Wall clock time and date at job start Mon Mar 8 2021 10:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32566 * 1 3 3 C 1.47816 * 119.99836 * 2 1 4 4 C 1.39510 * 120.14591 * 114.28658 * 3 2 1 5 5 C 1.37992 * 119.85842 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.93067 * 179.97438 * 5 4 3 7 7 C 1.38318 * 120.14242 * 359.72650 * 5 4 3 8 8 C 1.38375 * 120.28271 * 0.54942 * 7 5 4 9 9 C 1.37952 * 120.14200 * 359.44876 * 8 7 5 10 10 C 1.50697 * 120.06839 * 180.25008 * 9 8 7 11 11 O 1.42903 * 109.46974 * 105.19508 * 10 9 8 12 12 Si 1.86298 * 109.47457 * 345.19539 * 10 9 8 13 13 H 1.48498 * 109.47271 * 180.02562 * 12 10 9 14 14 H 1.48504 * 109.47047 * 299.99855 * 12 10 9 15 15 H 1.48494 * 109.47091 * 59.99642 * 12 10 9 16 16 Si 1.86797 * 120.00092 * 179.97438 * 2 1 3 17 17 C 1.86300 * 109.47117 * 176.53362 * 16 2 1 18 18 C 1.86300 * 109.47418 * 296.53534 * 16 2 1 19 19 C 1.86305 * 109.46915 * 56.53577 * 16 2 1 20 20 H 1.07994 * 119.99924 * 180.30389 * 1 2 3 21 21 H 1.08005 * 120.00049 * 0.30683 * 1 2 3 22 22 H 1.08007 * 120.06718 * 0.02562 * 4 3 2 23 23 H 1.08997 * 109.46990 * 89.99935 * 6 5 4 24 24 H 1.08998 * 109.47015 * 210.00309 * 6 5 4 25 25 H 1.09006 * 109.46906 * 330.00268 * 6 5 4 26 26 H 1.08003 * 119.86104 * 180.29507 * 7 5 4 27 27 H 1.08000 * 119.92359 * 179.71762 * 8 7 5 28 28 H 1.09006 * 109.46860 * 225.18953 * 10 9 8 29 29 H 0.96696 * 113.99752 * 179.97438 * 11 10 9 30 30 H 1.09000 * 109.47067 * 65.94469 * 17 16 2 31 31 H 1.08999 * 109.46899 * 185.93773 * 17 16 2 32 32 H 1.08994 * 109.47326 * 305.94040 * 17 16 2 33 33 H 1.09004 * 109.46729 * 59.99401 * 18 16 2 34 34 H 1.08991 * 109.47504 * 179.97438 * 18 16 2 35 35 H 1.08999 * 109.47285 * 300.00411 * 18 16 2 36 36 H 1.09003 * 109.46968 * 60.00301 * 19 16 2 37 37 H 1.08997 * 109.46731 * 179.97438 * 19 16 2 38 38 H 1.08999 * 109.47135 * 299.99713 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0647 1.2801 0.0000 4 6 2.8447 1.6388 1.0996 5 6 3.5318 2.8355 1.0936 6 6 4.3744 3.2249 2.2808 7 6 3.4528 3.6762 -0.0020 8 6 2.6764 3.3289 -1.0935 9 6 1.9847 2.1354 -1.0999 10 6 1.1441 1.7562 -2.2918 11 8 1.8142 0.7429 -3.0443 12 14 0.8788 3.2546 -3.3666 13 1 0.0500 2.8811 -4.5408 14 1 0.1824 4.3076 -2.5847 15 1 2.1920 3.7696 -3.8307 16 14 2.2597 -1.6177 0.0007 17 6 4.0885 -1.2789 -0.1056 18 6 1.8907 -2.5472 1.5725 19 6 1.7314 -2.6404 -1.4642 20 1 -0.5400 -0.9353 0.0050 21 1 -0.5400 0.9353 -0.0050 22 1 2.9107 0.9812 1.9539 23 1 5.3890 2.8507 2.1446 24 1 4.3965 4.3110 2.3701 25 1 3.9470 2.7945 3.1865 26 1 3.9962 4.6096 -0.0039 27 1 2.6153 3.9918 -1.9439 28 1 0.1802 1.3781 -1.9511 29 1 1.3294 0.4495 -3.8278 30 1 4.4175 -0.7723 0.8017 31 1 4.6269 -2.2207 -0.2114 32 1 4.2911 -0.6455 -0.9692 33 1 0.8206 -2.7453 1.6347 34 1 2.4353 -3.4913 1.5728 35 1 2.1997 -1.9489 2.4296 36 1 1.9473 -2.0966 -2.3838 37 1 2.2767 -3.5841 -1.4640 38 1 0.6614 -2.8387 -1.4019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:24:55 Heat of formation + Delta-G solvation = -42.792425 kcal Electronic energy + Delta-G solvation = -16900.637936 eV Core-core repulsion = 14445.330265 eV Total energy + Delta-G solvation = -2455.307671 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.61638 -37.60099 -35.17899 -33.50632 -30.65464 -29.46460 -29.10421 -28.34165 -28.16309 -25.20598 -23.93230 -22.13797 -19.88478 -18.40374 -17.11928 -16.87540 -16.41782 -15.51872 -15.16652 -14.80512 -14.61178 -14.36745 -14.22380 -14.08100 -13.82496 -13.80012 -13.31391 -13.25539 -13.19183 -13.12833 -13.03754 -12.97496 -12.64298 -12.25241 -12.11893 -11.86698 -11.68218 -11.10972 -10.83948 -10.76418 -10.23987 -10.12332 -9.57172 -9.14433 0.33936 0.46667 1.13217 1.21135 1.45043 1.50529 1.84722 1.92481 1.98392 2.21696 2.64947 2.86554 3.55834 3.88137 3.94941 4.01954 4.15540 4.34095 4.51498 4.58583 4.70380 4.75131 4.75771 4.76940 4.82352 4.82749 4.87981 4.90597 4.93912 4.96893 5.10586 5.24915 5.36296 5.50565 5.55884 5.62494 5.66678 5.70241 5.76317 5.85174 6.15734 6.65329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.356 4.356 3 C -0.002 4.002 4 C -0.119 4.119 5 C -0.076 4.076 6 C -0.117 4.117 7 C -0.124 4.124 8 C -0.115 4.115 9 C -0.081 4.081 10 C -0.076 4.076 11 O -0.538 6.538 12 Si 0.937 3.063 13 H -0.257 1.257 14 H -0.250 1.250 15 H -0.248 1.248 16 Si 1.053 2.947 17 C -0.444 4.444 18 C -0.450 4.450 19 C -0.444 4.444 20 H 0.103 0.897 21 H 0.092 0.908 22 H 0.125 0.875 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.123 0.877 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.376 0.624 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.062 -0.645 0.387 1.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.397 4.397 3 C -0.002 4.002 4 C -0.137 4.137 5 C -0.076 4.076 6 C -0.174 4.174 7 C -0.142 4.142 8 C -0.133 4.133 9 C -0.081 4.081 10 C -0.187 4.187 11 O -0.344 6.344 12 Si 0.760 3.240 13 H -0.181 1.181 14 H -0.174 1.174 15 H -0.172 1.172 16 Si 1.244 2.756 17 C -0.552 4.552 18 C -0.557 4.557 19 C -0.552 4.552 20 H 0.121 0.879 21 H 0.111 0.889 22 H 0.143 0.857 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.141 0.859 27 H 0.138 0.862 28 H 0.093 0.907 29 H 0.223 0.777 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.787 0.237 0.348 0.893 hybrid contribution -0.428 -0.195 -0.225 0.522 sum -1.216 0.042 0.123 1.222 Atomic orbital electron populations 1.24113 0.95407 1.01556 0.96317 1.27898 1.00849 1.08063 1.02858 1.18743 0.95778 0.92899 0.92782 1.21076 0.97738 0.96662 0.98181 1.19885 0.97348 0.94401 0.95924 1.20834 0.99171 1.02043 0.95351 1.20965 0.99854 1.00040 0.93336 1.20978 0.97160 0.96521 0.98657 1.19243 0.99773 0.94524 0.94539 1.24705 0.97482 1.00595 0.95924 1.86511 1.48526 1.57293 1.42022 0.85904 0.80865 0.77832 0.79366 1.18117 1.17363 1.17153 0.78299 0.66576 0.63432 0.67289 1.26080 1.19601 1.04749 1.04775 1.26168 1.05046 1.08401 1.16099 1.26075 1.05318 1.08843 1.14963 0.87891 0.88949 0.85705 0.90909 0.91396 0.91375 0.85858 0.86168 0.90669 0.77695 0.91411 0.91456 0.90824 0.91280 0.91050 0.91222 0.90458 0.91322 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.05 11.98 28.83 0.35 0.40 16 2 C -0.36 -0.16 3.52 -37.57 -0.13 -0.30 16 3 C 0.00 0.00 4.81 -105.01 -0.51 -0.51 16 4 C -0.12 -0.20 9.01 -39.20 -0.35 -0.56 16 5 C -0.08 -0.12 5.87 -104.68 -0.61 -0.74 16 6 C -0.12 0.05 10.01 36.01 0.36 0.41 16 7 C -0.12 -0.23 9.69 -39.50 -0.38 -0.62 16 8 C -0.12 -0.28 8.65 -39.64 -0.34 -0.63 16 9 C -0.08 -0.20 5.31 -104.24 -0.55 -0.75 16 10 C -0.08 -0.05 2.10 36.00 0.08 0.03 16 11 O -0.54 -0.22 12.80 -35.23 -0.45 -0.67 16 12 Si 0.94 0.41 25.49 -169.99 -4.33 -3.92 16 13 H -0.26 -0.10 7.11 56.52 0.40 0.30 16 14 H -0.25 -0.32 7.11 56.52 0.40 0.08 16 15 H -0.25 -0.39 6.74 56.52 0.38 -0.01 16 16 Si 1.05 -1.00 12.14 -169.99 -2.06 -3.06 16 17 C -0.44 -0.25 8.51 101.05 0.86 0.61 16 18 C -0.45 0.35 8.65 101.05 0.87 1.23 16 19 C -0.44 0.25 8.65 101.05 0.87 1.13 16 20 H 0.10 -0.21 7.72 -52.49 -0.41 -0.62 16 21 H 0.09 -0.03 7.66 -52.48 -0.40 -0.43 16 22 H 0.13 0.01 8.06 -52.48 -0.42 -0.41 16 23 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 24 H 0.07 -0.07 8.09 -51.93 -0.42 -0.49 16 25 H 0.07 -0.07 8.08 -51.93 -0.42 -0.49 16 26 H 0.12 0.01 8.06 -52.48 -0.42 -0.41 16 27 H 0.12 0.16 4.89 -52.49 -0.26 -0.09 16 28 H 0.08 -0.05 5.77 -51.93 -0.30 -0.34 16 29 H 0.38 -1.39 8.74 45.56 0.40 -0.99 16 30 H 0.07 0.03 7.94 -51.93 -0.41 -0.38 16 31 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 32 H 0.07 0.14 7.96 -51.93 -0.41 -0.27 16 33 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 34 H 0.07 -0.06 7.96 -51.93 -0.41 -0.48 16 35 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 36 H 0.08 -0.01 7.96 -51.93 -0.41 -0.42 16 37 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 38 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 LS Contribution 315.00 15.07 4.75 4.75 Total: 0.00 -4.23 315.00 -7.20 -11.44 By element: Atomic # 1 Polarization: -2.63 SS G_CDS: -5.61 Total: -8.24 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 0.51 Total: -0.30 kcal Atomic # 8 Polarization: -0.22 SS G_CDS: -0.45 Total: -0.67 kcal Atomic # 14 Polarization: -0.58 SS G_CDS: -6.40 Total: -6.98 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -4.23 -7.20 -11.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.357 kcal (2) G-P(sol) polarization free energy of solvation -4.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds