Wall clock time and date at job start Mon Mar 8 2021 10:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32600 * 1 3 3 C 1.47767 * 119.99952 * 2 1 4 4 C 1.39656 * 120.26045 * 133.48364 * 3 2 1 5 5 C 1.37471 * 119.86640 * 180.02562 * 4 3 2 6 6 C 1.39039 * 120.92180 * 0.33933 * 5 4 3 7 7 O 1.36406 * 111.26159 * 179.10568 * 6 5 4 8 8 C 1.43759 * 109.11987 * 18.78847 * 7 6 5 9 9 C 1.51670 * 132.04689 * 180.38186 * 5 4 3 10 10 C 1.39453 * 119.11076 * 359.49894 * 6 5 4 11 11 C 1.50702 * 119.78865 * 180.33360 * 10 6 5 12 12 O 1.42902 * 109.46920 * 284.99264 * 11 10 6 13 13 Si 1.86299 * 109.46894 * 164.99726 * 11 10 6 14 14 H 1.48502 * 109.47087 * 59.99876 * 13 11 10 15 15 H 1.48503 * 109.47126 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47417 * 299.99988 * 13 11 10 17 17 C 1.37624 * 120.42155 * 0.32913 * 10 6 5 18 18 Si 1.86805 * 119.99485 * 180.02562 * 2 1 3 19 19 C 1.86297 * 109.46913 * 273.16452 * 18 2 1 20 20 C 1.86296 * 109.47425 * 33.16786 * 18 2 1 21 21 C 1.86306 * 109.46678 * 153.16718 * 18 2 1 22 22 H 1.08001 * 120.00181 * 180.02562 * 1 2 3 23 23 H 1.08001 * 119.99949 * 359.97438 * 1 2 3 24 24 H 1.07999 * 120.06609 * 0.04661 * 4 3 2 25 25 H 1.09001 * 110.74781 * 214.00712 * 8 7 6 26 26 H 1.08995 * 110.74420 * 90.84659 * 8 7 6 27 27 H 1.09002 * 110.93579 * 46.40266 * 9 5 4 28 28 H 1.08993 * 110.97155 * 282.72575 * 9 5 4 29 29 H 1.08992 * 109.47293 * 44.99868 * 11 10 6 30 30 H 0.96696 * 114.00151 * 300.00860 * 12 11 10 31 31 H 1.08001 * 119.89540 * 180.02562 * 17 10 6 32 32 H 1.08994 * 109.47290 * 60.00775 * 19 18 2 33 33 H 1.09003 * 109.46459 * 180.02562 * 19 18 2 34 34 H 1.09003 * 109.47171 * 299.99893 * 19 18 2 35 35 H 1.09000 * 109.46876 * 59.99462 * 20 18 2 36 36 H 1.08995 * 109.46969 * 179.97438 * 20 18 2 37 37 H 1.09004 * 109.47196 * 300.00074 * 20 18 2 38 38 H 1.08997 * 109.47347 * 65.84220 * 21 18 2 39 39 H 1.08994 * 109.46713 * 185.84110 * 21 18 2 40 40 H 1.09000 * 109.47129 * 305.84397 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3260 0.0000 0.0000 3 6 2.0648 1.2797 0.0000 4 6 3.1356 1.4742 0.8752 5 6 3.8170 2.6681 0.8687 6 6 3.4516 3.6946 0.0050 7 8 4.2436 4.7916 0.1774 8 6 5.4485 4.4004 0.8569 9 6 5.0004 3.1667 1.6758 10 6 2.3842 3.4969 -0.8705 11 6 1.9800 4.5965 -1.8185 12 8 1.2855 5.6159 -1.0971 13 14 0.8644 3.8998 -3.1379 14 1 -0.3481 3.3205 -2.5058 15 1 0.4666 4.9831 -4.0725 16 1 1.5860 2.8403 -3.8876 17 6 1.6978 2.3041 -0.8743 18 14 2.2599 -1.6179 -0.0007 19 6 2.4863 -2.2049 1.7528 20 6 1.2971 -2.8903 -0.9622 21 6 3.9278 -1.3716 -0.7935 22 1 -0.5400 -0.9353 0.0004 23 1 -0.5400 0.9353 0.0004 24 1 3.4280 0.6880 1.5556 25 1 5.7958 5.1960 1.5162 26 1 6.2242 4.1278 0.1414 27 1 5.7901 2.4164 1.7134 28 1 4.6930 3.4567 2.6804 29 1 2.8699 5.0216 -2.2824 30 1 0.4812 5.3082 -0.6573 31 1 0.8727 2.1600 -1.5562 32 1 1.5106 -2.3490 2.2166 33 1 3.0317 -3.1487 1.7523 34 1 3.0497 -1.4604 2.3153 35 1 1.1645 -2.5468 -1.9881 36 1 1.8422 -3.8341 -0.9630 37 1 0.3212 -3.0343 -0.4984 38 1 4.5297 -0.7065 -0.1744 39 1 4.4306 -2.3340 -0.8881 40 1 3.7987 -0.9304 -1.7818 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419828.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:25:23 Heat of formation + Delta-G solvation = -58.979693 kcal Electronic energy + Delta-G solvation = -20025.026340 eV Core-core repulsion = 17122.108404 eV Total energy + Delta-G solvation = -2902.917936 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.125 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.13672 -39.16333 -37.74536 -34.40079 -33.85061 -30.95634 -29.86215 -29.39080 -28.28464 -28.18636 -26.77907 -24.23866 -23.93207 -21.93635 -20.27975 -18.80379 -17.94831 -17.44406 -17.03314 -16.76398 -16.03708 -15.91915 -15.05712 -14.80674 -14.65510 -14.32041 -14.04675 -14.01916 -13.92663 -13.73543 -13.64582 -13.38833 -13.16570 -13.14319 -12.98814 -12.84937 -12.78703 -12.49692 -12.25382 -12.00542 -11.88513 -11.75096 -11.10733 -10.77425 -10.75781 -10.40886 -10.23709 -9.88689 -8.82194 0.06870 0.16127 1.08498 1.19642 1.35634 1.46434 1.82770 1.83830 2.00530 2.20006 2.34490 2.58924 2.75828 3.42462 3.45932 3.64157 3.67842 3.92534 4.11149 4.14409 4.22930 4.38249 4.47327 4.59581 4.79439 4.81477 4.82994 4.83222 4.85239 4.87313 4.89426 4.90009 4.92426 5.03163 5.03771 5.30387 5.34949 5.41896 5.56922 5.61615 5.68524 5.68908 5.86027 6.16059 6.64397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.383 4.383 3 C -0.057 4.057 4 C -0.069 4.069 5 C -0.176 4.176 6 C 0.100 3.900 7 O -0.322 6.322 8 C 0.040 3.960 9 C -0.107 4.107 10 C -0.146 4.146 11 C -0.080 4.080 12 O -0.553 6.553 13 Si 0.982 3.018 14 H -0.240 1.240 15 H -0.270 1.270 16 H -0.253 1.253 17 C -0.107 4.107 18 Si 1.102 2.898 19 C -0.456 4.456 20 C -0.459 4.459 21 C -0.461 4.461 22 H 0.125 0.875 23 H 0.089 0.911 24 H 0.149 0.851 25 H 0.123 0.877 26 H 0.086 0.914 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.386 0.614 31 H 0.139 0.861 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 -4.654 1.771 5.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.423 4.423 3 C -0.057 4.057 4 C -0.087 4.087 5 C -0.176 4.176 6 C 0.055 3.945 7 O -0.236 6.236 8 C -0.034 4.034 9 C -0.144 4.144 10 C -0.147 4.147 11 C -0.190 4.190 12 O -0.360 6.360 13 Si 0.804 3.196 14 H -0.164 1.164 15 H -0.195 1.195 16 H -0.176 1.176 17 C -0.124 4.124 18 Si 1.290 2.710 19 C -0.564 4.564 20 C -0.567 4.567 21 C -0.568 4.568 22 H 0.143 0.857 23 H 0.107 0.893 24 H 0.167 0.833 25 H 0.141 0.859 26 H 0.104 0.896 27 H 0.132 0.868 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.234 0.766 31 H 0.156 0.844 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.516 -4.309 0.852 4.422 hybrid contribution -0.004 0.295 0.537 0.613 sum 0.512 -4.014 1.389 4.278 Atomic orbital electron populations 1.24524 0.95507 1.02708 0.94188 1.28299 1.01340 1.07961 1.04699 1.18956 0.96193 0.94194 0.96395 1.20641 0.93783 0.95983 0.98276 1.21070 1.01489 0.95658 0.99431 1.19693 0.93298 0.86622 0.94904 1.86943 1.30668 1.30178 1.75841 1.24119 0.85517 0.98224 0.95533 1.21897 0.95588 0.97728 0.99206 1.19576 0.98227 0.97100 0.99811 1.25059 1.03071 0.90954 0.99885 1.86509 1.42735 1.35779 1.70967 0.85268 0.78863 0.78731 0.76722 1.16352 1.19495 1.17647 1.21154 0.99386 0.91740 1.00154 0.77555 0.64712 0.61838 0.66868 1.26222 1.05035 1.06320 1.18786 1.26245 1.09282 1.12181 1.08957 1.26302 1.18387 1.04748 1.07352 0.85708 0.89315 0.83330 0.85900 0.89595 0.86849 0.88263 0.87627 0.76581 0.84382 0.90943 0.90653 0.91077 0.91289 0.90648 0.90568 0.91311 0.90750 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.34 13.31 66.66 0.89 1.22 16 2 C -0.38 0.55 4.42 23.63 0.10 0.65 16 3 C -0.06 -0.14 5.26 -20.09 -0.11 -0.25 16 4 C -0.07 -0.13 8.66 22.43 0.19 0.07 16 5 C -0.18 -0.69 6.26 -19.54 -0.12 -0.82 16 6 C 0.10 0.81 6.77 22.76 0.15 0.96 16 7 O -0.32 -2.89 11.06 -98.21 -1.09 -3.98 16 8 C 0.04 0.01 8.00 72.56 0.58 0.59 16 9 C -0.11 0.15 7.12 30.74 0.22 0.37 16 10 C -0.15 -0.96 5.28 -19.72 -0.10 -1.06 16 11 C -0.08 -0.43 2.74 71.24 0.20 -0.23 16 12 O -0.55 -3.80 12.88 -148.98 -1.92 -5.72 16 13 Si 0.98 2.04 25.48 68.60 1.75 3.79 16 14 H -0.24 -0.01 6.72 99.48 0.67 0.66 16 15 H -0.27 -1.31 7.11 99.48 0.71 -0.60 16 16 H -0.25 -0.71 7.11 99.48 0.71 0.00 16 17 C -0.11 -0.44 7.92 22.45 0.18 -0.26 16 18 Si 1.10 -5.99 11.18 68.60 0.77 -5.22 16 19 C -0.46 2.22 8.65 113.37 0.98 3.21 16 20 C -0.46 2.13 8.56 113.37 0.97 3.10 16 21 C -0.46 1.17 8.63 113.37 0.98 2.15 16 22 H 0.12 -0.83 7.37 -2.91 -0.02 -0.85 16 23 H 0.09 -0.15 7.85 -2.91 -0.02 -0.17 16 24 H 0.15 -0.46 7.01 -2.91 -0.02 -0.48 16 25 H 0.12 -0.46 8.14 -2.39 -0.02 -0.48 16 26 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 27 H 0.11 -0.64 8.14 -2.39 -0.02 -0.66 16 28 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.11 0.65 7.96 -2.39 -0.02 0.63 16 30 H 0.39 -0.14 8.70 -74.06 -0.64 -0.78 16 31 H 0.14 0.19 4.72 -2.91 -0.01 0.17 16 32 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 33 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 34 H 0.07 -0.35 7.62 -2.39 -0.02 -0.37 16 35 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 36 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 37 H 0.08 -0.43 7.69 -2.39 -0.02 -0.45 16 38 H 0.07 -0.15 7.49 -2.39 -0.02 -0.17 16 39 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 40 H 0.06 -0.04 7.96 -2.39 -0.02 -0.06 16 Total: 0.00 -12.99 329.86 5.71 -7.28 By element: Atomic # 1 Polarization: -6.94 SS G_CDS: 1.10 Total: -5.84 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.11 Total: 9.69 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -3.01 Total: -9.70 kcal Atomic # 14 Polarization: -3.95 SS G_CDS: 2.51 Total: -1.43 kcal Total: -12.99 5.71 -7.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419828.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.701 kcal (2) G-P(sol) polarization free energy of solvation -12.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds