Wall clock time and date at job start Mon Mar 8 2021 10:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32566 * 1 3 3 C 1.47816 * 119.99836 * 2 1 4 4 C 1.39510 * 120.14591 * 114.28658 * 3 2 1 5 5 C 1.37992 * 119.85842 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.93067 * 179.97438 * 5 4 3 7 7 C 1.38318 * 120.14242 * 359.72650 * 5 4 3 8 8 C 1.38375 * 120.28271 * 0.54942 * 7 5 4 9 9 C 1.37952 * 120.14200 * 359.44876 * 8 7 5 10 10 C 1.50697 * 120.06839 * 180.25008 * 9 8 7 11 11 O 1.42903 * 109.46974 * 105.19508 * 10 9 8 12 12 Si 1.86298 * 109.47457 * 345.19539 * 10 9 8 13 13 H 1.48498 * 109.47271 * 180.02562 * 12 10 9 14 14 H 1.48504 * 109.47047 * 299.99855 * 12 10 9 15 15 H 1.48494 * 109.47091 * 59.99642 * 12 10 9 16 16 Si 1.86797 * 120.00092 * 179.97438 * 2 1 3 17 17 C 1.86300 * 109.47117 * 176.53362 * 16 2 1 18 18 C 1.86300 * 109.47418 * 296.53534 * 16 2 1 19 19 C 1.86305 * 109.46915 * 56.53577 * 16 2 1 20 20 H 1.07994 * 119.99924 * 180.30389 * 1 2 3 21 21 H 1.08005 * 120.00049 * 0.30683 * 1 2 3 22 22 H 1.08007 * 120.06718 * 0.02562 * 4 3 2 23 23 H 1.08997 * 109.46990 * 89.99935 * 6 5 4 24 24 H 1.08998 * 109.47015 * 210.00309 * 6 5 4 25 25 H 1.09006 * 109.46906 * 330.00268 * 6 5 4 26 26 H 1.08003 * 119.86104 * 180.29507 * 7 5 4 27 27 H 1.08000 * 119.92359 * 179.71762 * 8 7 5 28 28 H 1.09006 * 109.46860 * 225.18953 * 10 9 8 29 29 H 0.96696 * 113.99752 * 179.97438 * 11 10 9 30 30 H 1.09000 * 109.47067 * 65.94469 * 17 16 2 31 31 H 1.08999 * 109.46899 * 185.93773 * 17 16 2 32 32 H 1.08994 * 109.47326 * 305.94040 * 17 16 2 33 33 H 1.09004 * 109.46729 * 59.99401 * 18 16 2 34 34 H 1.08991 * 109.47504 * 179.97438 * 18 16 2 35 35 H 1.08999 * 109.47285 * 300.00411 * 18 16 2 36 36 H 1.09003 * 109.46968 * 60.00301 * 19 16 2 37 37 H 1.08997 * 109.46731 * 179.97438 * 19 16 2 38 38 H 1.08999 * 109.47135 * 299.99713 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0647 1.2801 0.0000 4 6 2.8447 1.6388 1.0996 5 6 3.5318 2.8355 1.0936 6 6 4.3744 3.2249 2.2808 7 6 3.4528 3.6762 -0.0020 8 6 2.6764 3.3289 -1.0935 9 6 1.9847 2.1354 -1.0999 10 6 1.1441 1.7562 -2.2918 11 8 1.8142 0.7429 -3.0443 12 14 0.8788 3.2546 -3.3666 13 1 0.0500 2.8811 -4.5408 14 1 0.1824 4.3076 -2.5847 15 1 2.1920 3.7696 -3.8307 16 14 2.2597 -1.6177 0.0007 17 6 4.0885 -1.2789 -0.1056 18 6 1.8907 -2.5472 1.5725 19 6 1.7314 -2.6404 -1.4642 20 1 -0.5400 -0.9353 0.0050 21 1 -0.5400 0.9353 -0.0050 22 1 2.9107 0.9812 1.9539 23 1 5.3890 2.8507 2.1446 24 1 4.3965 4.3110 2.3701 25 1 3.9470 2.7945 3.1865 26 1 3.9962 4.6096 -0.0039 27 1 2.6153 3.9918 -1.9439 28 1 0.1802 1.3781 -1.9511 29 1 1.3294 0.4495 -3.8278 30 1 4.4175 -0.7723 0.8017 31 1 4.6269 -2.2207 -0.2114 32 1 4.2911 -0.6455 -0.9692 33 1 0.8206 -2.7453 1.6347 34 1 2.4353 -3.4913 1.5728 35 1 2.1997 -1.9489 2.4296 36 1 1.9473 -2.0966 -2.3838 37 1 2.2767 -3.5841 -1.4640 38 1 0.6614 -2.8387 -1.4019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:24:54 Heat of formation + Delta-G solvation = -33.158807 kcal Electronic energy + Delta-G solvation = -16900.220191 eV Core-core repulsion = 14445.330265 eV Total energy + Delta-G solvation = -2454.889926 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.67405 -37.61239 -35.18205 -33.55273 -30.67832 -29.42634 -29.11403 -28.25559 -28.15531 -25.22558 -23.99566 -22.19387 -19.89165 -18.40465 -17.16934 -16.92935 -16.45320 -15.57592 -15.17482 -14.83305 -14.62923 -14.37310 -14.22714 -14.03236 -13.82376 -13.72777 -13.29906 -13.19139 -13.14636 -13.12246 -13.02100 -12.94498 -12.68681 -12.29962 -12.18228 -11.89664 -11.75817 -11.06929 -10.82961 -10.74461 -10.23830 -10.10228 -9.66541 -9.20547 0.26266 0.36165 1.12099 1.21615 1.39883 1.43661 1.85662 1.90218 2.04500 2.30063 2.65224 2.83791 3.57655 3.86065 3.91700 3.98196 4.12234 4.33307 4.50884 4.56511 4.67771 4.80732 4.83324 4.84091 4.85337 4.87834 4.89067 4.91975 4.94385 4.99623 5.08706 5.24256 5.33132 5.50571 5.58403 5.59474 5.66585 5.68713 5.71967 5.86087 6.10538 6.86208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.373 4.373 3 C -0.011 4.011 4 C -0.131 4.131 5 C -0.085 4.085 6 C -0.116 4.116 7 C -0.138 4.138 8 C -0.133 4.133 9 C -0.100 4.100 10 C -0.074 4.074 11 O -0.551 6.551 12 Si 0.965 3.035 13 H -0.251 1.251 14 H -0.265 1.265 15 H -0.269 1.269 16 Si 1.101 2.899 17 C -0.459 4.459 18 C -0.456 4.456 19 C -0.452 4.452 20 H 0.123 0.877 21 H 0.089 0.911 22 H 0.137 0.863 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.135 0.865 27 H 0.123 0.877 28 H 0.088 0.912 29 H 0.393 0.607 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 -1.470 0.698 2.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.412 4.412 3 C -0.011 4.011 4 C -0.149 4.149 5 C -0.085 4.085 6 C -0.173 4.173 7 C -0.156 4.156 8 C -0.150 4.150 9 C -0.101 4.101 10 C -0.185 4.185 11 O -0.359 6.359 12 Si 0.790 3.210 13 H -0.175 1.175 14 H -0.189 1.189 15 H -0.194 1.194 16 Si 1.289 2.711 17 C -0.565 4.565 18 C -0.563 4.563 19 C -0.559 4.559 20 H 0.141 0.859 21 H 0.107 0.893 22 H 0.155 0.845 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.153 0.847 27 H 0.140 0.860 28 H 0.106 0.894 29 H 0.243 0.757 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.421 -0.586 0.641 1.666 hybrid contribution -0.205 0.084 -0.332 0.399 sum -1.626 -0.502 0.310 1.729 Atomic orbital electron populations 1.24305 0.95187 1.02383 0.95216 1.28154 1.01336 1.07921 1.03836 1.19012 0.95878 0.93508 0.92675 1.21339 0.97830 0.97017 0.98673 1.20175 0.97473 0.94391 0.96467 1.20865 0.99036 1.02545 0.94806 1.21209 1.00141 1.00791 0.93483 1.21178 0.97759 0.96999 0.99114 1.19551 1.00263 0.94735 0.95503 1.24676 0.97617 1.00717 0.95452 1.86472 1.49318 1.57158 1.42986 0.85524 0.79387 0.77131 0.78970 1.17542 1.18936 1.19362 0.77560 0.64334 0.62272 0.66896 1.26299 1.21890 1.04482 1.03837 1.26218 1.05540 1.08528 1.16019 1.26153 1.05981 1.08956 1.14847 0.85903 0.89307 0.84482 0.90481 0.90770 0.90607 0.84680 0.85952 0.89424 0.75706 0.91604 0.91154 0.92581 0.90656 0.90802 0.91236 0.91017 0.91149 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.20 11.98 66.67 0.80 1.00 16 2 C -0.37 -0.27 3.52 23.66 0.08 -0.18 16 3 C -0.01 -0.05 4.81 -20.12 -0.10 -0.15 16 4 C -0.13 -0.54 9.01 22.52 0.20 -0.34 16 5 C -0.09 -0.34 5.87 -19.90 -0.12 -0.46 16 6 C -0.12 0.08 10.01 71.24 0.71 0.80 16 7 C -0.14 -0.69 9.69 22.32 0.22 -0.48 16 8 C -0.13 -0.85 8.65 22.23 0.19 -0.66 16 9 C -0.10 -0.60 5.31 -19.62 -0.10 -0.70 16 10 C -0.07 -0.13 2.10 71.24 0.15 0.02 16 11 O -0.55 -0.55 12.80 -148.98 -1.91 -2.46 16 12 Si 0.96 1.54 25.49 68.60 1.75 3.28 16 13 H -0.25 -0.11 7.11 99.48 0.71 0.59 16 14 H -0.26 -0.99 7.11 99.48 0.71 -0.28 16 15 H -0.27 -1.27 6.74 99.48 0.67 -0.60 16 16 Si 1.10 -2.49 12.14 68.60 0.83 -1.66 16 17 C -0.46 -0.84 8.51 113.37 0.97 0.13 16 18 C -0.46 1.17 8.65 113.37 0.98 2.15 16 19 C -0.45 0.85 8.65 113.37 0.98 1.83 16 20 H 0.12 -0.72 7.72 -2.91 -0.02 -0.74 16 21 H 0.09 -0.08 7.66 -2.91 -0.02 -0.11 16 22 H 0.14 0.07 8.06 -2.91 -0.02 0.05 16 23 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 24 H 0.07 -0.15 8.09 -2.39 -0.02 -0.17 16 25 H 0.07 -0.18 8.08 -2.38 -0.02 -0.20 16 26 H 0.14 0.18 8.06 -2.91 -0.02 0.15 16 27 H 0.12 0.57 4.89 -2.91 -0.01 0.55 16 28 H 0.09 -0.12 5.77 -2.38 -0.01 -0.13 16 29 H 0.39 -3.02 8.74 -74.06 -0.65 -3.67 16 30 H 0.06 0.12 7.94 -2.39 -0.02 0.10 16 31 H 0.07 0.05 7.96 -2.39 -0.02 0.03 16 32 H 0.05 0.30 7.96 -2.39 -0.02 0.28 16 33 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 34 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 35 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 36 H 0.07 -0.03 7.96 -2.39 -0.02 -0.05 16 37 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 38 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 Total: 0.00 -10.07 315.00 6.73 -3.35 By element: Atomic # 1 Polarization: -6.56 SS G_CDS: 1.09 Total: -5.47 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 4.96 Total: 2.97 kcal Atomic # 8 Polarization: -0.55 SS G_CDS: -1.91 Total: -2.46 kcal Atomic # 14 Polarization: -0.96 SS G_CDS: 2.58 Total: 1.62 kcal Total: -10.07 6.73 -3.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.813 kcal (2) G-P(sol) polarization free energy of solvation -10.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds