Wall clock time and date at job start Mon Mar 8 2021 10:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32570 * 1 3 3 C 1.47818 * 119.99866 * 2 1 4 4 C 1.39536 * 120.11094 * 133.48892 * 3 2 1 5 5 C 1.38028 * 119.96301 * 179.72315 * 4 3 2 6 6 C 1.38228 * 120.20303 * 0.51093 * 5 4 3 7 7 C 1.50694 * 119.88901 * 179.76836 * 6 5 4 8 8 O 1.42902 * 109.47291 * 254.72580 * 7 6 5 9 9 Si 1.86307 * 109.46837 * 14.72050 * 7 6 5 10 10 H 1.48507 * 109.46978 * 180.02562 * 9 7 6 11 11 H 1.48502 * 109.46956 * 300.00253 * 9 7 6 12 12 H 1.48498 * 109.47182 * 60.00646 * 9 7 6 13 13 C 1.38860 * 120.22706 * 359.48747 * 6 5 4 14 14 O 1.35907 * 119.97948 * 180.23289 * 13 6 5 15 15 C 1.42904 * 116.99332 * 180.02562 * 14 13 6 16 16 C 1.38458 * 120.02982 * 0.25617 * 13 6 5 17 17 Si 1.86797 * 119.99912 * 179.97438 * 2 1 3 18 18 C 1.86305 * 109.47166 * 273.18314 * 17 2 1 19 19 C 1.86297 * 109.47279 * 33.18363 * 17 2 1 20 20 C 1.86295 * 109.47246 * 153.18369 * 17 2 1 21 21 H 1.08004 * 120.00089 * 180.02562 * 1 2 3 22 22 H 1.08001 * 120.00057 * 0.02562 * 1 2 3 23 23 H 1.07994 * 120.02026 * 359.97438 * 4 3 2 24 24 H 1.07998 * 119.89979 * 180.27659 * 5 4 3 25 25 H 1.09001 * 109.47738 * 134.72382 * 7 6 5 26 26 H 0.96697 * 114.00196 * 179.97438 * 8 7 6 27 27 H 1.09001 * 109.46860 * 180.02562 * 15 14 13 28 28 H 1.08998 * 109.47195 * 299.99831 * 15 14 13 29 29 H 1.08992 * 109.47208 * 60.00336 * 15 14 13 30 30 H 1.07996 * 120.09925 * 179.97438 * 16 13 6 31 31 H 1.09002 * 109.46707 * 59.99882 * 18 17 2 32 32 H 1.08993 * 109.47285 * 179.97438 * 18 17 2 33 33 H 1.08997 * 109.46956 * 300.00527 * 18 17 2 34 34 H 1.08994 * 109.47325 * 60.00033 * 19 17 2 35 35 H 1.08998 * 109.46982 * 180.02562 * 19 17 2 36 36 H 1.09006 * 109.47413 * 300.00035 * 19 17 2 37 37 H 1.09008 * 109.47103 * 65.84060 * 20 17 2 38 38 H 1.08996 * 109.47096 * 185.83509 * 20 17 2 39 39 H 1.08992 * 109.47121 * 305.84389 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2802 0.0000 4 6 3.1342 1.4711 0.8757 5 6 3.8258 2.6655 0.8692 6 6 3.4558 3.6786 0.0045 7 6 4.2126 4.9817 0.0070 8 8 3.4271 5.9875 0.6500 9 14 5.8183 4.7656 0.9267 10 1 6.5638 6.0499 0.9296 11 1 5.5361 4.3543 2.3254 12 1 6.6347 3.7205 0.2585 13 6 2.3929 3.4974 -0.8704 14 8 2.0364 4.4951 -1.7217 15 6 0.9333 4.2404 -2.5938 16 6 1.6958 2.3011 -0.8756 17 14 2.2597 -1.6177 0.0007 18 6 2.4857 -2.2035 1.7548 19 6 1.2971 -2.8910 -0.9600 20 6 3.9277 -1.3722 -0.7918 21 1 -0.5400 -0.9353 0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 3.4232 0.6832 1.5554 24 1 4.6562 2.8105 1.5443 25 1 4.4197 5.2837 -1.0197 26 1 3.8532 6.8547 0.6883 27 1 0.7547 5.1154 -3.2187 28 1 1.1610 3.3827 -3.2267 29 1 0.0432 4.0288 -2.0014 30 1 0.8687 2.1592 -1.5553 31 1 1.5097 -2.3472 2.2184 32 1 3.0303 -3.1477 1.7552 33 1 3.0488 -1.4586 2.3169 34 1 1.1649 -2.5483 -1.9862 35 1 1.8419 -3.8350 -0.9592 36 1 0.3211 -3.0347 -0.4964 37 1 4.5295 -0.7064 -0.1730 38 1 4.4307 -2.3346 -0.8853 39 1 3.7989 -0.9317 -1.7804 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_271570_14761194_12419834.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:28:42 Heat of formation + Delta-G solvation = -70.829711 kcal Electronic energy + Delta-G solvation = -18513.990522 eV Core-core repulsion = 15738.784871 eV Total energy + Delta-G solvation = -2775.205651 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.125 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.20964 -38.58281 -37.58092 -34.91282 -31.38099 -31.10170 -29.53452 -28.55635 -28.40793 -28.20552 -26.41450 -23.22745 -22.69180 -20.73175 -18.42210 -18.34855 -17.27724 -16.80743 -16.54865 -15.99445 -15.92871 -15.16083 -14.87569 -14.55920 -14.24480 -14.13357 -14.04486 -13.88614 -13.75356 -13.47079 -13.31950 -13.24217 -13.11567 -12.93431 -12.69917 -12.61729 -12.14968 -12.05059 -11.75851 -11.63929 -11.27444 -10.89860 -10.85330 -10.40834 -10.15527 -9.52120 -8.92011 0.09400 0.54041 1.15510 1.22576 1.49145 1.55011 1.70985 1.85379 1.95677 2.08957 2.40062 2.53369 2.85714 3.58142 3.79416 3.93852 4.09072 4.17183 4.26270 4.27736 4.46537 4.52722 4.60910 4.64309 4.67218 4.68570 4.73592 4.74306 4.76476 4.80368 4.82713 4.96511 5.19171 5.40997 5.42231 5.45839 5.52319 5.57489 5.58066 5.75005 5.91211 6.48790 6.74970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.375 4.375 3 C 0.013 3.987 4 C -0.152 4.152 5 C -0.081 4.081 6 C -0.117 4.117 7 C -0.069 4.069 8 O -0.542 6.542 9 Si 0.942 3.058 10 H -0.256 1.256 11 H -0.248 1.248 12 H -0.248 1.248 13 C 0.158 3.842 14 O -0.307 6.307 15 C 0.025 3.975 16 C -0.208 4.208 17 Si 1.050 2.950 18 C -0.448 4.448 19 C -0.449 4.449 20 C -0.447 4.447 21 H 0.106 0.894 22 H 0.093 0.907 23 H 0.130 0.870 24 H 0.129 0.871 25 H 0.073 0.927 26 H 0.376 0.624 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.130 0.870 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 -1.516 -1.360 2.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.416 4.416 3 C 0.013 3.987 4 C -0.170 4.170 5 C -0.099 4.099 6 C -0.117 4.117 7 C -0.179 4.179 8 O -0.347 6.347 9 Si 0.765 3.235 10 H -0.181 1.181 11 H -0.172 1.172 12 H -0.171 1.171 13 C 0.112 3.888 14 O -0.219 6.219 15 C -0.070 4.070 16 C -0.227 4.227 17 Si 1.242 2.758 18 C -0.555 4.555 19 C -0.557 4.557 20 C -0.555 4.555 21 H 0.124 0.876 22 H 0.112 0.888 23 H 0.148 0.852 24 H 0.147 0.853 25 H 0.091 0.909 26 H 0.223 0.777 27 H 0.119 0.881 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.148 0.852 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.221 -1.862 -0.890 2.076 hybrid contribution -0.450 0.545 -0.434 0.829 sum -0.228 -1.317 -1.323 1.881 Atomic orbital electron populations 1.24303 0.95505 1.01926 0.94483 1.28071 1.01077 1.08151 1.04262 1.18754 0.93912 0.92471 0.93581 1.21024 0.96927 0.98007 1.01027 1.20829 0.99371 0.93033 0.96637 1.18578 0.98459 0.95531 0.99174 1.24544 1.03152 0.88491 1.01706 1.86538 1.46263 1.21418 1.80504 0.85859 0.75501 0.81404 0.80713 1.18055 1.17153 1.17120 1.18668 0.93074 0.87014 0.90042 1.86134 1.49366 1.38216 1.48213 1.23090 0.87906 1.03157 0.92812 1.21391 1.03314 0.93446 1.04523 0.78349 0.66448 0.63266 0.67782 1.26131 1.04859 1.06076 1.18477 1.26140 1.08739 1.11897 1.08880 1.26113 1.17042 1.04709 1.07622 0.87600 0.88826 0.85239 0.85318 0.90855 0.77713 0.88069 0.92621 0.92647 0.85219 0.91124 0.90950 0.91082 0.91066 0.90849 0.91192 0.90896 0.91146 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.07 13.31 28.83 0.38 0.46 16 2 C -0.37 0.02 4.41 -37.57 -0.17 -0.15 16 3 C 0.01 0.02 5.26 -105.04 -0.55 -0.53 16 4 C -0.15 -0.26 8.65 -39.17 -0.34 -0.60 16 5 C -0.08 -0.20 8.64 -39.66 -0.34 -0.54 16 6 C -0.12 -0.41 5.31 -104.40 -0.55 -0.96 16 7 C -0.07 -0.13 2.36 36.00 0.08 -0.05 16 8 O -0.54 -1.33 12.86 -35.23 -0.45 -1.79 16 9 Si 0.94 0.59 25.47 -169.99 -4.33 -3.74 16 10 H -0.26 -0.15 7.11 56.52 0.40 0.25 16 11 H -0.25 -0.35 6.73 56.52 0.38 0.03 16 12 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 13 C 0.16 0.59 6.65 -39.27 -0.26 0.32 16 14 O -0.31 -1.04 9.81 -19.45 -0.19 -1.23 16 15 C 0.03 -0.01 9.81 101.05 0.99 0.99 16 16 C -0.21 -0.51 8.31 -39.04 -0.32 -0.83 16 17 Si 1.05 -2.09 11.16 -169.99 -1.90 -3.99 16 18 C -0.45 0.64 8.65 101.05 0.87 1.51 16 19 C -0.45 0.74 8.56 101.05 0.87 1.60 16 20 C -0.45 0.37 8.63 101.05 0.87 1.24 16 21 H 0.11 -0.25 7.36 -52.48 -0.39 -0.63 16 22 H 0.09 -0.02 7.84 -52.49 -0.41 -0.43 16 23 H 0.13 -0.06 6.97 -52.49 -0.37 -0.43 16 24 H 0.13 0.12 4.86 -52.49 -0.25 -0.14 16 25 H 0.07 0.08 7.82 -51.93 -0.41 -0.33 16 26 H 0.38 -0.79 8.74 45.56 0.40 -0.39 16 27 H 0.10 -0.19 8.14 -51.93 -0.42 -0.61 16 28 H 0.06 -0.07 7.66 -51.93 -0.40 -0.47 16 29 H 0.05 -0.04 7.66 -51.93 -0.40 -0.44 16 30 H 0.13 0.10 6.17 -52.49 -0.32 -0.22 16 31 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 32 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 33 H 0.07 -0.10 7.60 -51.93 -0.39 -0.49 16 34 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 36 H 0.07 -0.13 7.69 -51.93 -0.40 -0.53 16 37 H 0.07 -0.04 7.48 -51.92 -0.39 -0.43 16 38 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 39 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 LS Contribution 322.57 15.07 4.86 4.86 Total: 0.00 -5.65 322.57 -5.93 -11.58 By element: Atomic # 1 Polarization: -2.71 SS G_CDS: -5.45 Total: -8.16 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 1.53 Total: 2.46 kcal Atomic # 8 Polarization: -2.37 SS G_CDS: -0.64 Total: -3.02 kcal Atomic # 14 Polarization: -1.50 SS G_CDS: -6.23 Total: -7.72 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -5.65 -5.93 -11.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419834.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.250 kcal (2) G-P(sol) polarization free energy of solvation -5.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds