Wall clock time and date at job start Mon Mar 8 2021 10:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32785 * 1 3 3 C 1.47493 * 120.00433 * 2 1 4 4 C 1.41578 * 120.39006 * 294.39781 * 3 2 1 5 5 C 1.40401 * 121.34915 * 0.02562 * 4 3 2 6 6 C 1.36723 * 118.17597 * 180.02562 * 5 4 3 7 7 C 1.39258 * 119.88610 * 0.02562 * 6 5 4 8 8 N 1.31114 * 121.71764 * 359.97438 * 7 6 5 9 9 C 1.33732 * 121.31766 * 0.02562 * 8 7 6 10 10 C 1.40596 * 120.95456 * 179.97438 * 9 8 7 11 11 C 1.50697 * 119.90252 * 0.05215 * 10 9 8 12 12 O 1.42899 * 109.46860 * 74.99868 * 11 10 9 13 13 Si 1.86294 * 109.47235 * 195.00091 * 11 10 9 14 14 H 1.48506 * 109.46842 * 180.02562 * 13 11 10 15 15 H 1.48498 * 109.47316 * 60.00287 * 13 11 10 16 16 H 1.48503 * 109.47297 * 300.00014 * 13 11 10 17 17 C 1.36246 * 120.20055 * 180.32914 * 10 9 8 18 18 C 1.38665 * 120.39093 * 114.42050 * 3 2 1 19 19 Si 1.86800 * 119.99789 * 179.97438 * 2 1 3 20 20 C 1.86302 * 109.47408 * 275.09322 * 19 2 1 21 21 C 1.86298 * 109.47104 * 35.09128 * 19 2 1 22 22 C 1.86302 * 109.47284 * 155.09044 * 19 2 1 23 23 H 1.07997 * 120.00292 * 184.95958 * 1 2 3 24 24 H 1.08003 * 119.99745 * 4.95823 * 1 2 3 25 25 H 1.07998 * 120.91595 * 0.04783 * 5 4 3 26 26 H 1.08003 * 120.05323 * 179.97438 * 6 5 4 27 27 H 1.08002 * 119.14245 * 179.97438 * 7 6 5 28 28 H 1.09002 * 109.46836 * 315.00395 * 11 10 9 29 29 H 0.96701 * 113.99893 * 179.97438 * 12 11 10 30 30 H 1.08002 * 119.37249 * 179.72621 * 17 10 9 31 31 H 1.07994 * 119.73376 * 359.95931 * 18 3 2 32 32 H 1.08990 * 109.47323 * 59.99580 * 20 19 2 33 33 H 1.09001 * 109.47226 * 180.02562 * 20 19 2 34 34 H 1.09005 * 109.46502 * 299.99613 * 20 19 2 35 35 H 1.09005 * 109.47361 * 59.99579 * 21 19 2 36 36 H 1.08997 * 109.47384 * 180.02562 * 21 19 2 37 37 H 1.09003 * 109.47102 * 300.00041 * 21 19 2 38 38 H 1.08998 * 109.46830 * 55.11545 * 22 19 2 39 39 H 1.08995 * 109.47166 * 175.11601 * 22 19 2 40 40 H 1.09001 * 109.47239 * 295.11755 * 22 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3279 0.0000 0.0000 3 6 2.0654 1.2773 0.0000 4 6 1.9867 2.1498 -1.1122 5 6 1.2115 1.8298 -2.2382 6 6 1.1824 2.7194 -3.2760 7 6 1.9106 3.9037 -3.1953 8 7 2.6332 4.1982 -2.1416 9 6 2.7035 3.3705 -1.0936 10 6 3.4812 3.6937 0.0322 11 6 4.2491 4.9899 0.0679 12 8 3.3457 6.0724 0.3001 13 14 5.5092 4.9276 1.4385 14 1 6.2655 6.2052 1.4740 15 1 6.4481 3.8027 1.1971 16 1 4.8183 4.7257 2.7375 17 6 3.5472 2.8360 1.0888 18 6 2.8445 1.6375 1.0891 19 14 2.2618 -1.6178 0.0007 20 6 2.4373 -2.2328 1.7505 21 6 1.3276 -2.8746 -1.0085 22 6 3.9520 -1.3595 -0.7392 23 1 -0.5400 -0.9318 0.0809 24 1 -0.5400 0.9319 -0.0808 25 1 0.6532 0.9064 -2.2833 26 1 0.5963 2.5036 -4.1571 27 1 1.8793 4.5977 -4.0222 28 1 4.7562 5.1380 -0.8855 29 1 3.7719 6.9397 0.3359 30 1 4.1522 3.0957 1.9449 31 1 2.9102 0.9783 1.9420 32 1 1.4485 -2.3839 2.1834 33 1 2.9826 -3.1766 1.7509 34 1 2.9839 -1.4975 2.3409 35 1 1.2248 -2.5147 -2.0323 36 1 1.8723 -3.8187 -1.0077 37 1 0.3387 -3.0257 -0.5755 38 1 4.4659 -0.5626 -0.2017 39 1 4.5280 -2.2814 -0.6599 40 1 3.8508 -1.0833 -1.7888 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:27:38 Heat of formation + Delta-G solvation = 3.701623 kcal Electronic energy + Delta-G solvation = -20655.557198 eV Core-core repulsion = 17752.161328 eV Total energy + Delta-G solvation = -2903.395870 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 287.121 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.93832 -38.57266 -37.72226 -35.62069 -32.99072 -31.58960 -31.09308 -29.41622 -28.33641 -28.27432 -26.64844 -25.10265 -24.66121 -22.55217 -20.47392 -19.09145 -18.46184 -17.99512 -17.61976 -16.33824 -16.12848 -15.67148 -15.35499 -15.10904 -14.81930 -14.60476 -14.23082 -14.13385 -14.04250 -13.85844 -13.74949 -13.67811 -13.20639 -13.18292 -13.04853 -12.97096 -12.60497 -12.55007 -12.36425 -12.10635 -11.76193 -11.49181 -11.11869 -10.99279 -10.79209 -10.38203 -10.25284 -10.14600 -9.81308 -8.94674 -0.70363 -0.18377 0.76298 1.09703 1.11062 1.40975 1.46411 1.71489 1.83883 1.98570 1.99742 2.22573 2.65739 3.02674 3.29372 3.45694 3.68289 3.79969 3.88267 3.95431 4.03802 4.15148 4.30413 4.37685 4.54010 4.75585 4.79161 4.80273 4.81842 4.85301 4.87763 4.90365 4.90788 4.94481 4.99820 5.07853 5.19451 5.35967 5.41023 5.53895 5.56306 5.66638 5.69221 5.71984 5.88541 6.80273 6.95802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.390 4.390 3 C -0.001 4.001 4 C -0.118 4.118 5 C -0.060 4.060 6 C -0.179 4.179 7 C 0.121 3.879 8 N -0.496 5.496 9 C 0.122 3.878 10 C -0.089 4.089 11 C -0.076 4.076 12 O -0.559 6.559 13 Si 0.980 3.020 14 H -0.251 1.251 15 H -0.254 1.254 16 H -0.255 1.255 17 C -0.103 4.103 18 C -0.132 4.132 19 Si 1.113 2.887 20 C -0.458 4.458 21 C -0.456 4.456 22 C -0.467 4.467 23 H 0.133 0.867 24 H 0.083 0.917 25 H 0.160 0.840 26 H 0.168 0.832 27 H 0.181 0.819 28 H 0.073 0.927 29 H 0.393 0.607 30 H 0.141 0.859 31 H 0.157 0.843 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 -4.028 -0.544 4.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.429 4.429 3 C -0.002 4.002 4 C -0.120 4.120 5 C -0.086 4.086 6 C -0.198 4.198 7 C -0.051 4.051 8 N -0.204 5.204 9 C 0.001 3.999 10 C -0.090 4.090 11 C -0.185 4.185 12 O -0.368 6.368 13 Si 0.802 3.198 14 H -0.175 1.175 15 H -0.178 1.178 16 H -0.179 1.179 17 C -0.122 4.122 18 C -0.149 4.149 19 Si 1.300 2.700 20 C -0.565 4.565 21 C -0.564 4.564 22 C -0.573 4.573 23 H 0.151 0.849 24 H 0.102 0.898 25 H 0.177 0.823 26 H 0.186 0.814 27 H 0.198 0.802 28 H 0.091 0.909 29 H 0.242 0.758 30 H 0.159 0.841 31 H 0.175 0.825 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.272 -3.668 0.250 3.687 hybrid contribution -0.396 0.302 -0.591 0.773 sum -0.669 -3.366 -0.340 3.449 Atomic orbital electron populations 1.24544 0.95052 1.02755 0.92927 1.28322 1.01385 1.07439 1.05721 1.19274 0.95500 0.93389 0.92003 1.19102 1.00270 0.95495 0.97113 1.21799 0.95154 1.00199 0.91471 1.22290 1.01386 0.95093 1.01037 1.23535 0.90482 0.95789 0.95266 1.68083 1.19707 1.31739 1.00900 1.18845 0.96434 0.90966 0.93670 1.19239 0.99707 0.96383 0.93653 1.24821 0.98535 0.86239 1.08906 1.86471 1.37059 1.17877 1.95348 0.85332 0.76017 0.81320 0.77106 1.17522 1.17814 1.17918 1.20989 0.99225 0.94745 0.97237 1.21439 0.97322 0.97038 0.99149 0.77427 0.64072 0.61537 0.66976 1.26223 1.05101 1.06430 1.18788 1.26206 1.09069 1.11737 1.09359 1.26361 1.19494 1.04634 1.06770 0.84898 0.89844 0.82291 0.81438 0.80221 0.90938 0.75807 0.84147 0.82524 0.90615 0.90733 0.91114 0.91047 0.90646 0.90226 0.92006 0.90691 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.43 12.31 66.64 0.82 1.25 16 2 C -0.39 0.79 3.42 23.54 0.08 0.87 16 3 C 0.00 0.00 4.92 -19.91 -0.10 -0.10 16 4 C -0.12 -0.87 5.75 -21.11 -0.12 -1.00 16 5 C -0.06 -0.17 9.22 22.44 0.21 0.03 16 6 C -0.18 -0.21 10.03 22.16 0.22 0.01 16 7 C 0.12 0.59 11.15 85.05 0.95 1.54 16 8 N -0.50 -5.64 9.67 -188.73 -1.83 -7.47 16 9 C 0.12 1.41 6.58 40.25 0.26 1.67 16 10 C -0.09 -0.87 5.31 -19.75 -0.10 -0.98 16 11 C -0.08 -0.49 2.37 71.23 0.17 -0.32 16 12 O -0.56 -4.17 12.86 -148.98 -1.92 -6.08 16 13 Si 0.98 2.01 25.47 68.60 1.75 3.76 16 14 H -0.25 -0.32 7.11 99.48 0.71 0.39 16 15 H -0.25 -0.71 7.11 99.48 0.71 0.00 16 16 H -0.25 -0.77 6.74 99.48 0.67 -0.10 16 17 C -0.10 -0.63 8.58 21.97 0.19 -0.44 16 18 C -0.13 -0.47 9.38 22.54 0.21 -0.25 16 19 Si 1.11 -6.47 12.10 68.60 0.83 -5.64 16 20 C -0.46 2.29 8.65 113.37 0.98 3.27 16 21 C -0.46 2.73 8.65 113.37 0.98 3.71 16 22 C -0.47 0.63 8.65 113.37 0.98 1.61 16 23 H 0.13 -1.16 7.60 -2.91 -0.02 -1.18 16 24 H 0.08 -0.10 8.05 -2.91 -0.02 -0.13 16 25 H 0.16 -0.35 6.51 -2.91 -0.02 -0.37 16 26 H 0.17 -0.96 8.06 -2.91 -0.02 -0.98 16 27 H 0.18 -0.23 8.06 -2.91 -0.02 -0.26 16 28 H 0.07 0.46 7.83 -2.39 -0.02 0.44 16 29 H 0.39 -0.78 8.74 -74.06 -0.65 -1.42 16 30 H 0.14 0.33 4.75 -2.91 -0.01 0.32 16 31 H 0.16 -0.35 8.06 -2.91 -0.02 -0.38 16 32 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 33 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 34 H 0.07 -0.33 7.96 -2.38 -0.02 -0.35 16 35 H 0.07 -0.40 7.96 -2.38 -0.02 -0.42 16 36 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 37 H 0.08 -0.59 7.83 -2.39 -0.02 -0.61 16 38 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 39 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 40 H 0.06 0.01 7.96 -2.39 -0.02 -0.01 16 Total: 0.00 -16.76 335.22 5.67 -11.10 By element: Atomic # 1 Polarization: -7.64 SS G_CDS: 1.10 Total: -6.54 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 5.73 Total: 10.87 kcal Atomic # 7 Polarization: -5.64 SS G_CDS: -1.83 Total: -7.47 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -1.92 Total: -6.08 kcal Atomic # 14 Polarization: -4.46 SS G_CDS: 2.58 Total: -1.88 kcal Total: -16.76 5.67 -11.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.799 kcal (2) G-P(sol) polarization free energy of solvation -16.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds