Wall clock time and date at job start Mon Mar 8 2021 10:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32600 * 1 3 3 C 1.47767 * 119.99952 * 2 1 4 4 C 1.39656 * 120.26045 * 133.48364 * 3 2 1 5 5 C 1.37471 * 119.86640 * 180.02562 * 4 3 2 6 6 C 1.39039 * 120.92180 * 0.33933 * 5 4 3 7 7 O 1.36406 * 111.26159 * 179.10568 * 6 5 4 8 8 C 1.43759 * 109.11987 * 18.78847 * 7 6 5 9 9 C 1.51670 * 132.04689 * 180.38186 * 5 4 3 10 10 C 1.39453 * 119.11076 * 359.49894 * 6 5 4 11 11 C 1.50702 * 119.78865 * 180.33360 * 10 6 5 12 12 O 1.42902 * 109.46920 * 284.99264 * 11 10 6 13 13 Si 1.86299 * 109.46894 * 164.99726 * 11 10 6 14 14 H 1.48502 * 109.47087 * 59.99876 * 13 11 10 15 15 H 1.48503 * 109.47126 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47417 * 299.99988 * 13 11 10 17 17 C 1.37624 * 120.42155 * 0.32913 * 10 6 5 18 18 Si 1.86805 * 119.99485 * 180.02562 * 2 1 3 19 19 C 1.86297 * 109.46913 * 273.16452 * 18 2 1 20 20 C 1.86296 * 109.47425 * 33.16786 * 18 2 1 21 21 C 1.86306 * 109.46678 * 153.16718 * 18 2 1 22 22 H 1.08001 * 120.00181 * 180.02562 * 1 2 3 23 23 H 1.08001 * 119.99949 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.06609 * 0.04661 * 4 3 2 25 25 H 1.09001 * 110.74781 * 214.00712 * 8 7 6 26 26 H 1.08995 * 110.74420 * 90.84659 * 8 7 6 27 27 H 1.09002 * 110.93579 * 46.40266 * 9 5 4 28 28 H 1.08993 * 110.97155 * 282.72575 * 9 5 4 29 29 H 1.08992 * 109.47293 * 44.99868 * 11 10 6 30 30 H 0.96696 * 114.00151 * 300.00860 * 12 11 10 31 31 H 1.08001 * 119.89540 * 180.02562 * 17 10 6 32 32 H 1.08994 * 109.47290 * 60.00775 * 19 18 2 33 33 H 1.09003 * 109.46459 * 180.02562 * 19 18 2 34 34 H 1.09003 * 109.47171 * 299.99893 * 19 18 2 35 35 H 1.09000 * 109.46876 * 59.99462 * 20 18 2 36 36 H 1.08995 * 109.46969 * 179.97438 * 20 18 2 37 37 H 1.09004 * 109.47196 * 300.00074 * 20 18 2 38 38 H 1.08997 * 109.47347 * 65.84220 * 21 18 2 39 39 H 1.08994 * 109.46713 * 185.84110 * 21 18 2 40 40 H 1.09000 * 109.47129 * 305.84397 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0648 1.2797 0.0000 4 6 3.1356 1.4742 0.8752 5 6 3.8170 2.6681 0.8687 6 6 3.4516 3.6946 0.0050 7 8 4.2436 4.7916 0.1774 8 6 5.4485 4.4004 0.8569 9 6 5.0004 3.1667 1.6758 10 6 2.3842 3.4969 -0.8705 11 6 1.9800 4.5965 -1.8185 12 8 1.2855 5.6159 -1.0971 13 14 0.8644 3.8998 -3.1379 14 1 -0.3481 3.3205 -2.5058 15 1 0.4666 4.9831 -4.0725 16 1 1.5860 2.8403 -3.8876 17 6 1.6978 2.3041 -0.8743 18 14 2.2599 -1.6179 -0.0007 19 6 2.4863 -2.2049 1.7528 20 6 1.2971 -2.8903 -0.9622 21 6 3.9278 -1.3716 -0.7935 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 3.4280 0.6880 1.5556 25 1 5.7958 5.1960 1.5162 26 1 6.2242 4.1278 0.1414 27 1 5.7901 2.4164 1.7134 28 1 4.6930 3.4567 2.6804 29 1 2.8699 5.0216 -2.2824 30 1 0.4812 5.3082 -0.6573 31 1 0.8727 2.1600 -1.5562 32 1 1.5106 -2.3490 2.2166 33 1 3.0317 -3.1487 1.7523 34 1 3.0497 -1.4604 2.3153 35 1 1.1645 -2.5468 -1.9881 36 1 1.8422 -3.8341 -0.9630 37 1 0.3212 -3.0343 -0.4984 38 1 4.5297 -0.7065 -0.1744 39 1 4.4306 -2.3340 -0.8881 40 1 3.7987 -0.9304 -1.7818 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419828.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:25:24 Heat of formation + Delta-G solvation = -66.368417 kcal Electronic energy + Delta-G solvation = -20025.346739 eV Core-core repulsion = 17122.108404 eV Total energy + Delta-G solvation = -2903.238335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.125 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.07451 -39.08995 -37.62418 -34.41397 -33.79306 -30.94870 -29.87799 -29.52719 -28.46695 -28.31672 -26.67998 -24.24958 -23.89806 -21.87438 -20.29541 -18.70941 -17.88052 -17.37518 -17.00408 -16.73512 -15.93621 -15.84595 -15.09217 -14.75779 -14.61478 -14.29105 -14.18479 -14.08726 -14.01671 -13.86665 -13.65591 -13.49624 -13.31829 -13.26497 -13.13569 -12.84526 -12.82011 -12.50715 -12.15700 -12.00218 -11.84162 -11.67454 -11.21813 -10.92559 -10.82095 -10.33739 -10.27602 -9.82606 -8.75313 0.12856 0.24155 1.12533 1.17841 1.42216 1.54434 1.68871 1.82424 1.93199 2.05255 2.36146 2.49966 2.75345 3.41628 3.51606 3.62047 3.73643 3.91294 4.03144 4.14523 4.27313 4.39156 4.49718 4.59643 4.65523 4.66156 4.69715 4.70789 4.73651 4.74386 4.75667 4.76212 4.81192 5.03601 5.06201 5.35354 5.39241 5.40066 5.43328 5.50429 5.53637 5.63502 5.80383 6.22755 6.64603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.367 4.367 3 C -0.055 4.055 4 C -0.062 4.062 5 C -0.169 4.169 6 C 0.130 3.870 7 O -0.294 6.294 8 C 0.048 3.952 9 C -0.111 4.111 10 C -0.136 4.136 11 C -0.073 4.073 12 O -0.534 6.534 13 Si 0.945 3.055 14 H -0.251 1.251 15 H -0.252 1.252 16 H -0.247 1.247 17 C -0.094 4.094 18 Si 1.046 2.954 19 C -0.447 4.447 20 C -0.449 4.449 21 C -0.446 4.446 22 H 0.106 0.894 23 H 0.094 0.906 24 H 0.129 0.871 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.373 0.627 31 H 0.131 0.869 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.785 -3.369 1.146 3.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.408 4.408 3 C -0.055 4.055 4 C -0.080 4.080 5 C -0.170 4.170 6 C 0.084 3.916 7 O -0.207 6.207 8 C -0.027 4.027 9 C -0.148 4.148 10 C -0.137 4.137 11 C -0.184 4.184 12 O -0.339 6.339 13 Si 0.768 3.232 14 H -0.175 1.175 15 H -0.176 1.176 16 H -0.170 1.170 17 C -0.112 4.112 18 Si 1.238 2.762 19 C -0.555 4.555 20 C -0.556 4.556 21 C -0.554 4.554 22 H 0.124 0.876 23 H 0.112 0.888 24 H 0.147 0.853 25 H 0.126 0.874 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.133 0.867 30 H 0.219 0.781 31 H 0.148 0.852 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.687 -3.030 0.214 3.115 hybrid contribution -0.071 -0.122 0.722 0.736 sum 0.616 -3.152 0.936 3.345 Atomic orbital electron populations 1.24313 0.95514 1.01958 0.95025 1.27917 1.00916 1.07858 1.04103 1.18660 0.96184 0.93740 0.96900 1.20364 0.93925 0.95697 0.98014 1.20728 1.00921 0.95809 0.99554 1.19387 0.92501 0.86041 0.93687 1.86996 1.29399 1.29225 1.75101 1.23870 0.86399 0.97312 0.95131 1.21830 0.95912 0.97631 0.99450 1.19410 0.98029 0.96636 0.99590 1.24899 1.02848 0.91170 0.99475 1.86561 1.41839 1.34924 1.70570 0.85791 0.79270 0.79955 0.78203 1.17512 1.17556 1.17026 1.20991 0.98968 0.91726 0.99491 0.78407 0.66515 0.63531 0.67776 1.26126 1.04845 1.06042 1.18447 1.26133 1.08741 1.11841 1.08925 1.26106 1.16999 1.04650 1.07636 0.87594 0.88805 0.85310 0.87430 0.90367 0.88799 0.88932 0.86697 0.78053 0.85200 0.91077 0.90960 0.91232 0.91015 0.90870 0.91147 0.91134 0.91140 0.91106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.12 13.31 28.83 0.38 0.50 16 2 C -0.37 0.17 4.42 -37.59 -0.17 0.00 16 3 C -0.05 -0.06 5.26 -104.97 -0.55 -0.62 16 4 C -0.06 -0.06 8.66 -39.33 -0.34 -0.40 16 5 C -0.17 -0.29 6.26 -104.13 -0.65 -0.94 16 6 C 0.13 0.43 6.77 -38.83 -0.26 0.16 16 7 O -0.29 -1.08 11.06 -21.04 -0.23 -1.31 16 8 C 0.05 -0.01 8.00 38.05 0.30 0.30 16 9 C -0.11 0.07 7.12 -26.51 -0.19 -0.12 16 10 C -0.14 -0.34 5.28 -104.39 -0.55 -0.90 16 11 C -0.07 -0.13 2.74 36.01 0.10 -0.03 16 12 O -0.53 -1.40 12.88 -35.23 -0.45 -1.85 16 13 Si 0.95 0.63 25.48 -169.99 -4.33 -3.70 16 14 H -0.25 -0.04 6.72 56.52 0.38 0.34 16 15 H -0.25 -0.47 7.11 56.52 0.40 -0.07 16 16 H -0.25 -0.27 7.11 56.52 0.40 0.13 16 17 C -0.09 -0.16 7.92 -39.30 -0.31 -0.47 16 18 Si 1.05 -2.40 11.18 -169.99 -1.90 -4.30 16 19 C -0.45 0.82 8.65 101.05 0.87 1.69 16 20 C -0.45 0.81 8.56 101.05 0.87 1.68 16 21 C -0.45 0.52 8.63 101.05 0.87 1.40 16 22 H 0.11 -0.27 7.37 -52.49 -0.39 -0.66 16 23 H 0.09 -0.07 7.85 -52.49 -0.41 -0.48 16 24 H 0.13 -0.15 7.01 -52.49 -0.37 -0.52 16 25 H 0.11 -0.21 8.14 -51.93 -0.42 -0.64 16 26 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 27 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 28 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 29 H 0.12 0.21 7.96 -51.93 -0.41 -0.21 16 30 H 0.37 -0.32 8.70 45.56 0.40 0.07 16 31 H 0.13 0.06 4.72 -52.49 -0.25 -0.19 16 32 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 34 H 0.07 -0.13 7.62 -51.93 -0.40 -0.53 16 35 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 36 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 37 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 38 H 0.07 -0.07 7.49 -51.93 -0.39 -0.46 16 39 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 40 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 LS Contribution 329.86 15.07 4.97 4.97 Total: 0.00 -5.37 329.86 -7.18 -12.54 By element: Atomic # 1 Polarization: -3.00 SS G_CDS: -5.60 Total: -8.60 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 0.37 Total: 2.25 kcal Atomic # 8 Polarization: -2.48 SS G_CDS: -0.69 Total: -3.16 kcal Atomic # 14 Polarization: -1.77 SS G_CDS: -6.23 Total: -8.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -5.37 -7.18 -12.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419828.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.827 kcal (2) G-P(sol) polarization free energy of solvation -5.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds