 0.2900 2.4944 -0.0075 30 1 0.4219 -2.9766 -0.8877 31 1 1.5938 -3.9778 0.0021 32 1 0.4226 -2.9754 0.8923 33 1 4.0390 -0.8887 -1.5207 34 1 3.8753 -2.6614 -1.5201 35 1 2.7040 -1.6598 -2.4103 36 1 2.7040 -1.6577 2.4119 37 1 3.8752 -2.6601 1.5226 38 1 4.0390 -0.8874 1.5216 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419822.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:24:06 Heat of formation + Delta-G solvation = -170.538163 kcal Electronic energy + Delta-G solvation = -23695.144890 eV Core-core repulsion = 19825.935822 eV Total energy + Delta-G solvation = -3869.209069 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 304.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.24426 -48.81025 -48.61896 -40.95544 -37.89747 -35.21633 -33.23946 -31.36547 -29.48904 -28.37142 -28.26363 -27.45704 -26.45210 -23.77553 -22.93460 -20.85137 -19.54757 -19.51224 -19.00162 -18.14025 -17.26637 -16.66612 -16.27366 -16.07603 -15.64856 -15.49814 -15.27185 -15.13138 -14.93148 -14.82737 -14.71626 -14.35055 -14.24546 -14.11257 -14.00694 -13.82861 -13.39925 -13.37054 -13.13635 -13.11299 -12.96675 -12.84110 -12.55760 -12.19155 -12.09156 -11.66214 -11.62795 -10.80014 -10.75087 -10.63332 -10.49236 -10.35802 -9.29844 -0.39203 -0.07854 1.07122 1.20120 1.41113 1.51698 1.58108 1.80856 1.89379 1.96947 2.12437 2.61040 2.62385 2.67918 2.95265 3.29790 3.40305 3.55473 3.68756 3.79900 4.05909 4.15130 4.34937 4.48513 4.63960 4.76384 4.84083 4.84258 4.87790 4.87914 4.90792 4.92018 4.96507 5.06518 5.14499 5.33213 5.57351 5.63741 5.69483 5.70645 5.82891 6.65716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.393 4.393 3 C -0.030 4.030 4 C -0.089 4.089 5 C -0.123 4.123 6 C -0.084 4.084 7 C -0.114 4.114 8 O -0.541 6.541 9 Si 0.991 3.009 10 H -0.226 1.226 11 H -0.273 1.273 12 H -0.251 1.251 13 C -0.166 4.166 14 C 0.503 3.497 15 F -0.185 7.185 16 F -0.182 7.182 17 F -0.167 7.167 18 C -0.090 4.090 19 Si 1.105 2.895 20 C -0.463 4.463 21 C -0.463 4.463 22 C -0.464 4.464 23 H 0.127 0.873 24 H 0.091 0.909 25 H 0.164 0.836 26 H 0.158 0.842 27 H 0.110 0.890 28 H 0.390 0.610 29 H 0.142 0.858 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.590 -6.467 -0.107 6.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.432 4.432 3 C -0.031 4.031 4 C -0.107 4.107 5 C -0.140 4.140 6 C -0.085 4.085 7 C -0.223 4.223 8 O -0.348 6.348 9 Si 0.811 3.189 10 H -0.149 1.149 11 H -0.199 1.199 12 H -0.174 1.174 13 C -0.167 4.167 14 C 0.449 3.551 15 F -0.166 7.166 16 F -0.164 7.164 17 F -0.148 7.148 18 C -0.108 4.108 19 Si 1.293 2.707 20 C -0.570 4.570 21 C -0.570 4.570 22 C -0.571 4.571 23 H 0.145 0.855 24 H 0.110 0.890 25 H 0.181 0.819 26 H 0.175 0.825 27 H 0.128 0.872 28 H 0.239 0.761 29 H 0.159 0.841 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.089 -6.020 0.433 6.781 hybrid contribution -0.978 0.503 -0.324 1.146 sum 2.111 -5.517 0.109 5.908 Atomic orbital electron populations 1.24707 0.96001 1.03028 0.92869 1.28535 1.01633 1.08159 1.04886 1.19204 0.93558 0.92825 0.97465 1.21887 0.93374 0.99422 0.95992 1.21324 1.01420 0.91048 1.00218 1.20234 0.92171 0.97068 0.98988 1.25508 1.12955 0.93751 0.90043 1.86603 1.85106 1.47023 1.16103 0.85107 0.72193 0.80136 0.81437 1.14899 1.19856 1.17406 1.19787 0.94634 0.91648 1.10666 1.18487 0.76876 0.85760 0.74020 1.93147 1.32956 1.94222 1.96288 1.93154 1.91835 1.79827 1.51552 1.93279 1.91775 1.79258 1.50486 1.21413 1.01194 0.90886 0.97282 0.77523 0.65128 0.61461 0.66617 1.26282 1.11779 1.14241 1.04737 1.26344 1.10059 1.05133 1.15477 1.26358 1.10085 1.05122 1.15543 0.85520 0.89047 0.81875 0.82477 0.87174 0.76127 0.84055 0.90924 0.90543 0.90942 0.90697 0.90380 0.91317 0.91351 0.90367 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.45 13.39 66.67 0.89 1.35 16 2 C -0.39 1.28 4.70 23.65 0.11 1.39 16 3 C -0.03 0.00 5.84 -20.12 -0.12 -0.11 16 4 C -0.09 0.25 8.71 22.52 0.20 0.45 16 5 C -0.12 0.27 8.64 22.23 0.19 0.46 16 6 C -0.08 -0.15 5.23 -19.81 -0.10 -0.25 16 7 C -0.11 -0.15 2.01 71.24 0.14 -0.01 16 8 O -0.54 -1.30 10.85 -148.98 -1.62 -2.92 16 9 Si 0.99 -2.22 25.48 68.60 1.75 -0.47 16 10 H -0.23 1.30 6.72 99.48 0.67 1.97 16 11 H -0.27 -0.51 7.11 99.48 0.71 0.20 16 12 H -0.25 0.39 7.11 99.48 0.71 1.10 16 13 C -0.17 -0.79 5.37 -19.90 -0.11 -0.90 16 14 C 0.50 3.88 2.87 71.24 0.20 4.09 16 15 F -0.18 -1.49 15.97 44.97 0.72 -0.77 16 16 F -0.18 -1.57 15.40 44.97 0.69 -0.88 16 17 F -0.17 -1.65 14.87 44.97 0.67 -0.98 16 18 C -0.09 -0.26 8.78 22.52 0.20 -0.07 16 19 Si 1.10 -8.60 10.80 68.60 0.74 -7.86 16 20 C -0.46 2.95 7.86 113.37 0.89 3.84 16 21 C -0.46 3.04 8.65 113.37 0.98 4.02 16 22 C -0.46 2.96 8.65 113.37 0.98 3.94 16 23 H 0.13 -0.89 7.05 -2.91 -0.02 -0.91 16 24 H 0.09 -0.25 6.04 -2.91 -0.02 -0.27 16 25 H 0.16 -1.34 3.71 -2.91 -0.01 -1.35 16 26 H 0.16 -1.10 4.86 -2.91 -0.01 -1.11 16 27 H 0.11 0.36 5.98 -2.39 -0.01 0.35 16 28 H 0.39 -2.04 8.70 -74.06 -0.64 -2.68 16 29 H 0.14 0.25 5.26 -2.91 -0.02 0.24 16 30 H 0.07 -0.46 7.96 -2.38 -0.02 -0.48 16 31 H 0.08 -0.49 7.96 -2.39 -0.02 -0.51 16 32 H 0.07 -0.45 7.96 -2.38 -0.02 -0.47 16 33 H 0.07 -0.55 6.57 -2.39 -0.02 -0.56 16 34 H 0.08 -0.56 7.96 -2.39 -0.02 -0.58 16 35 H 0.07 -0.37 7.96 -2.39 -0.02 -0.38 16 36 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 37 H 0.08 -0.55 7.96 -2.39 -0.02 -0.57 16 38 H 0.07 -0.52 6.58 -2.39 -0.02 -0.54 16 Total: 0.00 -11.20 315.49 8.60 -2.61 By element: Atomic # 1 Polarization: -8.11 SS G_CDS: 1.18 Total: -6.93 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 4.46 Total: 18.20 kcal Atomic # 8 Polarization: -1.30 SS G_CDS: -1.62 Total: -2.92 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 2.08 Total: -2.63 kcal Atomic # 14 Polarization: -10.82 SS G_CDS: 2.49 Total: -8.34 kcal Total: -11.20 8.60 -2.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419822.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.931 kcal (2) G-P(sol) polarization free energy of solvation -11.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -2.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds