Wall clock time and date at job start Mon Mar 8 2021 10:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32570 * 1 3 3 C 1.47818 * 119.99866 * 2 1 4 4 C 1.39536 * 120.11094 * 133.48892 * 3 2 1 5 5 C 1.38028 * 119.96301 * 179.72315 * 4 3 2 6 6 C 1.38228 * 120.20303 * 0.51093 * 5 4 3 7 7 C 1.50694 * 119.88901 * 179.76836 * 6 5 4 8 8 O 1.42902 * 109.47291 * 254.72580 * 7 6 5 9 9 Si 1.86307 * 109.46837 * 14.72050 * 7 6 5 10 10 H 1.48507 * 109.46978 * 180.02562 * 9 7 6 11 11 H 1.48502 * 109.46956 * 300.00253 * 9 7 6 12 12 H 1.48498 * 109.47182 * 60.00646 * 9 7 6 13 13 C 1.38860 * 120.22706 * 359.48747 * 6 5 4 14 14 O 1.35907 * 119.97948 * 180.23289 * 13 6 5 15 15 C 1.42904 * 116.99332 * 180.02562 * 14 13 6 16 16 C 1.38458 * 120.02982 * 0.25617 * 13 6 5 17 17 Si 1.86797 * 119.99912 * 179.97438 * 2 1 3 18 18 C 1.86305 * 109.47166 * 273.18314 * 17 2 1 19 19 C 1.86297 * 109.47279 * 33.18363 * 17 2 1 20 20 C 1.86295 * 109.47246 * 153.18369 * 17 2 1 21 21 H 1.08004 * 120.00089 * 180.02562 * 1 2 3 22 22 H 1.08001 * 120.00057 * 0.02562 * 1 2 3 23 23 H 1.07994 * 120.02026 * 359.97438 * 4 3 2 24 24 H 1.07998 * 119.89979 * 180.27659 * 5 4 3 25 25 H 1.09001 * 109.47738 * 134.72382 * 7 6 5 26 26 H 0.96697 * 114.00196 * 179.97438 * 8 7 6 27 27 H 1.09001 * 109.46860 * 180.02562 * 15 14 13 28 28 H 1.08998 * 109.47195 * 299.99831 * 15 14 13 29 29 H 1.08992 * 109.47208 * 60.00336 * 15 14 13 30 30 H 1.07996 * 120.09925 * 179.97438 * 16 13 6 31 31 H 1.09002 * 109.46707 * 59.99882 * 18 17 2 32 32 H 1.08993 * 109.47285 * 179.97438 * 18 17 2 33 33 H 1.08997 * 109.46956 * 300.00527 * 18 17 2 34 34 H 1.08994 * 109.47325 * 60.00033 * 19 17 2 35 35 H 1.08998 * 109.46982 * 180.02562 * 19 17 2 36 36 H 1.09006 * 109.47413 * 300.00035 * 19 17 2 37 37 H 1.09008 * 109.47103 * 65.84060 * 20 17 2 38 38 H 1.08996 * 109.47096 * 185.83509 * 20 17 2 39 39 H 1.08992 * 109.47121 * 305.84389 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3257 0.0000 0.0000 3 6 2.0648 1.2802 0.0000 4 6 3.1342 1.4711 0.8757 5 6 3.8258 2.6655 0.8692 6 6 3.4558 3.6786 0.0045 7 6 4.2126 4.9817 0.0070 8 8 3.4271 5.9875 0.6500 9 14 5.8183 4.7656 0.9267 10 1 6.5638 6.0499 0.9296 11 1 5.5361 4.3543 2.3254 12 1 6.6347 3.7205 0.2585 13 6 2.3929 3.4974 -0.8704 14 8 2.0364 4.4951 -1.7217 15 6 0.9333 4.2404 -2.5938 16 6 1.6958 2.3011 -0.8756 17 14 2.2597 -1.6177 0.0007 18 6 2.4857 -2.2035 1.7548 19 6 1.2971 -2.8910 -0.9600 20 6 3.9277 -1.3722 -0.7918 21 1 -0.5400 -0.9353 0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 3.4232 0.6832 1.5554 24 1 4.6562 2.8105 1.5443 25 1 4.4197 5.2837 -1.0197 26 1 3.8532 6.8547 0.6883 27 1 0.7547 5.1154 -3.2187 28 1 1.1610 3.3827 -3.2267 29 1 0.0432 4.0288 -2.0014 30 1 0.8687 2.1592 -1.5553 31 1 1.5097 -2.3472 2.2184 32 1 3.0303 -3.1477 1.7552 33 1 3.0488 -1.4586 2.3169 34 1 1.1649 -2.5483 -1.9862 35 1 1.8419 -3.8350 -0.9592 36 1 0.3211 -3.0347 -0.4964 37 1 4.5295 -0.7064 -0.1730 38 1 4.4307 -2.3346 -0.8853 39 1 3.7989 -0.9317 -1.7804 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_271570_14761194_12419834.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:28:41 Heat of formation + Delta-G solvation = -64.121032 kcal Electronic energy + Delta-G solvation = -18513.699611 eV Core-core repulsion = 15738.784871 eV Total energy + Delta-G solvation = -2774.914741 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.125 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.32446 -38.69240 -37.69076 -34.95234 -31.42735 -31.21343 -29.40634 -28.48242 -28.27723 -28.17405 -26.49097 -23.33540 -22.78095 -20.77275 -18.50701 -18.45702 -17.38611 -16.90566 -16.63844 -16.04259 -15.95120 -15.24838 -14.91151 -14.59660 -14.28121 -14.05312 -13.97535 -13.81182 -13.72084 -13.43571 -13.18596 -13.14642 -13.00711 -12.87062 -12.75497 -12.66954 -12.19958 -12.10960 -11.83625 -11.72147 -11.21372 -10.82146 -10.77056 -10.36263 -10.24855 -9.62898 -9.04119 -0.00582 0.39424 1.15255 1.18981 1.44501 1.49880 1.82375 1.87827 2.00986 2.21268 2.33971 2.61489 2.78616 3.52877 3.74956 3.85309 4.02525 4.17564 4.21818 4.30935 4.38536 4.44415 4.59727 4.65787 4.75847 4.83167 4.85337 4.86187 4.87685 4.89459 4.90229 4.95525 5.12638 5.32389 5.36674 5.49165 5.58641 5.65734 5.68660 5.71173 5.88872 6.38007 6.83422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.391 4.391 3 C 0.007 3.993 4 C -0.159 4.159 5 C -0.092 4.092 6 C -0.142 4.142 7 C -0.076 4.076 8 O -0.563 6.563 9 Si 0.982 3.018 10 H -0.253 1.253 11 H -0.259 1.259 12 H -0.255 1.255 13 C 0.139 3.861 14 O -0.326 6.326 15 C 0.019 3.981 16 C -0.218 4.218 17 Si 1.107 2.893 18 C -0.459 4.459 19 C -0.458 4.458 20 C -0.463 4.463 21 H 0.126 0.874 22 H 0.086 0.914 23 H 0.149 0.851 24 H 0.140 0.860 25 H 0.075 0.925 26 H 0.393 0.607 27 H 0.116 0.884 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.140 0.860 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.338 -2.296 -1.203 2.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.430 4.430 3 C 0.007 3.993 4 C -0.177 4.177 5 C -0.110 4.110 6 C -0.142 4.142 7 C -0.186 4.186 8 O -0.371 6.371 9 Si 0.804 3.196 10 H -0.177 1.177 11 H -0.184 1.184 12 H -0.179 1.179 13 C 0.093 3.907 14 O -0.239 6.239 15 C -0.075 4.075 16 C -0.236 4.236 17 Si 1.295 2.705 18 C -0.566 4.566 19 C -0.565 4.565 20 C -0.570 4.570 21 H 0.144 0.856 22 H 0.104 0.896 23 H 0.167 0.833 24 H 0.157 0.843 25 H 0.093 0.907 26 H 0.242 0.758 27 H 0.135 0.865 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.158 0.842 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.063 -2.610 -0.747 2.716 hybrid contribution -0.449 0.802 -0.509 1.050 sum -0.387 -1.808 -1.255 2.235 Atomic orbital electron populations 1.24497 0.95445 1.02617 0.93625 1.28464 1.01502 1.08176 1.04876 1.19052 0.94015 0.93094 0.93177 1.21335 0.96808 0.98319 1.01266 1.21065 0.99896 0.93238 0.96776 1.18936 0.99047 0.96559 0.99687 1.24729 1.03693 0.87931 1.02204 1.86483 1.47363 1.22649 1.80599 0.85295 0.73999 0.81003 0.79278 1.17746 1.18355 1.17874 1.18923 0.93677 0.87560 0.90546 1.86093 1.50486 1.38682 1.48682 1.23298 0.87186 1.04358 0.92706 1.21597 1.03622 0.93388 1.05026 0.77484 0.64634 0.61572 0.66795 1.26245 1.05039 1.06350 1.18940 1.26227 1.09235 1.12143 1.08908 1.26317 1.18457 1.04807 1.07369 0.85559 0.89572 0.83306 0.84278 0.90730 0.75767 0.86547 0.91735 0.92308 0.84222 0.90966 0.90565 0.91124 0.91240 0.90564 0.90578 0.91271 0.90681 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.20 13.31 66.67 0.89 1.09 16 2 C -0.39 0.11 4.41 23.65 0.10 0.21 16 3 C 0.01 0.03 5.26 -20.13 -0.11 -0.08 16 4 C -0.16 -0.65 8.65 22.53 0.19 -0.45 16 5 C -0.09 -0.55 8.64 22.22 0.19 -0.36 16 6 C -0.14 -1.20 5.31 -19.72 -0.10 -1.30 16 7 C -0.08 -0.38 2.36 71.23 0.17 -0.21 16 8 O -0.56 -3.37 12.86 -148.98 -1.92 -5.29 16 9 Si 0.98 1.58 25.47 68.60 1.75 3.32 16 10 H -0.25 -0.21 7.11 99.48 0.71 0.50 16 11 H -0.26 -0.83 6.73 99.48 0.67 -0.16 16 12 H -0.25 -0.63 7.11 99.48 0.71 0.08 16 13 C 0.14 1.24 6.65 22.47 0.15 1.39 16 14 O -0.33 -2.68 9.81 -92.51 -0.91 -3.58 16 15 C 0.02 0.01 9.81 113.37 1.11 1.12 16 16 C -0.22 -1.30 8.31 22.62 0.19 -1.12 16 17 Si 1.11 -5.08 11.16 68.60 0.77 -4.31 16 18 C -0.46 1.70 8.65 113.37 0.98 2.68 16 19 C -0.46 1.97 8.56 113.37 0.97 2.94 16 20 C -0.46 0.72 8.63 113.37 0.98 1.70 16 21 H 0.13 -0.76 7.36 -2.91 -0.02 -0.78 16 22 H 0.09 -0.02 7.84 -2.91 -0.02 -0.05 16 23 H 0.15 -0.15 6.97 -2.91 -0.02 -0.17 16 24 H 0.14 0.36 4.86 -2.91 -0.01 0.35 16 25 H 0.07 0.27 7.82 -2.39 -0.02 0.25 16 26 H 0.39 -1.36 8.74 -74.06 -0.65 -2.00 16 27 H 0.12 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.06 -0.12 7.66 -2.39 -0.02 -0.13 16 29 H 0.06 -0.04 7.66 -2.39 -0.02 -0.06 16 30 H 0.14 0.36 6.17 -2.91 -0.02 0.34 16 31 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 32 H 0.08 -0.33 7.96 -2.39 -0.02 -0.35 16 33 H 0.07 -0.24 7.60 -2.39 -0.02 -0.26 16 34 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 35 H 0.08 -0.35 7.96 -2.39 -0.02 -0.37 16 36 H 0.08 -0.40 7.69 -2.38 -0.02 -0.42 16 37 H 0.07 -0.06 7.48 -2.38 -0.02 -0.08 16 38 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 39 H 0.06 0.00 7.96 -2.39 -0.02 -0.02 16 Total: 0.00 -13.26 322.57 6.50 -6.76 By element: Atomic # 1 Polarization: -5.61 SS G_CDS: 1.10 Total: -4.51 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 5.72 Total: 7.62 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -2.82 Total: -8.87 kcal Atomic # 14 Polarization: -3.50 SS G_CDS: 2.51 Total: -0.99 kcal Total: -13.26 6.50 -6.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_271570_14761194_12419834.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.363 kcal (2) G-P(sol) polarization free energy of solvation -13.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -6.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds