Wall clock time and date at job start Mon Mar 8 2021 10:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32785 * 1 3 3 C 1.47493 * 120.00433 * 2 1 4 4 C 1.41578 * 120.39006 * 294.39781 * 3 2 1 5 5 C 1.40401 * 121.34915 * 0.02562 * 4 3 2 6 6 C 1.36723 * 118.17597 * 180.02562 * 5 4 3 7 7 C 1.39258 * 119.88610 * 0.02562 * 6 5 4 8 8 N 1.31114 * 121.71764 * 359.97438 * 7 6 5 9 9 C 1.33732 * 121.31766 * 0.02562 * 8 7 6 10 10 C 1.40596 * 120.95456 * 179.97438 * 9 8 7 11 11 C 1.50697 * 119.90252 * 0.05215 * 10 9 8 12 12 O 1.42899 * 109.46860 * 74.99868 * 11 10 9 13 13 Si 1.86294 * 109.47235 * 195.00091 * 11 10 9 14 14 H 1.48506 * 109.46842 * 180.02562 * 13 11 10 15 15 H 1.48498 * 109.47316 * 60.00287 * 13 11 10 16 16 H 1.48503 * 109.47297 * 300.00014 * 13 11 10 17 17 C 1.36246 * 120.20055 * 180.32914 * 10 9 8 18 18 C 1.38665 * 120.39093 * 114.42050 * 3 2 1 19 19 Si 1.86800 * 119.99789 * 179.97438 * 2 1 3 20 20 C 1.86302 * 109.47408 * 275.09322 * 19 2 1 21 21 C 1.86298 * 109.47104 * 35.09128 * 19 2 1 22 22 C 1.86302 * 109.47284 * 155.09044 * 19 2 1 23 23 H 1.07997 * 120.00292 * 184.95958 * 1 2 3 24 24 H 1.08003 * 119.99745 * 4.95823 * 1 2 3 25 25 H 1.07998 * 120.91595 * 0.04783 * 5 4 3 26 26 H 1.08003 * 120.05323 * 179.97438 * 6 5 4 27 27 H 1.08002 * 119.14245 * 179.97438 * 7 6 5 28 28 H 1.09002 * 109.46836 * 315.00395 * 11 10 9 29 29 H 0.96701 * 113.99893 * 179.97438 * 12 11 10 30 30 H 1.08002 * 119.37249 * 179.72621 * 17 10 9 31 31 H 1.07994 * 119.73376 * 359.95931 * 18 3 2 32 32 H 1.08990 * 109.47323 * 59.99580 * 20 19 2 33 33 H 1.09001 * 109.47226 * 180.02562 * 20 19 2 34 34 H 1.09005 * 109.46502 * 299.99613 * 20 19 2 35 35 H 1.09005 * 109.47361 * 59.99579 * 21 19 2 36 36 H 1.08997 * 109.47384 * 180.02562 * 21 19 2 37 37 H 1.09003 * 109.47102 * 300.00041 * 21 19 2 38 38 H 1.08998 * 109.46830 * 55.11545 * 22 19 2 39 39 H 1.08995 * 109.47166 * 175.11601 * 22 19 2 40 40 H 1.09001 * 109.47239 * 295.11755 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3279 0.0000 0.0000 3 6 2.0654 1.2773 0.0000 4 6 1.9867 2.1498 -1.1122 5 6 1.2115 1.8298 -2.2382 6 6 1.1824 2.7194 -3.2760 7 6 1.9106 3.9037 -3.1953 8 7 2.6332 4.1982 -2.1416 9 6 2.7035 3.3705 -1.0936 10 6 3.4812 3.6937 0.0322 11 6 4.2491 4.9899 0.0679 12 8 3.3457 6.0724 0.3001 13 14 5.5092 4.9276 1.4385 14 1 6.2655 6.2052 1.4740 15 1 6.4481 3.8027 1.1971 16 1 4.8183 4.7257 2.7375 17 6 3.5472 2.8360 1.0888 18 6 2.8445 1.6375 1.0891 19 14 2.2618 -1.6178 0.0007 20 6 2.4373 -2.2328 1.7505 21 6 1.3276 -2.8746 -1.0085 22 6 3.9520 -1.3595 -0.7392 23 1 -0.5400 -0.9318 0.0809 24 1 -0.5400 0.9319 -0.0808 25 1 0.6532 0.9064 -2.2833 26 1 0.5963 2.5036 -4.1571 27 1 1.8793 4.5977 -4.0222 28 1 4.7562 5.1380 -0.8855 29 1 3.7719 6.9397 0.3359 30 1 4.1522 3.0957 1.9449 31 1 2.9102 0.9783 1.9420 32 1 1.4485 -2.3839 2.1834 33 1 2.9826 -3.1766 1.7509 34 1 2.9839 -1.4975 2.3409 35 1 1.2248 -2.5147 -2.0323 36 1 1.8723 -3.8187 -1.0077 37 1 0.3387 -3.0257 -0.5755 38 1 4.4659 -0.5626 -0.2017 39 1 4.5280 -2.2814 -0.6599 40 1 3.8508 -1.0833 -1.7888 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:27:39 Heat of formation + Delta-G solvation = -3.152254 kcal Electronic energy + Delta-G solvation = -20655.854405 eV Core-core repulsion = 17752.161328 eV Total energy + Delta-G solvation = -2903.693076 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.84265 -38.47211 -37.62165 -35.55961 -32.95814 -31.49339 -31.04693 -29.58314 -28.49127 -28.45052 -26.57898 -24.99222 -24.56241 -22.51564 -20.43872 -19.05275 -18.31804 -17.89742 -17.54952 -16.26335 -16.16057 -15.59232 -15.26576 -15.02997 -14.78802 -14.55714 -14.24796 -14.17719 -14.13299 -13.94240 -13.84483 -13.68931 -13.39463 -13.32145 -13.15686 -13.10591 -12.56164 -12.49208 -12.27776 -12.02332 -11.68805 -11.43088 -11.23020 -11.02318 -10.93862 -10.33203 -10.20188 -10.13486 -9.69120 -8.85690 -0.61288 -0.06188 0.75089 1.09942 1.19591 1.46270 1.51848 1.62139 1.79840 1.92708 1.96758 2.08390 2.51102 3.13742 3.37423 3.52223 3.72301 3.84187 3.90850 3.99862 4.09390 4.23195 4.35621 4.41304 4.59710 4.60819 4.63601 4.69358 4.69551 4.70062 4.74943 4.76507 4.87843 4.91578 5.06604 5.14396 5.20685 5.38698 5.42545 5.46082 5.48621 5.52034 5.56843 5.69285 5.93371 6.74869 7.08271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.376 4.376 3 C 0.000 4.000 4 C -0.098 4.098 5 C -0.055 4.055 6 C -0.179 4.179 7 C 0.132 3.868 8 N -0.463 5.463 9 C 0.151 3.849 10 C -0.058 4.058 11 C -0.068 4.068 12 O -0.538 6.538 13 Si 0.938 3.062 14 H -0.254 1.254 15 H -0.248 1.248 16 H -0.247 1.247 17 C -0.097 4.097 18 C -0.120 4.120 19 Si 1.051 2.949 20 C -0.447 4.447 21 C -0.448 4.448 22 C -0.447 4.447 23 H 0.109 0.891 24 H 0.095 0.905 25 H 0.140 0.860 26 H 0.137 0.863 27 H 0.159 0.841 28 H 0.079 0.921 29 H 0.377 0.623 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.183 -2.778 -0.630 2.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.417 4.417 3 C -0.001 4.001 4 C -0.100 4.100 5 C -0.081 4.081 6 C -0.199 4.199 7 C -0.041 4.041 8 N -0.170 5.170 9 C 0.029 3.971 10 C -0.059 4.059 11 C -0.179 4.179 12 O -0.343 6.343 13 Si 0.760 3.240 14 H -0.178 1.178 15 H -0.171 1.171 16 H -0.171 1.171 17 C -0.116 4.116 18 C -0.137 4.137 19 Si 1.242 2.758 20 C -0.555 4.555 21 C -0.556 4.556 22 C -0.555 4.555 23 H 0.127 0.873 24 H 0.113 0.887 25 H 0.157 0.843 26 H 0.155 0.845 27 H 0.176 0.824 28 H 0.097 0.903 29 H 0.224 0.776 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.483 -2.450 0.179 2.503 hybrid contribution -0.596 -0.099 -0.502 0.785 sum -0.113 -2.549 -0.322 2.571 Atomic orbital electron populations 1.24375 0.95288 1.02118 0.93993 1.27989 1.01009 1.07810 1.04853 1.18968 0.95760 0.92841 0.92562 1.18808 0.99844 0.95501 0.95851 1.21490 0.95415 0.99315 0.91848 1.21962 1.01798 0.95940 1.00230 1.23024 0.90980 0.94754 0.95329 1.68104 1.18211 1.30754 0.99971 1.18511 0.95397 0.90001 0.93160 1.18909 0.98649 0.95273 0.93073 1.24605 0.98358 0.86797 1.08096 1.86524 1.35820 1.16695 1.95296 0.85943 0.77452 0.81735 0.78836 1.17775 1.17100 1.17095 1.20747 0.99109 0.94513 0.97256 1.21105 0.97418 0.96930 0.98292 0.78360 0.66358 0.63131 0.67958 1.26106 1.04782 1.06261 1.18319 1.26136 1.08508 1.11702 1.09257 1.26094 1.17464 1.04859 1.07121 0.87324 0.88697 0.84272 0.84468 0.82372 0.90306 0.77627 0.85289 0.84774 0.91073 0.90930 0.91048 0.91058 0.90772 0.91104 0.91012 0.91026 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.16 12.31 28.86 0.36 0.52 16 2 C -0.38 0.29 3.42 -37.68 -0.13 0.16 16 3 C 0.00 0.00 4.92 -104.70 -0.52 -0.52 16 4 C -0.10 -0.30 5.75 -106.54 -0.61 -0.91 16 5 C -0.05 -0.07 9.22 -39.32 -0.36 -0.43 16 6 C -0.18 -0.11 10.03 -39.75 -0.40 -0.51 16 7 C 0.13 0.26 11.15 -17.48 -0.19 0.06 16 8 N -0.46 -2.15 9.67 -11.00 -0.11 -2.26 16 9 C 0.15 0.70 6.58 -84.88 -0.56 0.15 16 10 C -0.06 -0.22 5.31 -104.45 -0.56 -0.78 16 11 C -0.07 -0.15 2.37 36.00 0.09 -0.06 16 12 O -0.54 -1.48 12.86 -35.23 -0.45 -1.93 16 13 Si 0.94 0.58 25.47 -169.99 -4.33 -3.75 16 14 H -0.25 -0.15 7.11 56.52 0.40 0.25 16 15 H -0.25 -0.25 7.11 56.52 0.40 0.16 16 16 H -0.25 -0.30 6.74 56.52 0.38 0.08 16 17 C -0.10 -0.22 8.58 -40.04 -0.34 -0.56 16 18 C -0.12 -0.16 9.38 -39.17 -0.37 -0.53 16 19 Si 1.05 -2.64 12.10 -169.99 -2.06 -4.70 16 20 C -0.45 0.88 8.65 101.05 0.87 1.76 16 21 C -0.45 1.00 8.65 101.05 0.87 1.88 16 22 C -0.45 0.42 8.65 101.05 0.87 1.29 16 23 H 0.11 -0.35 7.60 -52.49 -0.40 -0.75 16 24 H 0.09 -0.05 8.05 -52.48 -0.42 -0.47 16 25 H 0.14 -0.11 6.51 -52.49 -0.34 -0.45 16 26 H 0.14 -0.30 8.06 -52.48 -0.42 -0.72 16 27 H 0.16 -0.14 8.06 -52.49 -0.42 -0.56 16 28 H 0.08 0.14 7.83 -51.93 -0.41 -0.27 16 29 H 0.38 -0.68 8.74 45.56 0.40 -0.28 16 30 H 0.13 0.08 4.75 -52.49 -0.25 -0.17 16 31 H 0.13 -0.15 8.06 -52.49 -0.42 -0.57 16 32 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 34 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 35 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 36 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 37 H 0.07 -0.18 7.83 -51.93 -0.41 -0.59 16 38 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 39 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 40 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 LS Contribution 335.22 15.07 5.05 5.05 Total: 0.00 -6.55 335.22 -8.09 -14.64 By element: Atomic # 1 Polarization: -3.34 SS G_CDS: -5.22 Total: -8.56 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -0.97 Total: 1.51 kcal Atomic # 7 Polarization: -2.15 SS G_CDS: -0.11 Total: -2.26 kcal Atomic # 8 Polarization: -1.48 SS G_CDS: -0.45 Total: -1.93 kcal Atomic # 14 Polarization: -2.07 SS G_CDS: -6.39 Total: -8.45 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -6.55 -8.09 -14.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.489 kcal (2) G-P(sol) polarization free energy of solvation -6.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds